Total Synthesis of a Mycobactin S
J. Am. Chem. Soc., Vol. 119, No. 15, 1997 3467
136.28, 128.43, 128.07, 128.02, 82.13, 66.77, 58.51, 54.05, 32.48, 27.92,
26.85, 22.37, 20.36, 19.90; HRFABMS m/z calcd for C21H33N2O5
393.2389, found 393.2400.
(m, 1H), 4.24-4.14 (m, 1H), 3.86-3.69 (m, 2H), 2.45 (dd, J1 ) 15.3
Hz, J2 ) 3.0 Hz, 1H), 2.32 (dd, J1 ) 15.3 Hz, J2 ) 8.6 Hz, 1H), 2.08-
1.42 (m, 6H), 1.23 (d, J ) 6.3 Hz, 3H); 13C NMR (75 MHz, CDCl3)
δ 171.61, 167.06, 64.80, 50.84, 50.31, 43.78, 31.12, 27.72, 25.70, 22.61;
HRFABMS m/z calcd for C10H19N2O4 231.1345, found 231.1329.
TBDPS-Protected Azopine Derivative 37. To a stirred solution
of nitrone 32 (481 mg, 1.23 mmol) in MeOH (5 mL) was added NH2-
OH‚HCl (423 mg, 6.14 mmol, 5 equiv). The solution was stirred at
40 °C for 10 min. After removal of the solvent, the residue was taken
up in saturated NaHCO3 (10 mL). The aqueous solution was extracted
with CH2Cl2. The combined organic layers were dried over Na2SO4,
filtered, and concentrated to afford hydroxylamine 33. Hydroxylamine
33 was then treated with TFA/CH2Cl2 (3 mL/3 mL) for 1.5 h at room
temperature and concentrated to give acid 34. To a refluxing solution
of DCC (1.26 g, 6.14 mmol, 5 equiv), DMAP (749 mg, 6.14 mmol, 5
equiv), and DMAP‚HCl (976 mg, 6.14 mmol, 5 equiv) in CHCl3 (70
mL) was added acid 34 in CHCl3 (70 mL) dropwise over 2 h. The
reaction was refluxed for 1 h after addition. The mixture was
concentrated, taken up in DMF (5 mL), and treated with TBDPSCl
(800 µL, 3.08 mmol, 2.5 equiv) and imidazole (418 mg, 6.14 mmol, 5
equiv). After being stirred at 35 °C under argon overnight, the reaction
was diluted with EtOAc. The EtOAc solution was washed with H2O
and brine, dried over Na2SO4, filtered, concentrated, and chromato-
graphed on silica gel eluting with EtOAc/Skelly B (1/5) to give azopine
37 (339 mg, 54%) as a clear oil: Rf ) 0.19 (EtOAc/Skelly B ) 1/5);
Nr-Cbz-NE-palmitoyl-NE-[[2-(trimethylsilyl)ethoxy]methoxy]-L-
lysine Methyl Ester (41). To a stirred solution of NR-Cbz-Nꢀ-hydroxy-
Nꢀ-palmitoyl-L-lysine methyl ester (28) (3.65 g, 6.67 mmol) in toluene
(100 mL) were added N,N-diisopropylethylamine (23.2 mL, 133 mmol,
20 equiv), DMAP (catalytic amount), and SEMCl (11.8 mL, 66.7 mmol,
10 equiv) under argon. After being stirred for 48 h at 60-70 °C, the
reaction mixture was concentrated and then dissolved in EtOAc (200
mL). The solid in EtOAc was filtered off, and then the organic layer
was washed with H2O and brine, dried over Na2SO4, filtered,
concentrated, and chromatographed on silica gel eluting with EtOAc/
CH2Cl2 (1/15) to give product 41 (4.31 g, 91%) as a clear oil: Rf )
0.19 (EtOAc/CH2Cl2 ) 1/15); IR (neat) 3310 (w), 1720, 1650 cm-1
;
1H NMR (300 MHz, CDCl3) δ 7.36-7.31 (m, 5H), 5.36 (d, J ) 7.8
Hz, 1H), 5.10 (s, 2H), 4.90 (s, 2H), 4.37-4.30 (m, 1H), 3.76-3.62
(m, 7H), 2.38 (t, J ) 7.6 Hz, 2H), 1.86-1.03 (m, 32H), 0.99-0.93
(m, 2H), 0.88 (t, J ) 6.7 Hz, 3H), 0.03 (s, 9H); 13C NMR (75 MHz,
CDCl3) δ 175.36, 172.69, 155.82, 136.18, 128.29, 127.89, 127.85,
99.08, 67.38, 66.68, 53.64, 52.09, 47.16, 32.43, 31.75, 29.52, 29.49,
29.38, 29.30, 29.27, 29.19, 26.10, 24.33, 22.52, 22.14, 18.02, 13.96,
-1.63; HRFABMS m/z calcd for C37H67N2O7Si 679.4718, found
679.4702.
1
IR (neat) 3410, 3330, 1720, 1675 cm-1; H NMR (300 MHz, CDCl3)
δ 7.75-7.71 (m, 4H), 7.45-7.33 (m, 11H), 6.03 (d, J ) 6.3 Hz, 1H),
5.05 (ab q, J1 )17.9 Hz, J2 )12.4 Hz, 2H), 4.05-3.99 (m, 2H), 3.52-
3.45 (m, 2H), 1.89-1.05 (m, 15H); 13C NMR (75 MHz, CDCl3) δ
169.49, 155.26, 136.50, 136.09, 135.99, 132.04, 131.57, 130.19, 130.14,
128.36, 127.90, 127.76, 127.49, 127.44, 66.46, 54.17, 53.06, 31.54,
27.30, 26.85, 25.25, 19.48; HRFABMS m/z calcd for C30H37N2O4Si
517.2523, found 517.2568.
Mycobactic Acid Methyl Ester Analog 42a. Protected hydroxamic
acid 41 (200 mg, 0.295 mmol) was stirred in MeOH (5 mL) in the
presence of Pd/C (10%, 20 mg) under H2 (1 atm) for 1 h. After
filtration, the solvent was removed in Vacuo to provide the correspond-
ing free amine. The free amine was then treated with acid 24 [derived
from ester 22 (137 mg) by hydrogenolysis] and EDC (85 mg, 0.442
mmol, 1.5 equiv) in CH2Cl2 (5 mL). After being stirred for 30 min,
the reaction mixture was concentrated and chromatographed on silica
gel eluting with EtOAc/CH2Cl2 (1/15) to afford compound 42a (140
mg, 65%) as a clear oil: Rf ) 0.19 (EtOAc/CH2Cl2 ) 1/15); IR (neat)
1740, 1650 (br), 1630 cm-1; 1H NMR (300 MHz, CDCl3) δ 7.67 (dd,
J1 ) 7.9 Hz, J2 ) 1.7 Hz, 1H), 7.39 (ddd, J1 ) 8.7 Hz, J2 ) 7.5, J3 )
1.7 Hz, 1H), 7.00 (dd, J1 ) 8.5 Hz, J2 ) 0.8 Hz, 1H), 6.93-6.85 (m,
1H), 4.94 (t, J ) 9.6 Hz, 1H), 4.84 (s, 2H), 4.65-4.61 (m, 2H), 4.57-
4.50 (m, 1H), 3.73 (s, 3H), 3.72-3.66 (m, 2H), 3.60 (t, J ) 7.1 Hz,
2H), 2.33 (d, J ) 7.6 Hz, 2H), 1.91-1.52 (m, 6H), 1.28-1.16 (m,
26H), 0.95-0.89 (m, 2H), 0.83 (t, J ) 6.8 Hz, 3H), -0.003 (s, 9H);
13C NMR (75 MHz, CDCl3) δ 175.45, 172.09, 170.27, 167.68, 159.72,
134.13, 128.47, 118.95, 116.88, 109.94, 99.13, 69.40, 67.97, 67.47,
52.37, 52.04, 47.29, 32.50, 31.82, 31.58, 29.59, 29.56, 29.44, 29.37,
29.26, 26.18, 24.42, 22.59, 22.35, 18.08, 14.02, -1.56; HRFABMS
m/z calcd for C39H68N3O8Si 734.4776, found 734.4764.
TBDMS-Protected Azopine Derivative 36. Compound 36 was
prepared in 54% yield as a clear oil using the procedure described for
the synthesis of 37: Rf ) 0.44 (EtOAc/CH2Cl2 ) 1/15); IR (neat) 1720,
1
1675 cm-1; H NMR (300 MHz, CDCl3) δ 7.44-7.28 (m, 5H), 6.11
(d, J ) 6.5 Hz, 1H), 5.10 (s, 2H), 4.34 (ddd, J1 ) 11.3 Hz, J2 ) 6.6
Hz, J3 ) 1.9 Hz, 1H), 3.83-3.74 (m, 1H), 3.59-3.52 (m, 1H), 2.07-
1.46 (m, 6H), 0.96 (s, 9H), 0.22 (s, 3H), 0.15 (m, 3H); 13C NMR (75
MHz, CDCl3) δ 170.18, 155.43, 136.50, 128.47, 128.01, 127.90, 66.66,
54.36, 53.23, 31.90, 27.58, 25.73, 25.64, 18.04, -4.66, -5.24;
HRFABMS m/z calcd for C20H33N2O4Si 393.2210, found 393.2223.
TBDPS-Protected Cobactin 40a. To a stirred solution of compound
37 (103 mg, 0.199 mmol) in MeOH (4 mL) was added Pd/C (10 mg,
10%). After being stirred for 2 h at room temperature under H2 (1
atm), the reaction mixture was filtered and concentrated to give the
corresponding amine. To a beaker with Dowex 50 × 8-200 resin in
MeOH was added sodium (R)-â-hydroxybutyrate (38; Aldrich, 25 mg).
Acid 39 was obtained after filtration and concentration. To the mixture
of the amine, DCC (103 mg, 0.498 mmol, 2.5 equiv), DMAP (61 mg,
0.498 mmol, 2.5 equiv), and DMAP‚HCl (79 mg, 0.498 mmol, 2.5
equiv) in CHCl3 (10 mL) at 40 °C was added acid 39 in CHCl3 (2 mL)
slowly over 10 min. After being stirred further for 20 min at 40 °C,
the reaction mixture was concentrated and then taken up in EtOAc.
The EtOAc solution was washed with H2O and brine, dried over Na2-
SO4, filtered, concentrated, and chromatographed on silica gel eluting
with EtOAc to give TBDPS-protected cobactin 40a (58 mg 63%) as a
clear oil: Rf ) 0.32 (EtOAc); IR (neat) 3360 (br), 1645 (br) cm-1; 1H
NMR (300 MHz, CDCl3) δ 7.74 (t, J ) 7 Hz, 4H), 7.47-7.35 (m,
6H), 6.78 (d, J ) 6 Hz, 1H), 4.22 (dd, J1 ) 10 Hz, J2 ) 6 Hz, 1H),
4.20-4.10 (m, 1H), 3.90 (br, 1H), 3.56-3.40 (m, 2H), 2.32 (dd, J1 )
15 Hz, J2 ) 3 Hz, 1H), 2.21 (dd, J1 ) 15 Hz, J2 ) 8 Hz, 1H), 1.86-
1.35 (m, 9H), 1.15 (s, 9H); 13C NMR (75 MHz, CDCl3) δ 171.37,
169.29, 136.08, 135.94, 131.94, 131.49, 130.25, 130.21, 127.54, 127.47,
64.69, 54.18, 51.42, 43.48, 30.92, 27.26, 26.84, 25.25, 22.46, 19.50;
HRFABMS m/z calcd for C26H37N2O4Si 469.2523, found 469.2519.
Cobactin T (40b). To a stirred mixture of Dowex resin (50 ×
8-200) in MeOH (1 mL) was added compound 40a (54 mg). After
being stirred for 1 h at room temperature, the reaction mixture was
filtered and concentrated to give a white solid. The solid was
recrystallized from EtOAc/hexanes to give colorless crystals (17 mg,
62%): Rf ) 0.50 (EtOAc/MeOH ) 8/3); mp 137-138 °C; IR (KBr)
1630 cm-1; 1H NMR (300 MHz, CDCl3) δ 6.97 (br, 1H), 4.64-4.58
Protected Mycobactin 43. To a stirred solution of protected
mycobactic acid 42b (obtained from 42a by saponification with LiOH;
72 mg, 0.1 mmol), protected cobactin 40a (48 mg, 0.1 mmol, 1 equiv),
and PPh3 (131 mg, 0.5 mmol, 5 equiv) in freshly distilled THF (4 mL)
was added DEAD (79 µL, 0.5 mmol, 5 equiv)/THF (0.5 mL). After
being stirred for 1 h at room temperature, the reaction was concentrated.
The residue was recrystallized from EtOAc/Skelly B to remove reduced
DEAD and triphenylphosphine oxide. The mother liquor was concen-
trated and chromatographed on silica gel eluting with EtOAc/CH2Cl2
(1/5) to afford protected mycobactin S 43 (57 mg, 49%) as a clear oil:
Rf ) 0.71 (EtOAc/CH2Cl2 ) 1/1); IR (neat) 3320, 1740, 1650 (br),
1
1640 cm-1; H NMR (500 MHz, CDCl3) δ 11.44 (s, 1H), 7.74-7.68
(m, 5H), 7.46-7.35 (m, 7H), 7.02 (dd, J1 ) 8.3 Hz, J2 ) 1.0 Hz, 1H),
6.98 (d, J ) 7.8 Hz, 1H), 6.91-6.87 (m, 2H), 5.26-5.23 (m, 1H),
4.95 (t, J ) 10 Hz, 1H), 4.86 (s, 2H), 4.63 (d, J ) 9.3 Hz, 2H), 4.45-
4.41 (m, 1H), 4.23-4.18 (m, 1H), 3.73-3.69 (m, 2H), 3.64-3.57 (m,
2H), 3.50-3.48 (m, 2H), 2.50 (dd, J1 ) 14.1 Hz, J2 ) 6.8 Hz, 1H),
2.37-2.33 (m, 3H), 1.85-1.51 (m, 12H), 1.28 (d, J ) 6.4 Hz, 3H),
1.26-1.24 (m, 26H), 1.13 (s, 9H), 0.96-0.92 (m, 2H), 0.87 (t, J )
6.8 Hz, 3H), 0.017 (s, 9H); 13C NMR (75 MHz, CDCl3) δ 170.48,
170.24, 169.31, 167.82, 167.48, 159.73, 136.04, 135.91, 134.02, 131.88,
131.49, 130.22, 130.15, 128.43, 127.45, 118.87, 116.88, 109.99, 98.99,
69.36, 69.25, 67.95, 67.50, 54.11, 52.49, 51.58, 42.27, 32.50, 31.82,
31.35, 30.84, 29.58, 29.55, 29.45, 29.39, 29.24, 27.14, 26.80, 26.23,