triethylamine (0.070 mL, 0.5 mmol) and N-α-t-BOC-N-ε-CBZ-
lysine-N-hydroxsuccinimide ester (239 mg, 0.5 mmol, Aldrich).
The suspension was stirred at room temperature for 24 h and
then analyzed by HPLC using a YMC, 3 micron, C18, 4.0 ×
50 mm column and a 10 min gradient of 10 → 90% MeCN/
water (with 0.05% TFA) at a flow rate of 1.0 mL min−1 and UV
detection at 260 nm. Product was observed eluting at 6.2 min.
The product was purified by preparative HPLC using a YMC,
10 micron, C18, 30 × 250 mm column and a 30 min gradient of
10 → 70% MeCN/water (with 0.05% TFA) at a flow rate of
20 mL min−1. The product fraction was collected, frozen at
−80 °C and lyophilized. The product, compound vii, was
obtained as a white powder. Yield = 225 mg (79%); HPTLC
(3 : 7, MeCN : water with 0.05% TFA) Rf 0.31; 1H-NMR
(500 MHz, CF3COOD) δ 1.59 (s, 9H), 1.61 (m, 2H), 2.00 (m,
2H), 2.42 (m, 2H), 3.20–3.27 (m, 9H), 3.37 (m, 2H), 3.59–3.79
(m, 6H), 4.26 (m, 1H), 4.37 (m, 1H), 5.19 (s, 2H), 7.30 (m, 5H);
MALDI-TOF MS m/z 572.6 (M + H)+; HRMS m/z 573.2955 (M
+ H)+ (573.2958 calculated).
pressure to afford a white sticky solid which was used as such in
the next reaction. Yield = 45 mg (quantitative); MALDI-TOF
MS m/z 504.4 (M + H)+ (504.3 calculated).
A solution of crude compound x (24 mg, 0.0386 mmol) and dis-
uccinimidyl glutarate (DSG, 50 mg, 4 equivalents, Thermo) in
anhydrous DMSO (2 mL) was treated with triethylamine (6 μL,
1.1 equivalents). The reaction was stirred at room temperature.
After 15 min, HPLC analysis was performed as described pre-
viously. Product was observed eluting at 24 min. The product
was purified by preparative HPLC as described previously. The
HPLC fractions containing product were frozen at −80 °C and
lyophilized to dryness. Yield = 8 mg (30%); HPTLC (3 : 7,
1
MeCN : water with 0.05% TFA) Rf 0.63; H-NMR (500 MHz,
CF3COOD) δ 1.47–1.55 (m, 2H), 1.73 (m, 2H), 1.79–1.95 (m,
2H), 2.02–2.69 (m, 4H), 2.43–2.62 (m, 4H), 2.68 (t, 2H, J =
6.7), 2.75 (t, 2H, J = 6.7), 3.03 (s, 4H), 3.23 (s, 6H), 3.38 (m,
2H), 3.45–3.56 (m, 2H), 3.61 (br t, 2H), 3.69–3.77 (m, 4H),
3.85 (m, 2H), 3.93 (m, 2H), 4.52 (br t, 1H), 6.88 (s, 2H); MAL-
DI-TOF MS m/z 717.1 (M + H)+; HRMS m/z 715.2954
(M + H)+ (715.2973 calculated).
Compound ix. Compound vii (200 mg, 0.35 mmol) was added
to a mixture of MeOH and H2O (95/5, 20 mL). Then, 10% of
palladium on carbon (20 mg) was added. The resulting suspen-
sion was hydrogenated at room temperature using a balloon for
4 h. The reaction mixture was then filtered. The filtrate was con-
centrated under reduced pressure at room temperature. The
desired product, compound viii, was obtained as a clear oil and
was used as such for the next reaction. Yield = 176 mg (quanti-
5. Hydrophobic peptide labeling (Fig. 2 and Figures S12–
S14, supplementary material†) with zwitterionic reagent 1. The
following is an illustrative procedure for the labeling of penta
(phenylalanine) with compound 1, as shown in Fig. 2. A sol-
ution of penta(phenylalanine) (2 mg, 2.65 μmol, Aldrich) in
DMSO (0.8 mL) was treated with compound 1 (2 mg, 4.8 μmol)
dissolved in DMSO (0.2 mL) followed by aqueous sodium car-
bonate (0.2 mL, 100 mM, pH 9). The reaction was stirred at
room temperature for 16 h. HPLC analysis of a small portion of
the reaction mixture was performed using a Phenomenex,
10 micron, C18, 3.9 × 300 mm column and a 30 min gradient of
10 → 100% MeCN/water (with 0.05% TFA) at a flow rate of
1.0 mL min−1 and UV detection at 220 and 260 nm. The labeled
peptide 6 was observed to elute at 18.5 min. The crude reaction
mixture was purified by HPLC using a YMC, 10 micron, C18,
30 × 250 mm column and a 30 min gradient of 10 → 100%
MeCN/water (with 0.05% TFA) above at a flow rate of 20 mL
min−1. HPLC fractions containing product were frozen at
−80 °C and lyophilized to dryness to afford a fluffy white solid.
Yield = 2.4 mg (92%); MALDI-TOF MS m/z 988.4 M+ (988.4
calculated).
tative); MALDI-TOF MS m/z 440.3 (M
+
H)+ (439.3
calculated).
A solution of compound viii (176 mg, 0.4 mmol) in anhydrous
DMSO (4 mL) was treated with 4-maleimidobutyric acid N-
hydroxsuccinimide ester (50 mg, 0.178 mmol, Thermo) and tri-
ethylamine (0.054 mL, 0.4 mmol). The reaction was stirred at
room temperature. After 1–2 h, HPLC analysis was performed
using a Phenomenex, 10 micron, C18, 3.9 × 300 mm column and
a 40 min gradient of 0 → 40% MeCN/water (with 0.05% TFA)
at a flow rate of 1.0 mL min−1 and UV detection at 260 &
220 nm. Product was observed eluting at 27.5 min. The crude
reaction mixture was purified by HPLC using a YMC,
10 micron, C18, 30 × 250 mm column and a 40 min gradient of
0 → 40% MeCN/water (with 0.05% TFA) at a flow rate of
20 mL min−1. The HPLC fractions containing product were
frozen at −80 °C and lyophilized to dryness. Yield = 45 mg
(40%); HPTLC (3 : 7, MeCN : water with 0.05% TFA) Rf 0.59;
1H-NMR (500 MHz, CF3COOD) δ 1.59 (s, 9H), 1.74 (br t, 2H),
2.07 (br t, 4H), 2.44 (m, 2H), 2.62 (br t, 2H), 3.23 (s, 3H), 3.27
(s, 3H), 3.37 (m, 2H), 3.51 (m, 2H), 3.61–3.82 (m, 8H), 4.28
(m, 1H), 4.43 (m, 1H), 6.88 (s, 2H); MALDI-TOF MS m/z
604.9 (M + H)+; HRMS m/z 604.3013 (M + H)+ (604.3016
calculated).
Compound 5. A solution of compound ix (25 mg, 41 μmol) in
trifluoroacetic acid (2 mL) was stirred in an ice-bath for 3 h.
Anhydrous ether (75 mL) was then added to the reaction mixture
to precipitate the product which was collected by filtration and
rinsed with ether. The product was then dissolved in methanol
(15–20 mL) and analyzed by HPLC as described above.
Product, compound x, was observed eluting at 13.7 min (com-
plete conversion). The methanol solution was diluted with anhy-
drous toluene (10 mL) and was concentrated under reduced
The other two peptides Phe-Gly-Gly-Phe and penta(leucine)
were labeled in a similar manner.
Compound 7, Yield = 3.6 mg (quantitative); MALDI-TOF
MS m/z 660.8 M+ (661.3 calculated).
Compound 8, Yield = 1.2 mg (43%); MALDI-TOF MS m/z
820.4 (M + H)+ (819.5 calculated).
Aqueous solubility of the labeled peptides was estimated by
dissolving the lyophilized, zwitterion-labeled peptides 6, 7 and 8
in small quantities of de-ionized water (0.2 mL portions) at room
temperature followed by vortexing. Concentrations that afforded
homogeneous solutions were used to estimate the aqueous solu-
bility of the zwitterion-labeled peptide.
6. Synthesis of cross-linked peptide 9 from conjugation of
penta(phenylalanine) to the tetrapeptide Phe-Gly-Gly-Phe
(Fig. 3 and Figure S15, supplementary material†) using zwitter-
ionic, homobifunctional cross-linker 4
1892 | Org. Biomol. Chem., 2012, 10, 1883–1895
This journal is © The Royal Society of Chemistry 2012