Journal of Medicinal Chemistry
Article
the TMS and DSS signal at 0.0 ppm for DMSO and D2O solutions,
respectively. The ESI mass spectra were recorded on a PE Biosystems
Mariner mass spectrometer. Progress of the reaction was monitored by
thin layer chromatography (TLC) with Merck DC-Alufolien Kieselgel
60 F254. The chemicals and solvent were purchased from Fluka
Company. Column chromatography was performed on Merck silica
gel 60 (230−400 mesh). Measurement of optical rotation is performed
using a Jasco digital polarimeter P-2000, and measurements of optical
rotation are made at 589 nm at 20 °C. HPLC experiments were carried
out on a Waters HPLC system (Waters Associates, Milford, MA, U.S.)
consisting of a multisolvent delivery system 600E, a photodiode array
detector 2996, a Rheodyne model 7725i injector, chromatography
manager Empower 2 software for PC coputations, and Luna C-18
column (Phenomenex, U.S.) with 5 μm particles, 250 mm × 4.6 mm.
The detection was performed by using UV at λ = 275 nm. The
compound concentration was about 2.0 mg/mL, and the injection
volume was 20 μL. Method 1 was as follows: mobile phase consisting
of A (H2O + 0.1% TFA, v/v) and B (acetonitrile + 0.1% TFA, v/v)
was used with a linear gradient from 20% B to 100% B for 20 min (2a)
and from 30% B to 100% B for 20 min (3a, 7a). Method 2 was as
follows: mobile phase consisting of A (H2O + 0.05% TFA, v/v) and B
(acetonitrile) was used with a linear gradient from 10% B to 80% B for
20 min (9a). All key compounds were proven by HPLC method to
have ≥95% purity.
General Procedure for the Synthesis Compounds 2 and 3.
To a solution of Nα-protected L-amino acid (0.50 mM), TBTU (1
mM), and HOBt (1 mM) in DMF (3 mL) was added DIPEA (1.5
mM). The mixture was stirred for 15 min at room temperature. Then a
solution of 5,11-dimethyl-5H-indolo[2.3-b]quinolin-9-ylamine (1)
(0.76 mM) in 2 mL of DMF was added, and the reaction mixture
was stirred at room temperature for 6−24 h (TLC monitoring). After
the reaction was completed, the solvent was evaporated under reduced
pressure at ∼40 °C. The resulting oil was treated with water and
CHCl3, and the organic layer was separated and washed successively
with aqueous NaHCO3 solution and aqueous NaCl solution. The
extract was dried over anhydrous MgSO4, filtered, and evaporated to
dryness.
d, J = 8.1 Hz), 7.63 (1H, m), 7.49 (1H, d, J = 1.8 Hz), 6.74 (1H, d, J =
8.3 Hz), 6.47 (1H, dd, J = 1.8 and 8.3 Hz), 3.78 (2H, m), 3.74 (3H, s),
2.51 (3H, s). 13C NMR (150.83 MHz, D2O) [ppm]: 166.9, 151.4,
147.0, 136.9, 136.72, 136.70, 135.1, 129.1, 128.8, 124.6, 122.8, 121.2,
119.6, 118.6, 114.7, 114.3, 43.6, 38.2, 18.2. ESI-MS: calcd for (M +
H)+, 319.3; found, 319.3. Anal. Calcd for C19H18N4O·2H2O·2HCl: C
53.40, H 5.66, N 13.11, Cl 16.59. Found: C 53.54, H 5.67, N 13.07, Cl
16.58. Purity (HPLC): 99.3%.
N-(5,11-Dimethyl-5H-indolo[2,3-b]quinolin-9-yl)-L-prolyla-
mide Dihydrochloride (3a). Compound 3 (115 mg, 0.25 mM) was
treated with 2.2 M HCl/CH3OH (2 mL) with stirring for 3 h (TLC
monitoring). When TLC showed that the Boc group was completely
removed, the precipitated salt 3a was collected by filtration and
recrystallized from ethyl acetate/diethyl ether. Yield 97 mg (87%). Mp
(°C): 255. IR: 3411, 2943, 1675, 1640, 1575, 1477, 1269, 764 cm−1.
1H NMR (500 MHz, D2O) [ppm]: 8.34 (1H, d, J = 8.5 Hz), 8.08 (1H,
s), 8.07 (1H, m), 8.00 (1H, d, J = 8.5 Hz), 7.79 (1H, m), 7.29 (1H, d, J
= 8.0 Hz), 7.17 (1H, d, J = 8.0 Hz), 4.50 (1H, dd, J = 6.5 and 8.5 Hz),
4.12 (3H, s), 3.58 (2H, m), 2.95 (3H, s), 2.66 (1H, m), 2.23 (3H, m).
13C NMR (125.68 MHz, D2O) [ppm]: 169.8, 151.8, 148.3, 138.4,
137.3, 136.4, 134.9, 129.1, 128.5, 125.1, 124.2, 122.4, 120.7, 118.7,
117.0, 114.9, 62.7, 49.2, 38.1, 32.6, 26.4, 18.2. ESI-MS: calcd for (M +
H)+, 359.3; found, 359.3. Anal. Calcd for C22H22N4O·2H2O·2HCl: C
56.53, H 6.04, N 11.99 Cl 15.17. Found: C 56.97, H 6.27, N 12.05, Cl
15.20. Purity (HPLC): 98.4%. [α]2D0 −12.3 (c 0.1, H2O)
General Procedure for the Synthesis 7 and 9. To a solution of
Nα-protected amino acid (0.8 mM) in DMF (6 mL) were added
TBTU (0.8 mM), HOBt (0.8 mM), and DIPEA (0.4 mL, 2.2 mM) at
room temperature, and the solution was stirred for 15 min. Next 2a
(0.5 mM) was added to the solution, and the reaction mixture was
stirred for 24 h. After the reaction was completed the solvent was
evaporated under reduced pressure at ∼40 °C. The resulting oil was
treated with water and CHCl3, and the organic layer was separated and
washed successively with aquoeus NaHCO3 solution and aqueous
NaCl solution. The extract was dried over anhydrous MgSO4, filtered,
and evaporated to dryness.
Nα-tert-Butyloxycarbonyl-N-(5,11-dimethyl-5H-indolo[2,3-
b]quinolin-9-yl)glycylglycylamide (7). Compound 7 was obtained
from Boc-Gly and 2a. The crude products were purified by
crystallization from ethyl acetate to afford compound 7 as an orange
crystal. Yield 231 mg (86%). Mp (°C): 240. IR: 3383, 2976, 2930,
Nα-tert-Butyloxycarbonyl-N-(5,11-dimethyl-5H-indolo[2,3-
b]quinolin-9-yl)glycylamide (2). Compound 2 was obtained as a
red solid from Boc-Gly-OH and 1. The crude product was
recrystallized from ethyl acetate. Yield 206 mg (65%). Mp (°C):
212−215. IR: 3278, 2976, 1688, 1651, 1569, 1523, 1461, 1249, 1167
cm−1. 1H NMR (500 MHz, DMSO-d6) [ppm]: 9.89 (1H, s), 8.56 (1H,
s), 8.29 (1H, d, J = 7.5), 7.92 (1H, d, J = 9.0 Hz), 7.83 (1H, m), 7.59
(1H, d, J = 9.0 Hz), 7.50 (1H, m), 7.49 (1H, d, J = 8.0 Hz), 4.23 (3H,
s), 3.76 (2H, d, J = 6.0 Hz), 3.07 (3H, s), 1.40 (9H, s). ESI-MS: calcd
for (M + H)+, 419.2; found, 419.2. Anal. Calcd for C24H26N4O3: C
68.88, H 6.26, N 13.39. Found: C 68.34, H 6.42, N 13.07.
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1684, 1639, 1534, 1482, 1367, 1228, 1169, 760 cm−1. H NMR (200
MHz, CD3OD) [ppm]: 8.83 (1H, br s), 8.63 (1H, d, J = 9.5 Hz), 8.32
(1H, d, J = 8.8 Hz), 8.13 (1H, m), 7.86 (1H, m), 7.76 (1H, d, J = 8.8
Hz), 7.62 (1H, d, J = 8.8 Hz), 4.45 (3H, s), 4.09 (2H, s), 3.82 (2H, s),
3.33 (3H, s), 1.47 (9H, s). ESI-MS: calcd for (M + H)+, 476.3; found,
476.3. Anal. Calcd for C26H29N5O4·H2O: C 63.27, H 6.33, N 14.19.
Found: C 63.31, H 6.31, N 14.12.
Nα-tert-Butyloxycarbonyl-N-(5,11-dimethyl-5H-indolo[2,3-
b]quinolin-9-yl)-L-prolylamide (3). Compound 3 was obtained as
an orange solid from Boc-L-Pro and 1. The crude product 3 was
purified by chromatography on silica gel column with CHCl3/
CH3OH, 9:1 (v/v), and crystallized from diethyl ether. Yield 187 mg
(45%). Mp (°C): 210−212. IR: 3311, 2975, 1673, 1635, 1525, 1460,
Nα-tert-Butyloxycarbonyl-N-(5,11-dimethyl-5H-indolo[2,3-
b]quinolin-9-yl)-L-prolylglycylamide (9). Compound 9 was
obtained from Boc-L-Pro and 2a. The crude products were purified
by crystallization from ethyl acetate to afford compound 9 as an orange
crystal. Yield 186 mg (84%). Mp (°C): 225−227. IR: 3436, 3302,
2973, 1703, 1675, 1565, 1168, 747 cm−1. 1H NMR (200 MHz,
DMSO-d6) (two rotamers) [ppm]: 10.28 and 9.85 (1H, s and s), 8.77
and 8.73 (1H, s and s), 8.53 (1H, d, J = 8.4 Hz), 8.23 (1H, d, J = 8.4
Hz), 8.05 (1H, m), 7.98 (1H, d, J = 8.4 Hz), 7.74 (1H, m), 7.67 (1H,
d, J = 9.0 Hz), 4.39 (3H, s), 4.19 (1H, m), 3.94 (2H, m), 3.60 (2H,
m), 3.23 (3H, s), 2.16 (1H, m), 1.86 (3H, m), 1.41 and 1.37 (9H, s
and s). ESI-MS: calcd for (2M + H)+ 1031.6, (M + H)+ 516.3; found,
1031.6, 516.3. Anal. Calcd for C29H33N5O4·3H2O: C 61.14, H 6.90, N
12.29. Found: C 59.84, H 6.87, N 12.29.
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1166, 748 cm−1. H NMR (500 MHz, DMSO-d6) (two rotamers)
[ppm]: 9.98 (1H, s), 8.67 and 8.64 (1H, s and s), 8.33 (1H, d, J = 8.0
Hz), 7.96 (1H, d, J = 8.5 Hz), 7.86 (1H, m), 7.61 (1H, dd, J = 1.0 and
8.5 Hz), 7.53 (2H, m), 4.29 (1H, m), 4.27 (3H, s), 3.47 (1H, m), 3.38
(1H, m), 3.11 (3H, s), 2.25 (1H, m), 1.96 (2H, m), 1.83 (1H, m), 1.43
and 1.33 (9H, s and s). ESI-MS: calcd for (M + H)+, 459.3; found,
459.3. Anal. Calcd for C27H30N4O3·2H2O: C 65.57, H 6.93, N 11.33.
Found: C 65.44, H 6.76, N 11.43.
N-(5,11-Dimethyl-5H-indolo[2,3-b]quinolin-9-yl)glycylamide
Dihydrochloride (2a). Compound 2 (206 mg, 0.49 mM) was treated
with 2.2 M HCl/CH3OH (3 mL) with stirring for 2 h (TLC
monitoring). When TLC showed that the Boc group was completely
removed, the precipitated salt 2a was collected by filtration and
recrystallized from ethyl acetate. Yield 153 mg (80%). Mp (°C): 270.
N-(5,11-Dimethyl-5H-indolo[2,3-b]quinolin-9-yl)-
glycylglycylamide Dihydrochloride (7a). Compound 7 (124.1 mg,
0.26 mM) was treated with 2.2 M HCl/CH3OH (3 mL) with stirring
for 1 h (TLC monitoring). When TLC showed that Boc group was
completely removed, the precipitated salt 7a was collected by filtration
and recrystallized from ethyl acetate. Yield 110 mg (94%). Mp (°C):
252−254. IR: 3330, 3100, 1788, 1682, 1645, 1430, 1200, 1135, 795
1
IR: 3418, 2957, 1682, 1642, 1573, 1476, 1240 cm−1. H NMR (600
1
MHz, D2O) [ppm]: 8.00 (1H, d, J = 8.1 Hz), 7.91 (1H, m), 7.70 (1H,
cm−1. H NMR (500 MHz, DMSO-d6 with small addition of H2O)
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dx.doi.org/10.1021/jm300468t | J. Med. Chem. 2012, 55, 5077−5087