C. Melander et al.
MED
2H), 6.40 (s, 1H), 3.16 (t, J=7.2 Hz, 2H), 2.26 (t, J=7.6 Hz, 2H), 1.48
(m, 13H), 1.31 ppm (m, 2H); 13C NMR (100 MHz, CDCl3): d=150.7,
149.4, 138.5, 106.0, 84.2, 51.2, 28.5, 27.8, 27.7, 26.3, 26.2 ppm; IR
(neat): n˜ =3427, 3402, 3121, 2981, 2934, 2089, 1734, 1642, 1369,
1268, 1253, 1201, 1157, 1121, 884, 772 cmꢀ1; UV/Vis (CH2Cl2): lmax
(e)=259 nm; HRMS (FAB) m/z [M+H]+ calcd for C13H22N6O2:
295.1876, found 295.1885.
(100 MHz, CDCl3): d=173.8, 150.0, 149.7, 139.3, 136.3, 128.7, 128.4,
106.7, 84.8, 66.3, 34.5, 29.0, 28.2, 28.2, 25.0 ppm; IR (neat): n˜ =3454,
2935, 2860, 1734, 1643, 1456, 1370, 1253, 1160, 1123, 847, 773,
698 cmꢀ1; UV/Vis (CH2Cl2): lmax (e)=259 nm; HRMS (FAB) m/z [M+
H]+ calcd for C21H29N3O4: 388.2231, found 388.2218.
tert-Butyl 5-(6-(benzyloxy)-6-oxohexyl)-2-(bis(tert-butoxycarbo-
nyl)amino)-1H-imidazole-1-carboxylate (16): tert-Butyl 2-amino-5-
tert-Butyl
5-(5-azidopentyl)-2-(bis(tert-butoxycarbonyl)amino)-
(6-(benzyloxy)-6-oxohexyl)-1H-imida-zole-1-carboxylate
(2.214 g,
1H-imidazole-1-carboxylate (13): Boc-2-AI (1.751 g, 6 mmol) was
dissolved in dry THF (20 mL) in a 100 mL round-bottomed flask,
and the solution was treated with DMAP (0.073 g, 0.6 mmol) and
Boc2O (3.893 g, 17.9 mmol) and then stirred at RT for 12 h. The sol-
vent was removed in vacuo. Purification by column chromatogra-
phy (hexane/EtOAc, 9:1!1:1) gave desired product 13 as a pale
yellow oil (2.446 g, 83%): 1H NMR (400 MHz, CDCl3): d=6.94 (s,
1H), 3.09 (t, J=6.8 Hz, 2H), 2.37 (t, J=7.6 Hz, 2H), 1.41 (m, 13H),
1.25 ppm (m, 20H); 13C NMR (100 MHz, CDCl3): d=149.2, 146.2,
139.7, 137.4, 113.8, 85.3, 83.0, 51.1, 28.4, 28.0, 27.8, 27.6, 27.6,
25.8 ppm; IR (neat): n˜ =2979, 2936, 2863, 2096, 1807, 1752, 1585,
1537, 1458, 1395, 1370, 1276, 1254, 1150, 1119, 1100, 1019, 850,
772 cmꢀ1; UV/Vis (CH2Cl2): lmax (e)=244 nm; HRMS (FAB) m/z [M+
H]+ calcd for C23H38N6O6: 495.2926, found 495.2905.
5.7 mmol) was treated with DMAP (0.07 g, 0.6 mmol) and Boc2O
(3.739 g, 17.2 mmol) according to the same procedure described
for the synthesis of 13. Purification by column chromatography
(hexane/EtOAc, 4:1!1:1) afforded target product 16 as a pale
yellow oil (2.918 g, 87%): 1H NMR (400 MHz, CDCl3): d=7.30 (m,
5H), 7.04 (s, 1H), 5.06 (s, 2H), 2.46 (t, J=7.2 Hz, 2H), 2.30 (t, J=
7.6 Hz, 2H), 1.63 (m, 4H), 1.53 (s, 9H), 1.37 (s, 18H), 1.32 ppm (m,
2H); 13C NMR (100 MHz, CDCl3): d=173.5, 149.5, 146.6, 140.2,
137.6, 136.2, 128.6, 128.2, 114.0, 85.6, 83.3, 66.1, 34.3, 28.5, 28.4,
27.9, 27.7, 24.8 ppm; IR (neat): n˜ =2979, 2936, 2863, 1807, 1749,
1586, 1537, 1457, 1394, 1370, 1276, 1254, 1151, 1119, 1100, 1019,
850, 751, 69 cmꢀ1; UV/Vis (CH2Cl2): lmax (e)=244 nm; HRMS (FAB)
m/z [M+H]+ calcd for C31H45N3O8: 588.3279, found 588.3265.
N-(2-Aminoethyl)-4-pentylbenzamide (17): A vial (23ꢂ85 mm)
was charged with N-(2-azidoethyl)-4-pentylbenzamide 6 (0.2 g,
0.77 mmol) and anhydrous THF (6 mL), and the solution was treat-
ed with Pd/C (0.081 g, 0.08 mmol). The resulting solution was first
flushed with H2 for 5 min, and then stirred under 1 atm H2 for
12 h. The mixture was filtered through Celite, and the solvent was
evaporated in vacuo to deliver the desired crude primary amine,
which was used without further purification.
7-(Benzyloxy)-7-oxoheptanoic acid (15): A 1 L round-bottomed
flask was charged with heptanedioic acid 14 (6.403 g, 40 mmol)
and Ac2O (16.334 g, 160 mmol) in xylenes (500 mL). The reaction
was stirred at 1408C for 2 h. The solvent was then evaporated in
vacuo, and the resulting crude cyclic anhydride was redissolved in
BnOH (5 mL, 5.191 g, 48 mmol) and stirred at 608C for 12 h. Et2O
(30 mL) was added, and the reaction was extracted with saturated
aq NaHCO3 (3ꢂ20 mL). The combined aqueous extracts were acidi-
fied to pH 2 with 2n aq HCl. The acidic solution was then extract-
ed with Et2O (3ꢂ20 mL), and the combined organic extracts were
washed with brine (60 mL), dried over Na2SO4, filtered and concen-
trated in vacuo. The resulting residue was purified by column chro-
matography (hexane/EtOAc, 4:1!1:1) to afford target compound
3-(4-Pentylbenzamido)propanoic acid (19): A 50 mL round-bot-
tomed flask was charged with 4-pentylbenzoyl chloride 6 (1.054 g,
5 mmol) and anhydrous CH2Cl2 (6 mL). The mixture was cooled to
08C and treated with Et3N (1.012 g, 10 mmol) and b-analine
(0.534 g, 6 mmol) sequentially. The reaction was stirred for 12 h
while warming from 08C to RT. The resulting solution was treated
with 1n aq HCl (3 mL) and then extracted with CH2Cl2 (3ꢂ4 mL).
The combined organic extracts were washed with brine (12 mL),
dried over Na2SO4, filtered and concentrated in vacuo. The result-
ing residue was purified by column chromatography (hexane/
EtOAc, 2:1!1:2) to afford target compound 19 as a white solid
1
15 as a colorless oil (4.438 g, 44%): H NMR (400 MHz, CDCl3): d=
7.36 (m, 5H), 5.12 (s, 2H), 2.37 (t, J=8.0 Hz, 2H), 2.34 (t, J=7.6 Hz,
2H), 1.67 (m, 4H), 1.37 ppm (m, 2H); 13C NMR (100 MHz, CDCl3):
d=179.9, 173.6, 136.2, 128.8, 128.4, 66.4, 34.2, 34.0, 28.6, 24.7,
24.4 ppm; HRMS (FAB) m/z [M+H]+ calcd for C14H18O4: 251.1277,
found 251.1283.
1
(0.64 g, 45%): H NMR (400 MHz, CDCl3): d=10.32 (bs, 1H), 7.65 (d,
Benzyl 8-bromo-7-oxooctanoate: Compound 15 (4.438 g,
17.7 mmol) was reacted with oxalyl chloride (6.757 g, 53.2 mmol)
and diazald (15.205 g, 71 mmol) according to the same procedure
described for the synthesis of 7-azido-1-bromoheptan-2-one. Purifi-
cation by column chromatography (hexane/EtOAc, 9:1!1:1) af-
forded the target a-bromoketone (5.749 g, 99%): 1H NMR
(400 MHz, CDCl3): d=7.36 (m, 5H), 5.11 (s, 2H), 3.87 (s, 2H), 2.64 (t,
J=7.6 Hz, 2H), 2.36 (t, J=7.6 Hz, 2H), 1.61 (m, 4H), 1.33 ppm (m,
2H); 13C NMR (100 MHz, CDCl3): d=202.2, 173.6, 136.2, 128.8,
128.4, 66.4, 39.7, 34.5, 34.2, 28.6, 24.8, 23.6 ppm; HRMS (FAB) m/z
[M+H]+ calcd for C15H19BrO3: 327.0590, found 327.0579.
J=8.0 Hz, 2H), 7.20 (d, J=8.4 Hz, 2H), 7.13 (t, J=6.0 Hz, 1H), 3.70
(m, 2H), 2.67 (t, J=6.0 Hz, 2H), 2.60 (t, J=8.0 Hz, 2H), 1.58 (m, 2H),
1.30 (m, 4H), 0.87 ppm (t, J=6.8 Hz, 3H); 13C NMR (100 MHz,
CDCl3): d=177.0, 168.4, 147.4, 131.3, 128.8, 127.2, 35.9, 35.5, 34.0,
31.6, 31.0, 22.6, 14.2 ppm; IR (neat): n˜ =3342, 2952, 2925, 2852,
1698, 1636, 1539, 1509, 1454, 1431, 1294, 1225, 1076, 925, 853,
648, 626 cmꢀ1; UV/Vis (CH2Cl2): lmax (e)=235 nm; HRMS (FAB) m/z
[M+H]+ calcd for C15H21NO3: 264.1594, found 264.1586.
N-(5-(2-Amino-1H-imidazol-5-yl)pentyl)-4-pentylbenzamide (20):
A vial (23ꢂ85 mm) was charged with 13 (0.2 g, 0.4 mmol) and an-
hydrous THF (4 mL), and the solution was treated with Pd/C
(0.043 g, 0.04 mmol). The resulting solution was first flushed with
H2 for 5 min, and then stirred under 1 atm H2 for 12 h. The mixture
was filtered through Celite, and the solvent was evaporated in va-
cuo. The crude primary amine was redissolved in anhydrous CH2Cl2
(2 mL) and cooled to 08C. Et3N (0.047 g, 0.46 mmol) and 4-pentyl-
benzoyl chloride 18 (0.054 g, 0.25 mmol) were added, and the so-
lution was stirred for 12 h while warming from 08C to RT. Then,
the reaction was treated with trifluoroacetic acid (TFA; 0.5 mL,
6.53 mmol) and stirred at RT for 12 h. The solvent was removed in
tert-Butyl 2-amino-5-(6-(benzyloxy)-6-oxohexyl)-1H-imidazole-1-
carboxylate: Benzyl 8-bromo-7-oxooctanoate (5.749 g, 17.6 mmol)
was reacted with Boc-guanidine (8.416 g, 52.9 mmol) according to
the same procedure described for the synthesis of tert-butyl 2-
amino-5-(5-azidopentyl)-1H-imidazole-1-carboxylate. Purification by
column chromatography (hexane/EtOAc, 4:1!1:1) afforded the
target Boc-2-AI as a yellow oil (2.459 g, 36%): 1H NMR (400 MHz,
CDCl3): d=7.35 (m, 5H), 6.49 (s, 1H), 5.57 (s, 2H), 5.11 (s, 2H), 2.36
(m, 4H), 1.67 (m, 2H), 1.58 (m, 11H), 1.37 ppm (m, 2H); 13C NMR
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