Site-Selective Artificial Metalloproteases
A R T I C L E S
The optimum pH of 9.0-9.5 reflects the overall efficiency of
complexation of the protein by the catalyst, the formation of
imine intermediates, and the catalytic action of Cu(II)Cyc
combined with hydroxide ion and the Tyr phenol group.
structure, the artificial proteases would become more effective
and achieve higher reaction rates and high amino acid specific-
ity.
Experimental Section
Figure 5 indicates that Gly(1)-Gln(91) and Gly(1)-Ala(94)
are degraded rapidly, whereas Ser(92)-Gly(153) and Thr(95)-
Gly(153) are more stable during incubation with Cu(II)A-PS.
Those protein fragments contain Lys residues which can interact
with the aldehyde group of Cu(II)A-PS. The faster degradation
of Gly(1)-Gln(91) and Gly(1)-Ala(94) suggests the presence
of extra catalytic groups provided by the protein fragments,
although no information is available for the three-dimensional
structure of Gly(1)-Gln(91) and Gly(1)-Ala(94).
When myoglobin or its degradation products are reductively
linked to polystyrene by treatment with NaB(OAc)3H, the
amount of total amino acids released to the buffer solution is
considerably reduced, indicating suppression of cleavage of the
polypeptide backbones. The aldehyde group of the polystyrene-
based protease forms imine complexes with various Lys amino
groups of the protein substrate reversibly. In the absence of NaB-
(OAc)3H, various forms of the imine complexes would revers-
ibly transform into one another until the productive forms
undergo protein cleavage. In the presence of NaB(OAc)3H,
however, reduction of the unproductive forms of the imine
complexes can immobilize the proteins blocking the protein
fragmentation.
Preparation of Catalysts. The derivative of poly(styrene-co-
divinylbenzene) with 17% of styryl residues aminomethylated (1.5
mmol NH2 per gram resin) and with 2% cross-linkage was purchased
from Fluka. A solution of a precursor (A5, A5cont, B1, or B1cont) of the
catalytic module or the control module (0.73 mmol) mixed with 2-(1H-
benzotriazole-1-yl)-1,1,3,3-tetramethyluronium hexafluorophosphate
(HBTU) (280 mg; 0.73 mmol), di-i-propylethylamine (DIEA) (0.40
mL; 2.3 mmol), and N-hydroxybenzotriazole (HOBT) (89 mg; 0.66
mmol) in 5 mL of N,N-dimethylformamide (DMF) was added to the
suspension of the polystyrene (4.0 g) in 30 mL of DMF. The suspension
was degassed for 30 min and shaken at 45 rpm and room temperature
for 1 day. The product resin (A5-PSo, A5cont-PSo, B1-PSo, or B1cont
-
PSo) was collected by filtration, washed with CH2Cl2 (30 mL × 5) and
CH3OH (30 mL × 5), and dried in vacuo. The amino groups of the
resulting resin were acetylated by shaking the resin (4.0 g) with acetic
anhydride (5.7 mL) and DIEA (10 mL) dissolved in 30 mL of DMF at
room temperature for 1 day. The product resin was collected by
filtration, washed with DMF (30 mL × 5) and CH3OH (30 mL × 5),
and dried in vacuo to obtain the acetylated derivative (A5-PS, A5cont
-
PS, B1-PS, or B1cont-PS). Kaiser test43 indicated that the remaining
amino groups were quantitatively acetylated. The acetylated resin (4.0
g) was shaken in the mixture of 6 mL of trifluoroacetic acid (TFA)
and 30 mL of CH2Cl2 at 45 rpm and room temperature for 1 h. The
product resin was collected by filtration and washed with CH2Cl2 (30
mL × 5). Then the resin was shaken in 6 mL of DIEA and 24 mL of
CH2Cl2 at 45 rpm and room temperature for 1 h. The product resin
was collected by filtration, washed with CH2Cl2 (30 mL × 5) and CH3-
OH (30 mL × 5), and dried in vacuo to obtain A-PS, Acont-PS, B-PS,
or Bcont-PS. To the suspension of A-PS or B-PS (0.10 g) in CH3OH
(1.5 mL) were added acetic acid (15 µL) and p-toluenesulfonhydrazide
(2.6 mg, 0.014 mmol). The resulting mixture was shaken at 45 rpm
and room temperature for 5 h. The resin was filtered, washed with
CH3OH (10 mL × 5) and CH2Cl2 (30 mL × 5), and dried in vacuo to
obtain Ahydraz-PS or Bhydraz-PS. To a 0.23 M CuCl2‚2H2O solution in
DMF (25 mL), the cyclen-containing polystyrene derivative (4.0 g)
was suspended, and the resulting mixture was shaken at 45 rpm and
room temperature for 1 day and washed with DMF (30 mL × 5) and
CH3OH (30 mL × 5) to obtain the Cu(II) complex of the cyclen-
containing polystyrene derivative (Cu(II)A-PS, Cu(II)Acont-PS, Cu-
(II)Ahydraz-PS, Cu(II)B-PS, Cu(II)Bcont-PS, or Cu(II)Bhydraz-PS).
Measurements. In kinetic measurements, the shaking speed and
temperature were controlled with a VORTEMP manufactured by
Labnet. pH measurements were carried out with a Dongwoo Medical
DP-880 pH/Ion meter. The degree of cleavage of proteins was measured
by SDS-PAGE with a Mighty Small II SE 250 model. Densities of the
electrophoretic bands were analyzed with a AlphaImager 2200 model
and a AlphaEase model. MALDI-TOF MS analysis was performed with
a Voyger-DE STR Biospectrometry Workstation model. NMR spectra
were recorded with a Bruker DPX 300 MHz model, and the UV-vis
spectra with a Beckman DU 68 UV-vis spectrometer. ICP-AES
measurement was carried out with a Shimadzu ICPS-1000IV model.
EPMA was performed with a CAMECA SX-57 model. Distilled and
deionized water was used for preparation of buffer solutions. Buffers
(0.05 M) used in this study were acetate (pH 5.0), 2-(N-morpholine)-
ethanesulfonate (pH 6.0), N-2-hydroxyethylpiperazine-N′-ethansulfonate
(pH 7.0-8.0), N-tris(hydroxymethyl)methyl-3-aminopropanesulfonate
(pH 8.5), and boric acid (pH 9.0-10.5). Kinetic measurements and
trapping experiments were carried out in the presence of 0.3 M NaCl.
In vivo, digestive proteases and proteasomes mostly hydrolyze
unfolded or precleaved proteins. For example, pepsin cleaves
proteins unfolded in the acidic medium of stomach producing
protein fragments, which are cleaved further by other proteases
in the intestine. Proteasomes, the main enzymes of the non-
lysosomal pathway of protein degradation in cells of higher
organisms, cleave cellular proteins unfolded with ATP.41 In the
industrial application of artificial proteases, however, it is
desirable to hydrolyze a variety of proteins without addition of
denaturing agents. Hydrophilic residues such as ammonium or
carboxylate ions are exposed on the surface of undenatured
globular proteins.42 To synthesize artificial proteases recognizing
undenatured protein molecules, we chose to design recognition
sites targeting the ammonium groups exposed on the surface
of protein substrates. As we expected, artificial proteases Cu-
(II)A-PS and Cu(II)B-PS cleaved all of the protein substrates
tested in the present study by using both the aldehyde and the
Cu(II)Cyc moiety in the active site. Furthermore, the artificial
proteases manifested high cleavage site selectivity.
The immobile artificial proteases can overcome thermal,
chemical, and mechanical instabilities of natural proteases.
Broad substrate selectivity, high proteolytic rate, and high
cleavage-site selectivity are the three major objectives in
designing artificial proteases applicable to protein industry. By
introducing an aldehyde group in proximity to the Cu(II)Cyc
attached to polystyrene, remarkable improvement has been
achieved in those three major goals. By incorporating more
catalytic elements to the artificial active site with a better-defined
(41) Kisselev, A. F.; Goldberg, A. L. Chem. Biol. 2001, 8, 739-758.
(42) It has been recently reported28 that an artificial peptidase based on a Pd-
(II)-cyclodextrin conjugate recognized the phenyl residue of an oligopep-
tide and hydrolyzed the adjacent peptide bond of the oligopeptide. This
catalyst would not cleave the peptide backbones of globular proteins if the
phenyl residues are not exposed on the surface of the protein substrates.
(43) Sarin, V. K.; Kent, S. B. H.; Tam, J. P.; Merrifield, R. B. Anal. Biochem.
1981, 117, 147-157.
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J. AM. CHEM. SOC. VOL. 127, NO. 26, 2005 9601