Baptiste et al.
JOCArticle
also known to fold into helices, have been prepared on solid
support as well.6
matic oligomers is rendered more difficult than for aliphatic
peptides both in solution and in the solid phase because of
the poor nucleophilicity of some aromatic amines. It is not
uncommon that strong acid activation such as an acid
chloride is required for coupling to proceed.15 This difficulty
is particularly serious for helically folded structures for
which folding in the reaction mixture results in steric hin-
drance, leading to slower reactions and generally poorer
yields, in particular when coupling together two long
sequences.16 Synthetic problems associated with folding
and aggregation are notorious in the SPS of long aliphatic
R-peptides as well.17 In the case of aromatic oligoamide
foldamers, these problems are not easy to solve because the
folded structures are generally extremely stable and do not
denature under ambient conditions.14a,15a,16,18 A solution has
been proposed that consists of temporarily changing some
secondary amides into tertiary amides so as to disrupt the folded
structures and reduce hindrance.19 Alternatively, we have
shown that some benzylic amines could be made compatible
with the folding modes of aromatic oligoamides foldamers and
bring both a higher nucleophilicity and a higher flexibility,
which in turn allowed the solution synthesis of long oligomers.20
With the aim of speeding up the preparation of helically
folded quinoline-derived aromatic amide oligomers and to
facilitate the introduction of multiple proteinogenic side
chains in their sequences in view of potential biological
applications, we have investigated and now report the meth-
ods for their synthesis on solid phase. Three different side
chains were introduced within the foldamer sequences: a
leucine-like, an ornithine-like, and an asparate-like side
chain. Protocols for the synthesis of rigid, purely aromatic
backbones have been optimized using acid chloride activa-
tion. Alternate and easier routes that make use of some
aliphatic (benzylic) amines in the sequences and conven-
tional coupling agents have also been validated. Further-
more, because this later approach generates more flexible
backbones, structural studies in solution have been carried
out to verify the helical folding of the resulting oligomers in
protic solvents and thus confirm the appropriateness of
aliphatic amines in this context.
SPS has less commonly been applied to aromatic oligoa-
mide sequences, and in all cases the reduced reactivity of
aromatic amines as compared to aliphatic amines had to be
overcome. In the synthesis of pyrrole- and imidazole-based
oligoamides, Dervan et al. observed incomplete couplings to
imidazole amines when using acids activated with the con-
ventional coupling reagent HBTU. A complete acylation of
the imidazole amine could be restored when the authors
applied the mixed anhydride activations, in the presence of,
e.g., Boc-pyrrole anhydride.7 Similarly, Kilbinger et al. did
not observe successful couplings of aromatic secondary
amines when using traditional solid phase coupling proce-
dures, and in their case, even mixed anhydride activation was
inefficient.8 They finally succeeded by using an activation
method originally reported by Ueda et al.9 involving SOCl2
(1 equiv) in NMP leading to the formation of an acid chloride
under mild conditions. This work was recently extended by
Wilson et al., who prepared aromatic-aliphatic tertiary
amides that project their side chains in a way similar to that
of an R-helix.10
To the best of our knowledge, there has been no report on
the SPS of stable helical aromatic amide foldamers. The need
to develop and extend the scope of SPS of aromatic oligoa-
mides is becoming obvious with the emergence of multiple
potential biological applications of these compounds.11-14
Indeed, the optimization of biological activities often pro-
ceeds through the parallel synthesis of multiple structural
variants possessing different proteinogenic side chains,
which is best achieved on solid phase, as recognized by
others.10 However, as mentioned above, synthesis of aro-
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