Antifungal Tobramycin Analogues
ml) and brine (10 ml), dried over anhydrous MgSO4, and filtered. The
solvents were removed under reduced pressure, and the crude product
obtained was purified by flash column chromatography (SiO2; pure
hexanes to hexanes:EtOAc in a 2:3 ratio) to afford compound 2a (0.19 g;
Antifungal susceptibility testing. In vitro MIC values for the C4 to C14
TOB analogues against yeast cells were evaluated in 96-well plates as de-
scribed in CLSI document M27-A3 (18) with minor modifications. Yeast
cells were grown in RPMI 1640 for 48 h, counted using a hemocytometer,
and diluted to a concentration of 5 ϫ 104 cells/ml in fresh RPMI 1640. Cell
suspensions (200 l) containing 0.97 to 125 mg/liter of TOB analogue,
0.97 to 62.5 mg/liter of POS, 0.97 to 62.5 mg/liter of ITC, or 0.97 to 125
mg/liter of FLC were added to the wells of a 96-well microtiter plate and
incubated for 48 h at 35°C. The final concentration of DMSO was ensured
to be Ͻ2% in all experiments. Growth of C. albicans 10231 (strain A) was
not affected by this concentration of DMSO. The MIC values of TOB
analogues were defined as the minimum drug concentration that yielded
complete inhibition, or the MIC-0. MIC values of azoles for yeasts were
determined as the lowest drug concentration that produced at least 50%
growth inhibition (i.e., MIC-2) compared with the growth control well. It
is important to note that at the lowest concentration tested, the growth of
C. neoformans MYA-895 (H) was completely inhibited. For testing azoles
against molds, on the other hand, the MIC-0 endpoint was used.
1
76%) as a white solid: H NMR (400 MHz, CD3OD) ␦ 5.07 (br s, 1H,
H-1=), 5.02 (br s, 1H, H-1Љ), 4.05 (m, 1H, H-5Љ), 3.70 to 3.28 (m, 13H,
H-1, H-3, H-4, H-5, H-6, H-2=, H-4=, H-5=, H-6= (2H), H-2Љ, H-3Љ, H-4Љ),
2.97 (br dd, J1 ϭ 14.4 Hz, J2 ϭ 2.2 Hz, 1H, H-6Љ), 2.62 (m, 1H, H-6Љ), 2.58
[t, J ϭ 7.6 Hz, 2H, SCH2(CH2)2CH3], 2.12 (m, 1H, H-2eq), 1.99 (m, 1H,
H-3=eq), 1.66 to 1.24 [m, 51H, H-2ax, H-3=ax, 5 ϫ CO2(CH3)3,
SCH2(CH2)2CH3], 0.90 [t, J ϭ 7.6 Hz, 3H, SCH2(CH2)2CH3]; 13C NMR
(100 MHz, CD3OD) ␦ 158.0, 157.9, 156.5, 156.4 (2 carbons), 98.6 (ano-
meric carbon), 98.1 (anomeric carbon), 82.9, 81.1, 79.3, 79.0 (2 carbons),
78.9, 78.7, 75.8, 72.5 (2 carbons), 72.1, 70.7, 65.0, 55.7, 50.0, 49.8, 49.6,
40.5, 34.4, 33.3, 32.9, 32.4, 31.6, 27.4 to 27.3 (15 carbons), 21.6, 12.7.
ProtocolforBocdeprotection[e.g., synthesisofcompound3a(C4)].
The amphiphilic TOB analogues C6 to C14 (compounds 3b to f) were
synthesized from 2b to f as previously described (Fig. 1) (7). For the
preparation of the novel analogue 3a (C4), compound 2a (46 mg, 0.044
mmol) was treated at RT with neat trifluoroacetic acid (TFA; 1 ml) for
3 min. The TFA was removed under reduced pressure, and the residue
was dissolved in a minimal volume of H2O and freeze-dried to afford
the novel 6Љ-thioether TOB derivative 3a (C4; 49 mg, 98%) as a white
foam: 1H NMR (400 MHz, D2O) ␦ 5.74 (d, J ϭ 3.6 Hz, 1H, H-1=), 5.10
(d, J ϭ 4.0 Hz, 1H, H-1Љ), 4.05 to 3.93 (m, 4H, H-4, H-5=, H-2Љ, H-5Љ),
3.89 (app. t, J1 ϭ J2 ϭ 9.2 Hz, 1H, H-5), 3.82 to 3.54 (m, 6H, H-1, H-3,
H-6, H-2=, H-4=, H-4Љ), 3.46 (app. t, J1 ϭ J2 ϭ 10.4 Hz, 1H, H-3Љ), 3.43
(dd, J1 ϭ 13.6 Hz, J2 ϭ 3.6 Hz, 1H, H-6=), 3.28 (dd, J1 ϭ 13.6 Hz, J2 ϭ
6.4 Hz, 1H, H-6=), 3.05 (dd, J1 ϭ 14.4 Hz, J2 ϭ 2.4 Hz, 1H, H-6Љ), 2.78
(dd, J1 ϭ 14.4 Hz, J2 ϭ 8.0 Hz, 1H, H-6Љ), 2.63 [t, J ϭ 7.6 Hz, 2H,
SCH2(CH2)2CH3], 2.57 (app. dt, J1 ϭ 12.4 Hz, J2 ϭ J3 ϭ 4.4 Hz, 1H,
H-2eq), 2.57 (app. dt, J1 ϭ 12.0 Hz, J2 ϭ J3 ϭ 4.4 Hz, 1H, H-3=eq), 2.03
(app. q, J1 ϭ J2 ϭ J3 ϭ 12.4 Hz, 1H, H-2ax), 1.95 (app. q, J1 ϭ J2 ϭ
J3 ϭ 12.8 Hz, 1H, H-3=ax), 1.58 (p, J ϭ 7.6 Hz, 2H, SCH2CH2CH2CH3), 1.39
(sextet, J ϭ 7.6 Hz, 2H, SCH2CH2CH2CH3), 0.89 [t, J ϭ 7.6 Hz, 3H,
SCH2(CH2)2CH3]; 13C NMR (100 MHz, D2O) ␦ 100.5 (anomeric carbon),
94.5 (anomeric carbon), 83.8, 77.6, 74.1, 72.5, 70.2, 68.0, 67.8, 64.2, 54.5, 49.3,
48.1, 47.8, 39.7, 32.2, 32.0, 30.9, 29.2, 27.7, 21.1, 12.7. Notethatcompounds3a
to f were stored at Ϫ20°C as a 10-g/liter stock solution in ddH2O.
Antibacterial susceptibility testing. MIC values of TOB analogues
(C4 to C14) were determined by using the microdilution broth method
for aerobic and anaerobic organisms according to CLSI standardized
methodology (16, 17) with minor modifications. A variety of Gram-
positive and Gram-negative bacteria were diluted 1:1,000 from over-
night cultures into fresh medium and grown to an optical density of
ϳ0.4 at 600 nm, or on average, for 4 h. To prepare bacteria for MIC
determinations, an additional 1:1,000 dilution of turbid culture was
performed. Briefly, solutions of the studied compounds were added to
the optimal medium for each bacterial strain (i.e., LB for MRSA [Bϩ],
S. aureus NorA [Fϩ], S. epidermidis ATCC 12228 [Hϩ], S. pyogenes
ATCC 12384 [Iϩ], E. coli ⌬7 wt [BϪ], E. coli ⌬7 A1408G [CϪ], E. coli ⌬7
G1491U [DϪ], E. coli MC1061 [EϪ], K. pneumoniae ATCC 27736 [GϪ],
and S. flexniri 2475T pgm-24 [JϪ]; brain heart infusion (BHI) for E.
faecium BM4105-RF [Aϩ], L. monocytogenes ATCC 19115 [Bϩ], and S.
aureus NRE22 USA600 [Gϩ]; supplemented BHI for H. influenzae ATCC
51907 [FϪ]; tryptic soy medium for E. coli ATCC 25922 [AϪ], P. aerugi-
nosa ATCC 27583 [HϪ], and P. aeruginosa PAO1 [IϪ]; 7H9 for M. smeg-
matis MC2 155 [Eϩ]; 7H9 with ADC for M. parascrofulaceum ATCC
BAA-614 [Dϩ]), and a double dilution was performed (100 l) in a mi-
crotiter plate. The diluted bacterial cultures were then added to these
medium-drug mixtures (100 l). The microtiter plate cultures were
grown for 16 to 20 h and visually inspected for growth. MIC values were
defined as the concentration of the drug in the last well showing no bac-
terial growth.
The minimal fungicidal concentration (MFC) values for the C12 and
C
14 TOB analogues were determined as previously described (19, 20) with
minor modifications. To determine MFCs, yeast cells of 1 ϫ 104 CFU/ml
were used to perform broth microdilution assays as described above. After
48 h of incubation, all of the MIC wells with no visible growth were
homogenized with a micropipette, and aliquots of 20 l cell content were
spread on Sabouraud’s dextrose agar (SDA; Difco, BD, Franklin Lakes, NJ,
USA). The plates were incubated for 24 to 48 h at 35°C for colony counts.
The MFC was defined as the lowest drug concentration that killed 99% of
the final inoculum (with Յ3 colonies on SDA plates, in agreement with a
previous report [21]). Each test was performed in triplicate.
In vitro MIC values for these analogues against A. nidulans ATCC
38163 (I) and F. graminearum 053 (J) were conducted as previously de-
scribed in CLSI document M38-A2 (22). Spores were collected from spo-
rulating cultures growing in potato dextrose agar (PDA) by filtration
through sterile glass wool and enumerated using a hemocytometer to
obtain the desired inoculum size. Serial dilutions of TOB analogues as well
as POS, ITC, and FLC were made in sterile 96-well plates in the ranges of
0.97 to 125 mg/liter (for TOB analogues), 0.097 to 12.5 mg/liter (for POS
and ITC), and 0.97 to 62.5 mg/liter (for FLC) using RPMI, and spore
suspensions were added to make a final concentration of 5 ϫ 105 CFU/ml.
The plates were incubated at 35°C for 48 h (except for F. graminearum 053
[J], which was incubated at room temperature). The MIC values of azoles
and TOB analogues against molds were based on the complete inhibition
of growth compared to the growth control, or the MIC-0 (18, 22). Each
test was performed in triplicate.
Antifungal carryover and time-kill studies. Prior to performing
time-kill studies, antifungal carryover effects were evaluated as previously
described (19). C. albicans ATCC 64124 (B) cell suspensions were pre-
pared to achieve an inoculum of approximately 1 ϫ 105 to 4 ϫ 105 CFU/
ml. An aliquot of 100 l of each suspension was added to 900 l of sterile
ddH2O (control) or to sterile ddH2O plus TOB analogue (C12 or C14) at
concentrations of 8, 16, or 32 mg/liter and 2, 4, or 8 mg/liter, respectively.
Immediately after addition of the fungal suspension, tubes were vortexed
and 100 l of suspension was removed and spread on PDA for colony
count determinations. Antifungal carryover was defined as a reduction in
colony counts of a sample by Ͼ25% compared to controls. Time-kill
curve studies were performed against the azole-resistant C. albicans strain
ATCC 64124 (B) as previously described (23) with modifications. The
initial inoculum used for this assay was 1 ϫ 105 CFU/ml in liquid RPMI
1640 medium at 35°C in 50 ml Falcon tubes (10-ml volume) with contin-
uous agitation (200 rpm). TOB analogues (C12 and C14) at concentrations
of 8, 16, or 32 mg/liter and 2, 4, or 8 mg/liter, respectively, were tested
against C. albicans ATCC 64124 (B). Test solutions were incubated at 200
rpm at 35°C. At 0, 3, 9, 12, and 24 h, 100-l aliquots were removed from
each solution and serially diluted in sterile ddH2O. Fifty microliters of
each dilution was spread onto a potato dextrose agar plate and incubated
August 2015 Volume 59 Number 8
Antimicrobial Agents and Chemotherapy