Journal of the American Chemical Society
Article
(12) Abou-Sleiman, P. M.; Muqit, M. M. K.; Wood, N. W. Nat. Rev.
Neurosci. 2006, 7, 207.
(13) Schapira, A. H. V. Lancet Neurol. 2008, 7, 97.
(14) Guzman, J. N.; Sanchez-Padilla, J.; Wokosin, D.; Kondapalli, J.;
Ilijic, E.; Schumacker, P. T.; Surmeier, D. J. Nature 2010, 468, 696.
(15) Mattson, M. P.; Magnus, T. Nat. Rev. Neurosci. 2006, 7, 278.
(16) Manfredi, G.; Xu, Z. Mitochondrion 2005, 5, 77.
CTCF = IntDensity − (Cell Area × BkgFluorescence)
where IntDensity is the integrated intensity of the pixels for one cell,
Cell Area is the number of pixels in the same cell, and
BkgFluorescence is the average signal per pixel for a region with no
cells.
Calculations for Manders’ Colocalization Coefficients. The
Manders’ colocalization coefficients M1 and M2 were calculated
according to Manders method,55 using the JACoP plug-in in ImageJ
software. The colocalization coefficients M1 and M2 are defined by the
following equations:
̀
(17) Girard, M.; Lariviere, R.; Parfitt, D. A.; Deane, E. C.; Gaudet, R.;
Nossova, N.; Blondeau, F.; Prenosil, G.; Vermeulen, E. G. M.; Duchen,
M. R.; Richter, A.; Shoubridge, E. A.; Gehring, K.; McKinney, R. A.;
Brais, B.; Chapple, J. P.; McPherson, P. S. Proc. Natl. Acad. Sci. U.S.A.
2012, 109, 1661.
∑i Ri,coloc
∑i Ri
∑i Gi,coloc
∑i Gi
M1 =
and M2 =
(18) Dickinson, B. C.; Chang, C. J. J. Am. Chem. Soc. 2008, 130,
9638.
(19) Dickinson, B. C.; Srikun, D.; Chang, C. J. Curr. Opin. Chem. Biol.
2010, 14, 50.
(20) Robinson, K. M.; Janes, M. S.; Pehar, M.; Monette, J. S.; Ross,
M. F.; Hagen, T. M.; Murphy, M. P.; Beckman, J. S. Proc. Natl. Acad.
Sci. U.S.A. 2006, 103, 15038.
i.e., M1 is the sum of the intensities of red pixels that have a green
component divided by the total sum of red intensities and M2 is the
sum of the intensities of green pixels that have a red component
divided by the total sum of green intensities. M1 and M2
colocalization coefficients can be determined even when the signal
intensities in the two components differ strongly as is the case with
Mito-Bodipy-TOH and MitoTracker Deep Red. The intensity
thresholds for each channel were determined using the Costes
method.66
(21) Koide, Y.; Urano, Y.; Kenmoku, S.; Kojima, H.; Nagano, T. J.
Am. Chem. Soc. 2007, 129, 10324.
(22) Liu, F.; Wu, T.; Cao, J.; Zhang, H.; Hu, M.; Sun, S.; Song, F.;
Fan, J.; Wang, J.; Peng, X. Analyst 2013, 138, 775.
(23) Prime, T. A.; Forkink, M.; Logan, A.; Finichiu, P. G.;
McLachlan, J.; Li Pun, P. B.; Koopman, W. J. H.; Larsen, L.; Latter,
M. J.; Smith, R. A. J.; Murphy, M. P. Free Radical Biol. Med. 2012, 53,
544.
(24) Naguib, Y. M. A. Anal. Biochem. 1998, 265, 290.
(25) Krumova, K.; Oleynik, P.; Karam, P.; Cosa, G. J. Org. Chem.
2009, 74, 3641.
ASSOCIATED CONTENT
■
S
* Supporting Information
Kinetic studies in homogeneous and microheterogeneous
1
media, synthesis, IR, H NMR and 13C NMR spectra for all
new compounds and precursors. This material is available free
(26) Oleynik, P.; Ishihara, Y.; Cosa, G. J. Am. Chem. Soc. 2007, 129,
1842.
AUTHOR INFORMATION
(27) Khatchadourian, A.; Krumova, K.; Boridy, S.; Ngo, A. T.;
Maysinger, D.; Cosa, G. Biochemistry 2009, 48, 5658.
(28) Krumova, K.; Friedland, S.; Cosa, G. J. Am. Chem. Soc. 2013,
135, 1625.
(29) Krumova, K.; Freidland, S.; Cosa, G. J. Am. Chem. Soc. 2012,
134, 10102.
■
Corresponding Author
Notes
The authors declare no competing financial interest.
(30) Krumova, K.; Cosa, G. J. Am. Chem. Soc. 2010, 132, 17560.
(31) Liberman, E. A.; Topaly, V. P.; Tsofina, L. M.; Jasaitis, A. A.;
Skulachev, V. P. Nature 1969, 222, 1076.
(32) Chen, L. B. Annu. Rev. Cell Biol. 1988, 4, 155.
(33) Grinius, L. L.; Jasaitis, A. A.; Kadziauskas, Y. P.; Liberman, E. A.;
Skulachev, V. P.; Topali, V. P.; Tsofina, L. M.; Vladimirova, M. A.
Biochim. Biophys. Acta 1970, 216, 1.
(34) Murphy, M. P. Trends Biotechnol. 1997, 15, 326.
(35) Murphy, M. P. Expert Opin. Biol. Ther. 2001, 1, 753.
(36) Murphy, M. P.; Smith, R. A. J. Annu. Rev. Pharmacol. Toxicol.
2007, 47, 629.
ACKNOWLEDGMENTS
■
G.C. is grateful to the Natural Sciences and Engineering
Research Council (NSERC) and Canadian Foundation for
Innovation (CFI) for funding. K.K. is thankful to the Drug
Discovery and Training Program (CIHR) for postgraduate
scholarships; L.E.G. is thankful to Vanier Canada for a
postgraduate scholarship. We are also grateful to Prof. Siegfried
Hekimi and Ms. Ying Cheng at McGill Biology for the use of
their facilities. Imaging and image processing/analysis for this
manuscript were performed in the McGill University Life
Sciences Complex Imaging Facility.
(37) Smith, R. A. J.; Porteous, C. M.; Coulter, C. V.; Murphy, M. P.
Eur. J. Biochem. 1999, 263, 709.
(38) Abu-Gosh, S. E.; Kolvazon, N.; Tirosh, B.; Ringel, I.; Yavin, E.
Mol. Pharmaceutics 2009, 6, 1138.
(39) Biasutto, L.; Mattarei, A.; Marotta, E.; Bradaschia, A.; Sassi, N.;
Garbisa, S.; Zoratti, M.; Paradisi, C. Bioorg. Med. Chem. Lett. 2008, 18,
5594.
(40) Mukhopadhyay, A.; Weiner, H. Adv. Drug Delivery Rev. 2007,
59, 729.
(41) Dodani, S. C.; Leary, S. C.; Cobine, P. A.; Winge, D. R.; Chang,
C. J. J. Am. Chem. Soc. 2011, 133, 8606.
(42) Hoye, A. T. D.; Jennifer, E.; Wipf, P.; Fink, M. P.; Kagan, V. E.
REFERENCES
■
(1) Barnham, K. J.; Masters, C. L.; Bush, A. I. Nat. Rev. Drug
Discov.ery 2004, 3, 205.
(2) Burton, G. W.; Ingold, K. U. Acc. Chem. Res. 1986, 19, 194.
(3) Porter, N. A. Acc. Chem. Res. 1986, 19, 262.
(4) Yin, H.; Xu, L.; Porter, N. A. Chem. Rev. 2011, 111, 5944.
(5) α-Tocopherol effectively scavenges peroxyl radicals preventing
chain reactions from taking place. In its presence the kinetic chain
length is 1 unless the lipids to antioxidant mole ratio is larger than 1 ×
105.
Acc. Chem. Res. 2008, 41, 87.
(43) Bae, S. K.; Heo, C. H.; Choi, D. J.; Sen, D.; Joe, E.-H.; Cho, B.
R.; Kim, H. M. J. Am. Chem. Soc. 2013, 135, 9915.
(44) Yang, Z.; He, Y.; Lee, J.-H.; Park, N.; Suh, M.; Chae, W.-S.; Cao,
J.; Peng, X.; Jung, H.; Kang, C.; Kim, J. S. J. Am. Chem. Soc. 2013, 135,
9181.
(6) Finkel, T.; Holbrook, N. J. Nature 2000, 408, 239.
(7) Turrens, J. F. J. Physiol. 2003, 552, 335.
(8) Murphy, M. P. Biochem. J. 2009, 417, 1.
(9) Green, D. R.; Kroemer, G. Science 2004, 305, 626.
(10) Beal, M. F. Ann. Neurol. 2005, 58, 495.
(11) Green, D. R.; Reed, J. C. Science 1998, 281, 1309.
(45) Loudet, A.; Burgess, K. Chem. Rev. 2007, 107, 4891.
17142
dx.doi.org/10.1021/ja408227f | J. Am. Chem. Soc. 2013, 135, 17135−17143