JOURNAL OF ENZYME INHIBITION AND MEDICINAL CHEMISTRY
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4.1.6. tert-Butyl (exo)-3-(((8-(4-cyano-2-fluorophenyl)-7,8-dihydro- 128.4 (d, J ¼ 2.5 Hz), 121.8, 120.6 (d, J ¼ 23.7 Hz), 117.6 (d,
J ¼ 2.4 Hz), 109.4 (d, J ¼ 9.2 Hz), 68.1, 64.5, 53.1, 52.6, 48.2 (d,
6H-pyrimido[5,4-b][1,4]oxazin-4-yl)amino)methyl)-8-azabicy-
J ¼ 4.4 Hz), 43.1, 35.9, 35.4, 28.3, 27.9, 22.3 (x2). HRMS-TOF (m/z)
clo[3.2.1]octane-8-carboxylate (11)
calcd for C24H27FN6O3 [M þ H]þ: 467.2201, found 467.2282.
1
Yellowish solid, 45% yield. H-NMR (600 MHz, CDCl3) d (ppm): 7.92
(s, 1H), 7.55–7.51 (m, 1H), 7.50–7.44 (m, 2H), 5.00 (t, J ¼ 6.1 Hz, 1H),
4.39–4.35 (m, 2H), 4.30 (s, 1H), 4.20 (s, 1H), 3.95–3.81 (m, 2H), 3.37
(d, J ¼ 23.7 Hz, 2H), 2.29–2.14 (m, 1H), 1.97 (s, 2H), 1.72–1.63 (m,
4.1.11. General procedure of compounds 16–20
4H), 1.65 (s, 2H), 1.49 (s, 9H). HRMS-TOF (m/z) calcd for
To a solution of compound 14 (0.26 mmol) in DMF (3 ml), chloro-
C26H31FN6O3 [M þ H]þ: 495.2514, found 495.2592.
fragments (0.34 mmol) and K2CO3 (1 mmol) were added. The reac-
tion was stirred at r. t. for overnight. Then the mixture was poured
into ice water. The mix solution was extracted with ethyl acetate
for two times, washed with brine for 2 times. The organic layer
was dried over MgSO4, filtered and evaporated. The residue was
purified by column chromatography to afford the desired product.
4.1.7. tert-Butyl 4-((8-(4-cyano-2-fluorophenyl)-7,8-dihydro-6H-pyri-
mido[5,4-b][1,4]oxazin-4-yl)amino)piperidine-1-carboxylate (12)
1
Yellowish solid, 76% yield. H-NMR (600 MHz, CDCl3) d (ppm): 7.93
(s, 1H), 7.56–7.51 (m, 1H), 7.48 (m, 2H), 4.83 (d, J ¼ 8.1 Hz, 1H), 4.38
(t, J ¼ 4.3 Hz, 2H), 4.17–4.11 (m, 3H), 3.89–3.87 (t, J ¼ 3.7, 2H), 2.98
(m, 2H), 2.07–2.05 (m, 2H), 1.49 (s, 9H), 1.43–1.40 (m, 2H). 13C-
NMR (150 MHz, CDCl3) d (ppm): 156.4 (d, J ¼ 250.7 Hz), 154.8,
4.1.12. 4-(4-(((endo)-8-(5-Ethylpyrimidin-2-yl)-8-azabicyclo[3.2.1]oc-
151.2, 149.7, 144.2, 135.4 (d, J ¼ 10.5 Hz), 128.5 (d, J ¼ 3.6 Hz),
tan-3-yl)amino)-6,7-dihydro-8H-pyrimido[5,4-b][1,4]oxazin-8-yl)-3-
128.4 (d, J ¼ 2.6 Hz), 121.7, 120.6 (d, J ¼ 23.7 Hz), 117.6 (d,
fluorobenzonitrile (16)
Yellowish solid, 47% yield. H-NMR (600 MHz, CDCl3) d (ppm): 8.22
J ¼ 2.7 Hz), 109.5 (d, J ¼ 9.0 Hz), 79.7, 64.3, 48.2 (d, J ¼ 3.8 Hz), 47.6,
1
43.0, 32.5 (x2), 28.5 (x3). HRMS-TOF (m/z) calcd for C23H27FN6O3
(s, 2H), 7.92 (s, 1H), 7.55–7.51 (m, 1H), 7.47 (m, 2H), 5.52 (d,
[M þ H]þ: 455.2201, found 455.2275.
J ¼ 7.2 Hz, 1H), 4.78 (s, 2H), 4.43–4.37 (m, 2H), 4.30 (q, J ¼ 6.6 Hz,
1H), 3.92–3.85 (m, 2H), 2.50 (q, J ¼ 7.6 Hz, 2H), 2.38 (m, 2H),
2.25–2.18 (m, 2H), 2.13 (m, 2H), 1.89 (d, J ¼ 14.2 Hz, 2H), 1.23 (t,
4.1.8. tert-Butyl 3-((8-(4-cyano-2-fluorophenyl)-7,8-dihydro-6H-pyri-
mido[5,4-b][1,4]oxazin-4-yl)amino)-9-azabicyclo[3.3.1]nonane-9-
J ¼ 7.6 Hz, 3H). 13C-NMR (150 MHz, CDCl3) d (ppm): 159.1, 157.5
(x2), 156.4 (d, J ¼ 250.7 Hz), 151.4, 149.9, 143.8, 135.5 (d,
carboxylate (13)
1
J ¼ 10.4 Hz), 128.5 (d, J ¼ 3.5 Hz), 128.4 (d, J ¼ 2.6 Hz), 124.6, 121.8,
Yellowish solid, 52% yield. H-NMR (600 MHz, CDCl3) d (ppm): 7.91
120.6 (d, J ¼ 23.7 Hz), 117.6 (d, J ¼ 2.7 Hz), 109.4 (d, J ¼ 9.2 Hz),
64.5, 52.6 (x2), 48.3 (d, J ¼ 3.9 Hz), 43.5, 34.7 (x2), 28.1 (x2), 22.8,
15.6. HRMS-TOF (m/z) calcd for C26H27FN8O [M þ H]þ: 487.2365,
found 487.2462.
(s, 1H), 7.52 (t, J ¼ 7.8 Hz, 1H), 7.50–7.43 (m, 2H), 4.71 (d, J ¼ 8.3 Hz,
1H), 4.60 (t, J ¼ 9.0 Hz, 1H), 4.46 (d, J ¼ 12.3 Hz, 1H), 4.36 (dt,
J ¼ 6.2, 4.8 Hz, 2H), 4.03 (m, 1H), 3.93–3.81 (m, 2H), 2.52 (m, 2H),
2.09–1.94 (m, 2H), 1.85 (m, 1H), 1.77–1.74 (m, 1H), 1.72–1.69 (m,
1H), 1.66-.1.61 (m, 1H), 1.58–1.57 (m, 1H), 1.50 (s, 9H), 1.43–1.41
(m, 2H). HRMS-TOF (m/z) calcd for C26H31FN6O3 [M þ H]þ:
495.2514, found 495.2600.
4.1.13.
4-(4-(((endo)-8-(5-Chloropyrimidin-2-yl)-8-azabicy-
clo[3.2.1]octan-3-yl)amino)-6,7-dihydro-8H-pyrimido[5,4-b][1,4]oxa-
zin-8-yl)-3-fluorobenzonitrile (17)
Yellowish solid, 51% yield. H-NMR (600 MHz, CDCl3) d (ppm): 8.27
4.1.9. 4-(4-(((endo)-8-Azabicyclo[3.2.1]octan-3-yl)amino)-6,7-dihy-
dro-8H-pyrimido[5,4-b][1,4]oxazin-8-yl)-3-fluorobenzonitrile (14)
To a solution of compound 10 (1 mmol) in 3 M HCl/EtOH (40 ml)
was stirred at r. t. for overnight. Then the mixture was filtered to
obtain the product 14, which was used for next step without puri-
fication. MS-ESI: [M þ H]þ: 381.3.
1
(s, 2H), 7.92 (s, 1H), 7.53 (t, J ¼ 7.8 Hz, 1H), 7.51–7.44 (m, 2H), 5.48
(d, J ¼ 7.1 Hz, 1H), 4.87–4.67 (m, 2H), 4.49–4.38 (m, 2H), 4.28 (q,
J ¼ 6.6 Hz, 1H), 3.95–3.83 (m, 2H), 2.34 (m, 2H), 2.26–2.19 (m, 2H),
2.14 (m, 2H), 1.96–1.88 (m, 2H). 13C-NMR (150 MHz, CDCl3) d
(ppm): 158.0, 156.4 (d, J ¼ 250.6 Hz), 156.3 (x2), 151.3, 149.9, 143.9,
135.4 (d, J ¼ 10.5 Hz), 128.5 (d, J ¼ 3.6 Hz), 128.4 (d, J ¼ 2.5 Hz),
121.8, 120.6 (d, J ¼ 23.7 Hz), 118.1, 117.6 (d, J ¼ 2.6 Hz), 109.4 (d,
J ¼ 9.2 Hz), 64.5, 52.8 (x2), 48.2 (d, J ¼ 3.9 Hz), 43.4, 34.6 (x2), 28.1
(x2). HRMS-TOF (m/z) calcd for C24H22ClFN8O [M þ H]þ: 493.1662,
found 493.1751.
4.1.10. Isopropyl (endo)-3-((8-(4-cyano-2-fluorophenyl)-7,8-dihydro-
6H-pyrimido[5,4-b][1,4]oxazin-4-yl)amino)-8-azabicyclo[3.2.1]oc-
tane-8-carboxylate (15)
To a solution of compound 14 (0.1 g, 0.26 mmol) in dichlorome-
thane (3 ml), isopropyl carbonochloridate (30 lL, 0.34 mmol) and
Et3N (73 lL, 1 mmol) were added. The reaction was stirred at r.t.
for overnight. Then mixture was diluted with dichloromethane,
washed with brine for two times. The organic layer was dried over
MgSO4, filtered and evaporated. The residue was purified by col-
umn chromatography (petroleum ether: EtOAc ¼ 1: 1) to afford
the desired product as a light yellow solid (70 mg, 58%). 1H-NMR
(600 MHz, CDCl3) d (ppm): 7.93 (s, 1H), 7.54–7.51 (m, 1H), 7.48 (m,
2H), 5.38 (d, J ¼ 6.9 Hz, 1H), 4.98 (dt, J ¼ 12.5, 6.2 Hz, 1H), 4.40–4.37
(m, 3H), 4.34 (m, 2H), 3.89 (m, 2H), 2.37 (m, 1H), 2.24 (m, 1H), 2.13
(m, 2H), 2.02 (m, 2H), 1.87 (m, 2H), 1.28 (s, 3H), 1.27 (s, 3H). 13C-
NMR (150 MHz, CDCl3) d (ppm): 156.4 (d, J ¼ 250.5 Hz), 153.6,
4.1.14.
3-Fluoro-4-(4-(((endo)-8-(2-oxo-2-(3-(trifluoromethyl)-5,6-
dihydro-[1,2,4]triazolo[4,3-a]pyrazin-7(8H)-yl)ethyl)-8-azabicy-
clo[3.2.1]octan-3-yl)amino)-6,7-dihydro-8H-pyrimido[5,4-b][1,4]oxa-
zin-8-yl)benzonitrile (18)
1
Yellowish solid, 44% yield. H-NMR (600 MHz, CDCl3) d (ppm): 7.91
(s, 1H), 7.53–7.50 (m, 1H), 7.49–7.43 (m, 2H), 5.30 (m, 2H), 5.05 (s,
1H), 4.38 (m, 2H), 4.33–4.16 (m, 4H), 4.11 (t, J ¼ 5.6 Hz, 1H), 3.87 (t,
J ¼ 4.3 Hz, 2H), 3.36 (d, J ¼ 3.8 Hz, 2H), 3.26 (m, 2H), 2.29–2.08 (m,
4H), 1.97 (m, 2H), 1.82 (m, 2H). HRMS-TOF (m/z) calcd for
151.3, 149.8, 143.9, 135.4 (d, J ¼ 10.5 Hz), 128.5 (d, J ¼ 3.6 Hz), C28H28FN10O2 [M þ H]þ: 613.2406, found 613.2508.