Journal of Medicinal Chemistry
ARTICLE
ꢀ 80 mL), NaHCO3 (saturated, 3 ꢀ 80 mL), and brine (3 ꢀ 80 mL).
The organic layer was dried over MgSO4, and after filtration, the residue
was evaporated. No further purification was necessary.
Hz), 5.29(m, 2H), 4.44(t, 2H,J=6.5Hz),4.28(d, 1H,J=15.8Hz), 4.07(d,
1H, J = 15.8 Hz), 3.45 (dd, 1H, J1 = 17.2 Hz, J2 = 5.0 Hz), 2.96 (dd, 1H, J1 =
17.3 Hz, J2 = 14.4 Hz), 1.45 (s, 9H). 13C NMR (CDCl3): δ 173.0, 168.8,
155.3, 140.6, 135.2, 132.6, 132.1, 131.7, 130.9, 128.8, 128.6, 127.8, 126.6,
121.5, 80.4, 53.6, 52.6, 50.4, 42.6, 36.9, 28.5
Acetylation. Amine TFA salt (0.89 mmol, 1 equiv) was dissolved in
acetonitrile:water 1:1 (10 mL), and the pH was adjusted to 6 by the
addition of NEt3. Ac2O (0.42 mL, 4.5 mmol, 5 equiv) was added in three
portions, while the pH was kept at 6. The reaction was stirred for 2 h at
room temperature. The solution was evaporated, and after the addition
of EtOAc (25 mL), it was extracted with HCl (1 M, 3 ꢀ 15 mL),
NaHCO3 (saturated, 3 ꢀ 15 mL), and brine (3 ꢀ 15 mL). The organic
layer was dried over MgSO4, and after filtration, the solution was
evaporated.
Saponification. Methyl ester (4.1 mmol) was dissolved in MeOH
(96 mL), and aqueous LiOH (1 M, 4 equiv, 16 mmol, 16.2 mL) was added.
The reaction was monitored by TLC (silica, EtOAc), and after 1.5 h,
it was complete. MeOH was evaporated, and water (100 mL) and
EtOAc (50 mL) were added. After extraction, the aqueous layer was
acidified to pH 4 and extracted with EtOAc (3 ꢀ 50 mL). The organic
layers were combined and washed with brine (3 ꢀ 100 mL). The
organic phase was dried over MgSO4, and after filtration, the mixture
was evaporated.
Ac-(S)-Aba-Gly-NH-30,50-(CF3)2-Bn (19). Preparative HPLC yielded
the desired compound (white powder, 43%). HPLC (standard
gradient): tret, 15.85 min. TLC Rf (EtOAc), 0.39. MS (ESPþ) found
m/z 502.14 [M þ H]þ, C23H21F6N3O3 requires 501.15. 1H NMR 250
MHz (CDCl3): δ 8.27 (br s, 1H), 7.78 (m, 3H), 7.37-6.99 (m, 5H),
5.41 (m, 1H), 5.29 (d, 1H, J = 16.8 Hz), 4.53 (m, 3H), 4.00 (d, 1H, J =
16.8 Hz), 3.79 (d, 1H, J = 16.8 Hz), 3.45 (dd, 1H, J1 = 17.7 Hz, J2 = 5.5
Hz), 2.95 (dd, 1H, J1 = 17.3 Hz, J2 = 13.7 Hz), 2.04 (s, 3H). 13C NMR
(CDCl3): δ 171.8, 169.0, 168.2, 141.2, 135.0, 132.4, 131.2, 130.6, 130.3,
128.2, 127.6, 127.3, 125.7, 120.3, 52.6, 50.9, 48.3, 41.6, 35.7, 22.6
Boc-(S)-Aba-Gly-NMe-30,50-(CF3)2-Bn. After flash chromatography
(EtOAc/hexane 1:1), the desired compound was obtained (white solid,
81%). HPLC (standard gradient): tret, 18.9 min. TLC Rf (EtOAc/
hexane 1:1): 0.49. MS (ESPþ) found m/z 574 [M þ H]þ,
C27H29F6N3O4 requires 573.21. 1H NMR 250 MHz (CDCl3): δ 7.81
(s, 1H), 7.66 (s, 2H), 7.00-7.25 (m, 4H), 5.89 (d, 1H, J = 5.3 Hz), 5.34
(d, 1H, J = 15.9 Hz), 5.26 (m, 1H), 4.78 (s, 1H), 4.71 (s, 1H), 4.51 (d,
1H, J = 15.9 Hz), 4.00 (m, 2H), 3.51 (dd, 1H, J1 = 16 Hz and J2 = 4.4 Hz),
3.02 (m, 1H), 2.96 (s, 3H), 1.47 (s, 9H). 13C NMR (CDCl3): δ 173.1,
168.5, 155.2, 139.3, 135.7, 132.4, 132.7, 131.9, 130.9, 128.6, 128.1, 126.5,
126.2, 121.8, 79.9, 53.2, 51.0, 49.5, 49.3, 37.2, 34.7, 28.3
Peptide Synthesis. Peptide 36 was synthesized manually by NR-Fmoc
solid phase methodology on Rink amide resin (0.189 mmol scale) using
DIC and HOBt as the coupling reagents. A 3-fold excess of the building
blocks [Fmoc-Aba-Gly-OH, Fmoc-D-Arg(Pbf)-OH, and Fmoc-Dmt-OH]
and activating agents was applied in the presence of a 9-fold excess of
diisopropylethylamine, and dry DMF was used as a solvent. Fmoc
deprotections were carried out by treating the resin twice (5 and
15 min) with 20% piperidine in DMF. Final cleavage of the peptide as
well as the Pbf side chain protection group removal was accomplished
by treatment with TFA/TES/water 90:5:5 for 90 min. The peptide
was isolated and purified by RP-HPLC on a Supelco DiscoveryBIO
wide pore preparative C18 column in 45% overall yield and was >95%
pure as determined by analytical RP-HPLC. The structure of pure
compound 36 was confirmed by high-resolution electrospray ioniza-
tion (ESP) mass spectrometry.
Ac-(S)-Aba-Gly-NMe-30,50-(CF3)2-Bn (20). Preparative HPLC yielded
the desired compound 20 (white powder, 47%). HPLC (standard
gradient): tret, 15.69 min. TLC Rf (EtOAc/hexane 1:1), 0.40. MS
(ESPþ) found m/z 516 [M þ H]þ, C24H23F6N3O3 requires 515.16.
1H NMR 250 MHz (CDCl3): δ 7.82 (s, 1H), 7.69 (d, 2H), 7.31-6.96
(m, 4H), 5.49 (m, 1H), 5.36 (d, 1H, J = 17.2 Hz), 4.80 (d, 1H, J = 7.2
Hz), 4.74 (d, 1H, J = 7.2 Hz), 4.51 (d, 1H, J = 17.2 Hz,), 4.51 (d, 1H, J =
17.0 Hz), 3.99 (m, 2H), 3.58 (dd, 1H, J1 = 17.6 Hz, J2 = 5.6 Hz), 2.98 (s,
3H), 2.10 (s, 3H). 13C NMR (CDCl3): δ 172.2, 170.2, 168.2, 139.3,
135.5, 132.4, 132.5, 131.9, 131.0, 128.6, 128.3, 128.0, 126.3, 121.4, 53.5,
51.0, 48.7, 49.5, 36.3, 34.8, 23.1
Hybrid 35 was prepared through a two-step approach. First, Boc-
Dmt-D-Arg(Pbf)-Aba-Gly-OH was prepared on 2-chlorotrityl resin
(0.15 mmol). Fmoc-Aba-Gly-OH (1.2 equiv) and DIPEA (5 equiv) in
CH2Cl2 were added to the swollen solid support, and the reaction
mixture was shaken overnight. The resin was washed three times with
DMF and three times with CH2Cl2. Subsequently, Fmoc-D-Arg(Pbf)-
OH and Boc-Dmt-OH were coupled as described above. The protected
C-terminal free acid Boc-Dmt-D-Arg(Pbf)-Aba-Gly-OH 33 was ob-
tained after treatment of the resin with 1% v/v TFA in CH2Cl2 for 30
min. The obtained crude peptide was obtained after removal of the
solvent in vacuo. The crude peptide was pure enough to be used directly
in the second step, the coupling step with N-methyl-30,50-bistrifluor-
omethyl benzylamine. This reaction was carried out on 33 (0.043 mmol)
in CH2Cl2 (10 mL) after adding BOP (1.1 equiv) in the presence of
DIPEA (2.5 equiv) and using CH2Cl2 as a solvent. After the reaction
mixture was stirred for 3 h, an extraction with saturated sodium
bicarbonate (5 mL) was performed, and the organic phase was dried
over magnesium sulfate, and the solvent was removed. After final
treatment with TFA/CH2Cl2/anisole 49:49:2 for 2 h, evaporation of
the solvent under vacuum yielded crude compound 35, which was
purified and characterized by preparative RP-HPLC and HRMS as
mentioned above.
Boc-Tic-NMe-30,50-(CF3)2-Bn. After flash chromatography (EtOAc/
hexane 1:1), the desired compound was obtained with a yield of 90%
(white solid, 65 mg). HPLC (standard gradient): tret, 19.85 min. TLC Rf
(EtOAc/hexane 1:1), 0.75. MS (ESPþ) found m/z 517 [M þ H]þ,
C25H26F6N2O3 requires 516.18. 1H NMR 250 MHz (CDCl3): δ (cis/
trans) 7.80 (s, 1H), 7.68 (s, 2H), 7.07-7.25 (m, 4H), 5.31 (t, 1H, J = 5.5
Hz), 5.15 (t, 1H, J = 5.5 Hz), 4.80 (m, 2H), 4.53 (m, 2H), 3.14 (s, 3H),
3.05 (m, 2H), 1.50 and 1.37 (2s, 9H). 13C NMR (CDCl3): δ (cis/trans)
172.6, 155.2, 140.0, 134.4, 132.1, 131.8, 128.4, 127.8, 127.0, 126.7, 125.8,
124.3, 121.4, 80.7, 50.8, 50.7, 46.0, 45.0, 35.2, 34.9, 31.2, 29.8, 28.3
Ac-Tic-NMe-30,50-(CF3)2-Bn (23). Purification was performed by
preparative HPLC (51%, white powder). HPLC (standard gradient):
tret, 16.82 min. TLC Rf (EtOAc/hexane 1:1), 0.72. MS (ESPþ) found m/
z 459 [M þ H]þ, C22H20F6N2O2 requires 458.14. 1H NMR 250 MHz
(CDCl3): δ(cis/trans mixture) 7.77 (s, 1H), 7.65 (s, 2H), 7.29-7.14 (m,
4H), 5.41 (pseudo t, 1H, J = 6.0 Hz), 4.80-4.63 (m, 4H), 3.18 (s, 3H),
3.12 (m, 2H), 2.26 (s, 3H). 13C NMR (CDCl3): δ(cis/trans mixture)
172.4, 170.6, 139.8, 133.7, 132.9, 132.7, 130.5, 127.9, 127.8, 127.0, 125.6,
121.5, 51.8, 50.4, 47.4, 35.6, 30.9, 21.8
H-Dmt-D-Arg-Aba-Gly-NH2 (36). Preparative HPLC yielded the
desired compound (white powder, 45%). HPLC (standard gradient):
tret, 8.73 min. TLC Rf (EBAW), 0.19. HRMS (ESPþ) found m/z
581.3199 [M þ H]þ, C29H41N8O5 requires 581.3195.
Compound Characterization. Boc-(S)-Aba-Gly-NH-30,50-(CF3)2-
Bn. Flash chromatography (EtOAc/hexane 1:1) yielded the desired com-
pound (white solid, 83%). HPLC (standard gradient): tret, 19.3 min. TLC Rf
(EtOAc/hexane 1:1), 0.43. MS (ESPþ) found m/z 560 [M þ H]þ,
H-Dmt-D-Arg-Aba-Gly-NMe-30,50-(CF3)2Bn (35). Preparative HPLC
yielded the desired compound (white powder, 54%). HPLC (standard
gradient): tret, 14.19 min. TLC Rf (EBAW), 0.33. HRMS (ESPþ) found
m/z 821.3580 [M þ H]þ, C39H47F6N8O5 requires 821.3574.
1
C26H27F6N3O4 requires 559.19. H NMR 250 MHz (CDCl3): δ 7.78
(s, 1H), 7.65 (s, 2H), 7.30-7.02 (m, 4H), 6.72 (br s, 1H), 5.73 (d, 1H, J=7.2
2474
dx.doi.org/10.1021/jm1016285 |J. Med. Chem. 2011, 54, 2467–2476