FEATURE ARTICLE
Synthesis of dG–Arylamine Adducts
3913
H3¢), 3.66–3.75 (m, 4 H, H2¢a, H4¢, H5¢a, H5¢b), 3.06–3.17 (m, 1 H,
H2¢b), 2.19 (s, 3 H, H15), 0.86 [s, 9 H, SiC(CH3)3], 0.80 [s, 9 H,
SiC(CH3)3], 0.07 [m, 6 H, Si(CH3)2], –0.04 [s, 6 H, Si(CH3)2].
13C NMR (101 MHz, DMSO-d6): d = 170.2, 156.2, 153.5, 141.6,
129.1, 128.6, 128.3, 122.9, 118.9, 118.7, 115.1, 87.3, 83.2, 72.2,
63.8, 25.6, 25.5, 22.4, 17.8, 17.5, –5.4, –5.5.
H3¢), 3.80–3.83 (m, 1 H, H4¢), 3.53–3.67 (m, 2 H, H5¢a, H5¢b),
3.06–3.12 (m, 2 H, H2¢a, H2¢b), 2.02 (s, 3 H, H15).
13C NMR (101 MHz, DMSO-d6): d = 128.9, 126.1, 125.0, 87.9,
83.6, 71.3, 62.3, 45.5, 22.3.
HRMS-FAB: m/z [M]+ calcd for C18H20N6O5: 400.1589; found:
401.1621 [M + H]+.
HRMS-FAB: m/z [M]+ calcd for C30H48N6O5Si2: 628.3225; found:
629.3303 [M + H]+.
8-[Acetyl(phenyl)amino]-2¢-deoxy-N2-[(dimethylamino)methyl-
ene]guanosine
8-[Acetyl(3,5-dimethylphenyl)amino]-3¢,5¢-bis-O-(tert-butyl-
dimethylsilyl)-2¢-deoxyguanosine (11b)
Following general procedure 3, 8 (4.00 g, 6.53 mmol) and 10b
(2.33 g, 13.1 mmol) gave the product as a slightly brown solid;
yield: 2.89 g (67%); mp >200 °C (dec.).
In a dried flask, 8-[acetyl(phenyl)amino]-2¢-deoxyguanosine (75
mg, 0.18 mmol) was diluted in anhyd pyridine (4 mL) and N,N-di-
methylformamide diethyl acetal (0.40 mL, 2.30 mmol) were added.
After stirring the mixture at r.t. for 17 h, the solvent was removed in
vacuo and the product was isolated by column chromatography
(CH2Cl2–MeOH, 0–20%) as a yellow solid; yield: 65 mg (80%); mp
153–155 °C.
[a]54620 –3.3 (c 0.5, CHCl3).
IR (KBr): 3337, 3162, 2954, 2929, 2857, 1699, 1628, 1596, 1542,
1472, 1434, 1368, 1314, 1257, 1110, 1082, 1032, 1006, 941, 837,
779, 714, 675 cm–1.
1H NMR (400 MHz, DMSO-d6): d = 10.83 (s, 1 H, NH), 6.94 (s, 3
H, H2, H4, H6), 6.37 (s, 2 H, NH2), 5.99 (s, 1 H, H1¢), 4.54 (s, 1 H,
H3¢), 3.60–3.76 (m, 5 H, H4¢, H5¢a, H5¢b, H2¢a, H2¢b), 2.25 (s, 6 H,
2 Me), 2.00 (s, 3 H, Ac-Me), 0.87 [s, 9 H, SiC(CH3)3], 0.81 [s, 9 H,
SiC(CH3)3], 0.09 [s, 6 H, Si(CH3)2], –0.03 [s, 6 H, Si(CH3)2].
[a]54620 +59 (c 0.29, CH2Cl2–MeOH, 1:1).
IR (KBr): 2931, 1734, 1653, 1594, 1569, 1491, 1436, 1357, 1286,
1055, 844 cm–1.
1H NMR (500 MHz, DMSO-d6): d = 11.48 (s, 1 H, H1), 8.47 (s, 1
H, H16), 7.33–7.45 (m, 5 H, H11, H12, H13), 6.11–6.15 (m, 1 H,
H1¢), 5.30–5.33 (m, 1 H, H3¢), 4.87–4.90 (m, 1 H, H5¢a), 4.42–4.47
(m, 1 H, H5¢b), 3.80–3.86 (m, 1 H, H4¢), 3.52–3.65 (m, 2 H, H2¢a,
H2¢b), 3.13 (s, 3 H, H17a), 3.03 (s, 3 H, H17b), 2.03 (s, 3 H, H15).
13C NMR (101 MHz, DMSO-d6): d = 158.4, 129.0, 126.7, 87.8,
83.9, 70.8, 61.4, 40.7, 34.5, 22.1.
13C NMR (101 MHz, DMSO-d6): d = 156.2, 140.6, 138.4, 115.0,
87.6, 87.3, 83.4, 72.5, 63.1, 25.7, 22.5, 21.0, 17.8, –5.5, –5.6.
HRMS-FAB: m/z [M]+ calcd for C32H52N6O5Si2: 656.3538; found:
657.3612 [M + H]+.
HRMS-FAB: m/z [M]+ calcd for C21H25N7O5: 455.1917; found:
456.1977 [M + H]+.
8-[Acetyl(9H-fluoren-2-yl)amino]-3¢,5¢-bis-O-(tert-butyldi-
methylsilyl)-2¢-deoxyguanosine (11c)
Following general procedure 3, 8 (25.61 mg, 41.82 mmol) and 10c
(20 mg, 83.65 mmol) gave the product as a slightly brown solid;
yield: 26.6 mg (89%); mp 154.6 °C.
8-[Acetyl(phenyl)amino]-2¢-deoxy-5¢-O-(4,4¢-dimethoxytrityl)-
N2-[(dimethylamino)methylene]guanosine
In a dried flask, 8-[acetyl(phenyl)amino]-2¢-deoxy-N2-[(dimethyl-
amino)methylene]guanosine (45 mg, 98 mmol) were diluted in an-
hyd pyridine (4 mL) and DMTrCl (72 mg, 0.21 mmol) were added.
The mixture was stirred at r.t. for 16 h. CH2Cl2 and sat. NaHCO3
soln were added and the aqueous layer extracted with CH2Cl2 (3 ×)
The combined organic layers were dried (Na2SO4) and the solvent
removed in vacuo. The product was isolated by column chromatog-
raphy (CH2Cl2–MeOH, 0–20%) as a slightly brown solid; yield: 60
mg (80%); mp 174–176 °C.
[a]54620 –7.2 (c 0.5, CHCl3).
IR (KBr): 3385, 3214, 2954, 2929, 2857, 1685, 1592, 1535, 1471,
1405, 1362, 1256, 1176, 1112, 1029, 1006, 939, 837, 814, 779, 734,
671 cm–1.
1H NMR (400 MHz, DMSO-d6): d = 11.25 (s, 1 H, NH), 7.84–7.92
(m, 3 H, H2, H9, H12), 7.63–7.65 (m, 1 H, H13), 7.56–7.58 (m, 1
H, H6), 7.35–7.39 (m, 1 H, H8), 7.27–7.32 (m, 1 H, H7), 6.76 (s, 2
H, NH2), 6.10 (dd, J = 6.1, 7.6 Hz, 1 H, H1¢), 4.48 (q, J = 2.9, 2.9,
5.5 Hz, 1 H, H3¢), 3.92 (s, 2 H, CH2), 3.79–3.82 (m, 1 H, H4¢), 3.60–
3.72 (m, 2 H, H5¢a, H5¢b), 2.61–2.67 (m, 1 H, H2¢a), 2.20–2.23 (m,
1 H, H2¢b), 2.04 (s, 3 H, Ac-Me), 0.89 [s, 9 H, SiC(CH3)3], 0.87 [s,
9 H, SiC(CH3)3], 0.10 [s, 6 H, Si(CH3)2], 0.04 [s, 6 H, Si(CH3)2].
[a]54620 +44 (c 0.5, CHCl3).
IR (KBr): 2931, 1734, 1653, 1594, 1569, 1491, 1436, 1357, 1286,
1055, 844 cm–1.
1H NMR (400 MHz, DMSO-d6): d = 11.48 (s, 1 H, H1), 8.19 (s, 1
H, H16), 7.11–7.41 (m, 14 H, H11, H12, H13, arom. H/DMTr),
6.67–6.74 (m, 4 H, H11, H12, H13, arom. H/DMTr), 6.17–6.23 (m,
1 H, H1¢), 5.31–5.39 (m, 1 H, H3¢), 4.58–4.62 (m, 1 H, H4¢), 3.89–
3.94 (m, 1 H, H5¢a), 3.68–3.70 (m, 7 H, OCH3-DMTr, H5¢b), 3.33–
3.34 (m, 1 H, H2¢a), 3.00 (s, 3 H, H17a), 2.94 (s, 3 H, H17b), 2.49–
2.50 (m, 1 H, H2¢b), 2.04 (s, 3 H, H15).
13C NMR (101 MHz, DMSO-d6): d = 156.6, 140.6, 127.5, 125.5,
87.7, 72.7, 36.8, 26.1.
HRMS-FAB: m/z [M]+ calcd for C37H52N6O5Si2: 628.3225; found:
629.3303 [M + H]+.
13C NMR (101 MHz, DMSO-d6): d = 156.9, 129.4, 128.9, 127.2,
8-[Acetyl(phenyl)amino]-2¢-deoxyguanosine
126.6, 112.6, 112.4, 85.5, 82.9, 70.5, 54.6, 40.6, 34.4, 22.4.
In a flask, 11a (140 mg, 222 mmol) was dissolved in CH2Cl2–THF
(1:1; 12 mL). After the addition of Et3N (0.30 mL, 0.22 g,
2.2 mmol) and Et3N·3HF (0.90 mL, (5.5 mmol), the mixture was
stirred at r.t. for 16 h. It was then evaporated to dryness and the
product was isolated by column chromatography (CH2Cl2–MeOH,
0–50%) as a yellow solid; yield: 85 mg (96%); mp 138–140 °C.
HRMS-FAB: m/z [M]+ calcd for C42H43N7O7: 757.3224; found:
758.3336 [M + H]+.
8-[Acetyl(phenyl)amino]-3¢-O-[(2-cyanoethyl)(diisopropylami-
no)phosphino]-2¢-deoxy-5¢-O-(4,4¢-dimethoxytrityl)-N2-[(di-
methylamino)methylene]guanosine (12a)
In a dried flask, 8-[acetyl(phenyl)amino]-2¢-deoxy-5¢-O-(4,4¢-
dimethoxytrityl)-N2-[(dimethylamino)methylene]guanosine
(39 mg, 51 mmol) were diluted in anhyd CH2Cl2–anhyd MeCN (1:1,
6 mL) and 0.25 M DCI activator soln in THF (0.6 mL) and (2-cya-
noethyl)bis(diisopropylamino)phosphine (0.10 mL, 0.32 mmol)
[a]54620 +55 (c 0.29, CH2Cl2–MeOH, 1:1).
IR (KBr): 2937, 1718, 1680, 1671, 1647, 1576, 1369, 842 cm–1.
1H NMR (400 MHz, DMSO-d6): d = 10.83 (s, 1 H, H1), 7.35–7.50
(m, 5 H, H11, H12, H13), 6.44 (br s, 2 H, NH2), 6.04–6.10 (m, 1 H,
H1¢), 5.24 (br s, 1 H, OH), 4.96 (br s, 1 H, OH), 4.35–4.40 (m, 1 H,
Synthesis 2007, No. 24, 3907–3914 © Thieme Stuttgart · New York