Journal of Medicinal Chemistry
Article
DMSO, DMF, and weakly basic aqueous solutions (5% NaHCO3 in
H2O).
H), 3.25 (td, J = 13.4, 6.6 Hz, 1 H), 3.16−3.09 (m, 2 H), 2.85−2.81
(m, 2 H), 2.71−2.47 (m, 8 H), 2.43−2.36 (m, 1 H), 1.98−1.92 (m, 1
H), 1.79 (ddd, J = 13.6, 6.7, 6.6 Hz, 1 H), 1.76−1.68 (m, 2 H), 1.68−
1.52 (m, 6 H), 1.52−1.42 (m, 2 H), 1.32−1.23 (m, 2 H). 13C NMR
(150 MHz, CD3OD) δ 175.6, 175.6, 174.9, 174.9, 174.6, 174.6, 174.1,
173.9, 171.8, 171.7, 171.6, 171.6, 166.4, 163.6, 150.6, 150.5, 150.4,
150.4, 147.5, 147.5, 147.5, 147.5, 138.3, 138.2, 130.8, 130.7, 130.6,
130.2, 130.0, 129.7, 129.5, 129.4, 129.4, 129.0, 125.6, 124.7, 119.8,
119.8, 119.7, 119.7, 119.7, 118.8, 118.7, 118.7, 118.6, 116.9, 116.9,
116.8, 116.8, 74.0, 59.9, 59.7, 59.6, 54.1, 46.9, 46.9, 44.6, 40.5, 40.2,
40.0, 38.1, 37.7, 32.5, 32.2, 32.2, 31.3, 29.8, 29.8, 29.7, 29.5, 29.5, 28.9,
28.6, 27.9, 27.8, 27.2, 27.1, 26.2, 24.8, 24.7, 23.1. HRMS-ESI (m/z):
[M + H]+ calcd for C50H62ClN8O15, 1049.4018; found, 1049.4010.
HPLC-MS retention time of 5.75 min.
Penta-O-benzyl-biscatechol−Monohydroxamate−O-PNB-Lora-
carbef Conjugate (5). The synthesis of this compound has been
reported previously by a slightly different synthetic approach.16 O-
PNB-loracarbef TFA salt (3; 208.0 mg, 0.35 mmol) was dissolved in 5
mL of anhydrous CH2Cl2, and the solution was cooled to 0 °C (ice
bath temp). An excess of iPr2EtN (0.40 mL, 2.3 mmol) was slowly
added under argon, followed directly by a catalytic amount of DMAP
(7.0 mg, 0.06 mmol), a solution of benzyl-protected siderophore 2
(450.0 mg, 0.38 mmol) in 10 mL of CH2Cl2, and EDC-HCl (136.0
mg, 0.71 mmol), respectively. The mixture was warmed to rt and
stirred overnight under dry argon. After 24 h, TLC (3% MeOH in
CH2Cl2; FeCl3 stain) showed no remaining starting material (3). The
CH2Cl2 was evaporated under reduced pressure, and the resulting oil
was partitioned between 50 mL of EtOAc and 50 mL of 1 N HCl. The
layers were separated, and the EtOAc was washed with 25 mL of H2O.
All the aqueous layers were combined and extracted with 50 mL of
EtOAc. The EtOAc layers were combined and washed with 50 mL of
brine, dried over MgSO4, gravity filtered, and concentrated under
reduced pressure. This gave 650 mg of a viscous oil that was purified
via silica gel column chromatography (1.25 in. × 4 in. silica gel; 3−5%
MeOH in EtOAc). Pure benzyl-protected mixed ligand siderophore−
loracarbef conjugate (5) was obtained in 52% yield as an off-white,
Penta-O-benzyl-biscatechol−Monohydroxamate−O-Benzyl-ci-
profloxacin Conjugate (6). O-Benzyl-ciprofloxacin hydrochloride salt
(4) was free-based using Amberlite IR400(OH−) resin in CHCl3 for 4
h. The resulting O-benzyl-ciprofloxacin amine (45.0 mg, 0.11 mmol),
penta-O-benzyl-biscatechol-monohydroxamate 2 (117.0 mg, 0.10
mmol), iPr2EtN (0.04 mL, 0.23 mmol), DMAP (3.0 mg, 0.025
mmol), and EDC-HCl (31.0 mg, 0.16 mmol) were dissolved in 5 mL
of anhydrous CH2Cl2, respectively. After 24 h at rt, TLC (6% MeOH
in CH2Cl2; FeCl3 stain) showed no remaining starting material 2. The
mixture was diluted with CH2Cl2 (35 mL), washed with H2O (30
mL), saturated aqueous NaHCO3 (30 mL), and brine (30 mL), dried
over anhydrous MgSO4, filtered, and concentrated. The crude product
was purified by silica gel column chromatography (1 in. × 5 in. silica
gel; 3−5% MeOH in CHCl3) to give the desired product (6) in 52%
1
waxy solid (302.5 mg, 0.18 mmol); mp 70−72 °C. H NMR (600
MHz, DMSO-d6) δ 9.32 (br s, 1 H), 9.11 (d, J = 8.5 Hz, 1 H), 8.88 (br
s, 1 H), 8.82 (br s, 1 H), 8.63 (d, J = 7.6 Hz, 1 H), 8.27−8.21 (m, 2
H), 7.77 (br s, 1 H), 7.69 (d, J = 8.8 Hz, 1 H), 7.51−7.03 (m, 35 H),
6.75 (d, J = 10.3 Hz, 1 H), 6.66 (s, 1 H), 5.48 (d, J = 7.6 Hz, 1 H),
5.46−5.35 (m, 5 H), 5.20−5.08 (m, 2 H), 5.07−4.98 (m, 2 H), 4.92−
4.82 (m, 2 H), 3.95−3.73 (m, 4 H), 3.59−3.47 (m, 2 H), 3.33−3.07
(m, 8 H), 2.99−2.91 (m, 2 H), 2.62 (ddd, J = 18.8, 12.1, 6.3 Hz, 4 H),
2.55−2.44 (m, 4 H), 2.34−2.23 (m, 2 H), 1.85−0.98 (m, 12 H).
HRMS-ESI (m/z): [M + Na]+ calcd for C92H96ClN9NaO17,
1656.6505; found, 1656.6538. Note: The 13C NMR spectrum in
DMSO-d6 shows rotamers resulting in a complex mixture of 13C-
signals.
1
yield as a clear wax (80.9 mg, 0.05 mmol). H NMR (600 MHz,
CDCl3) δ 8.53−8.46 (m, 1 H), 8.36−8.18 (m, 1 H), 8.09−7.85 (m, 3
H), 7.73−7.57 (m, 1 H), 7.54−7.00 (m, 32 H), 6.97−6.51 (m, 4 H),
6.41 (d, J = 4.1 Hz, 1 H), 6.31 (br s, 1 H), 5.40−5.36 (m, 2 H), 5.17−
4.96 (m, 8 H), 4.91−4.86 (m, 2 H), 3.86−3.75 (m, 2 H), 3.75−3.55
(m, 4 H), 3.51−3.35 (m, 3 H), 3.34−3.03 (m, 10 H), 2.87−2.75 (m, 2
H), 2.71 - 2.39 (m, 6 H), 2.16−1.90 (m, 2 H), 1.75−1.31 (m, 12 H),
1.13−1.00 (m, 2 H). 13C NMR (150 MHz, CDCl3) δ 173.7, 173.2,
173.0, 172.3, 172.2, 172.2, 172.0, 171.7, 171.6, 171.3, 170.4, 169.7,
165.4, 165.3, 165.2, 165.1, 165.1, 165.0, 154.1, 152.4, 151.6, 151.6,
151.6, 148.3, 147.8, 146.8, 146.7, 146.5, 144.0, 137.9, 136.5, 136.3,
136.3, 136.3, 136.3, 136.2, 129.1, 129.0, 128.8, 128.8, 128.8, 128.7,
128.7, 128.6, 128.6, 128.6, 128.6, 128.5, 128.5, 128.5, 128.4, 128.4,
128.4, 128.2, 128.2, 128.2, 128.1, 127.9, 127.9, 127.8, 127.8, 127.8,
127.6, 127.6, 127.5, 127.3, 127.3, 127.3, 127.3, 127.0, 126.0, 124.4,
124.4, 124.3, 124.2, 123.3, 123.1, 123.1, 123.0, 122.8, 117.9, 117.7,
116.8, 116.5, 115.1, 113.4, 113.2, 110.0, 105.1, 76.4, 76.4, 76.3, 76.2,
76.1, 71.2, 71.1, 71.0, 71.0, 66.3, 50.0, 49.5, 47.2, 45.1, 41.4, 39.2, 38.9,
38.7, 38.5, 37.0, 36.9, 34.5, 31.5, 28.6, 27.2, 26.6, 26.6, 26.3, 25.9, 24.9,
23.8, 22.6, 8.1. HRMS-ESI (m/z): [M + Na]+ calcd for
C93H99FN8NaO14, 1593.7157; found, 1593.7155.
Biscatechol−Monohydroxamate−Ciprofloxacin Conjugate (1c).
Penta-O-benzyl-biscatechol−monohydroxamate−O-benzyl-ciprofloxa-
cin conjugate (6; 75.0 mg, 0.05 mmol) was dissolved in 8 mL of
MeOH:EtOAc (3:1) in an HCl-washed, 10 mL round-bottom flask
sealed under argon. The flask was charged with 10% Pd−C (18.5 mg)
and exposed to a balloon of hydrogen gas (∼1 atm). Reaction progress
was monitored by RP-C18 TLC (1.5:1 CH3CN:H2O; FeCl3 stain),
and after 24 h there was no remaining starting material (6) and a new
product appeared giving a strong FeCl3 positive test was present (Rf
0.44; purple with FeCl3 stain). The flask was flushed with argon, and
the mixture was diluted with MeOH, vacuum filtered through Celite,
and concentrated under reduced pressure to give a tan film. The film
was dissolved in MeOH and the product (1c) precipitated as a faint
purple solid after addition of cold Et2O. The desired conjugate (1c)
was obtained in 51% yield as a faint purple solid (25.0 mg, 0.025
mmol); mp 131−134 °C (dec). 1H NMR (600 MHz, CD3OD) δ 8.74
(s, 1 H), 7.95 (d, J = 13.8 Hz, 1 H), 7.54 (br s, 1 H), 7.22−7.17 (m, 2
H), 6.89−6.85 (m, 2 H), 6.68−6.61 (m, 2 H), 3.83−3.77 (m, 4 H),
3.71 (br s, 1 H), 3.63−3.56 (m, 2 H), 3.48−3.32 (m, 12 H), 3.13 (t, J
= 6.9 Hz, 2 H), 2.82 (t, J = 5.7 Hz, 2 H), 2.74−2.63 (m, 4 H), 2.48 (dt,
J = 13.7, 6.8 Hz, 2 H), 1.98−1.91 (m, 2 H), 1.81 (dt, J = 14.1, 7.0 Hz,
Biscatechol−Monohydroxamate−Loracarbef Conjugate (1b).
The synthesis of this compound has been reported previously by a
slightly different synthetic approach.16 Benzyl-protected conjugate 5
(209.5 mg, 0.13 mmol) was dissolved in 2.50 mL of DMF:H2O (95/5;
v/v) in an HCl-washed round-bottom flask. Concentrated HCl (33.4
μL, 0.38 mmol) and 10% Pd−C (41.9 mg) were added, respectively,
and the flask was sealed under argon. The flask was then flushed
several times with hydrogen gas using intermediate vacuum
evacuations, and the mixture was left stirring at rt under a balloon
of hydrogen gas (∼1 atm). Reaction progress was monitored by RP-
C18 TLC (1.5:1 CH3CN:H2O; FeCl3 stain), and after 24 h there was
no remaining starting material (5) and a new product appeared giving
a strong FeCl3 positive test was present (Rf 0.78; purple with FeCl3
stain). The flask was flushed with argon, and the mixture was vacuum
filtered through glass filter paper. The DMF and H2O were removed
using high vacuum rotary evaporation (∼1 mmHg), which gave 250
mg of a viscous oil. This material was purified by size exclusion
chromatography (Sephadex LH20, 10.0 g; 10% MeOH in EtOAc).
Several fractions of varying purity (70−90% pure by analytical HPLC)
were isolated from the size exclusion column, and each fraction (Fr)
was recrystallized from MeOH/Et2O to give the desired conjugate in
68% yield as off-white solids: Fr 1 (17.5 mg), Fr 2 (44.8 mg), Fr 3
(19.5 mg), Fr 4 (10.0 mg). A portion of the largest fraction (Fr 2; 30
mg) was subjected to purification by preparative HPLC (see Materials
and Instrumentation for exact details of purification) where the desired
compound 1b elutes at 4.15 min. Pure fractions were lyophilized, and
the obtained solid was recrystallized from MeOH/Et2O to give 15 mg
of an analytically pure sample of conjugate 1b as a white-solid used for
spectral characterization and biological testing; mp 123−125 °C (color
1
change), 186−188 °C (dec). H NMR (600 MHz, CD3OD) δ 7.44−
7.28 (m, 5 H), 7.23−7.18 (m, 2 H), 6.94−6.90 (m, 2 H), 6.73−6.68
(m, 2 H), 5.41 (d, J = 8.8 Hz, 1 H), 5.36 (d, J = 4.7 Hz, 1 H), 3.89−
3.84 (m, 1 H), 3.81 (ddd, J = 13.9, 7.2, 7.0 Hz, 1 H), 3.47−3.32 (m, 8
4050
dx.doi.org/10.1021/jm400265k | J. Med. Chem. 2013, 56, 4044−4052