564 Chem. Res. Toxicol., Vol. 10, No. 5, 1997
Wang et al.
Ma ter ia ls. NNKOAc, [5-3H]NNKOAc (specific activity, 850
mCi/mmol), 2′-deoxy-O6-benzylguanosine, 2′-deoxy-N2-isobu-
tyrylguanosine 3′,5′-diisobutyrate, and [3H]methylated DNA
were prepared as previously described (8, 11-14). 3-[2-(3-
Pyridyl)-1,3-dithian-2-yl]propan-1-al was reduced with NaBH4
in MeOH to yield 3-[2-(3-pyridyl)-1,3-dithian-2-yl]propan-1-ol
(15). [5-3H]NNKOAc-treated DNA was prepared as previously
reported (8) and dialyzed against water overnight prior to use.
Rat liver AGT was obtained according to published procedures
(9). Human AGT with a polyhistidine tag at the amino terminus
was expressed and purified as previously reported (16). Calf
thymus DNA and porcine liver esterase were purchased from
Sigma Chemical Co. (St. Louis, MO).
M-1 cm-1), 281 (ꢀ ) 7650). See Supporting Information for 1H
NMR spectrum.
2′-Deoxy-O6-[4-oxo-4-(3-p yr id yl)b u t yl]gu a n osin e (O6-
p obd G, 9). A solution of 8 (10 mg, 0.02 mmol) in acetonitrile
(0.2 mL) was added in one portion to a well-stirred solution of
N-chlorosuccinimide (10.4 mg, 0.08 mmol) and silver nitrate (15
mg, 0.088 mmol) in 80% aqueous acetonitrile (1 mL) at 25 °C
(19). After 20 min, saturated aqueous solutions of Na2SO3,
Na2CO3, and NaCl were successively added (0.2 mL each). Then
CH2Cl2 (5 mL) was added, and the mixture was filtered through
Celite. After the filter cake was washed thoroughly with
CH2Cl2, the organic filtrate was dried with anhydrous MgSO4
and filtered. Compound 9 was purified by preparative TLC,
eluting with toluene/ethyl acetate/MeOH (10:8:3) (7.4 mg, 18
µmol, 90% yield, >95% pure): 1H NMR (CDCl3) δ 9.18 (d, J )
1.9 Hz, 1H, 2-pyridyl), 8.77 (dd, J ) 4.8, 1.7 Hz, 1H, 6-pyridyl),
8.24 (dt, J ) 8.0, 1.9 Hz, 1H, 4-pyridyl), 7.62 (s, 1H, C8-H), 7.41
(dd, J ) 7.9, 4.8 Hz, 1H, 5-pyridyl), 6.70 (bs, 1H, 5′-OH), 6.22
(dd, J ) 9.6, 5.5 Hz, 1H, 1′-H), 4.86 (s, 2H, N2-H2), 4.77 (d, J )
4.9 Hz, 1H, 3′-H), 4.62 (t, J ) 6.0 Hz, 2H, O6-CH2), 4.20 (s, 1H,
5′-Ha), 3.98 (dd, J ) 12.8, 1.5 Hz, 1H, 4′-H), 3.77 (d, J ) 12.7
Hz, 1H, 5′-Hb), 3.47 (s, 1H, 3′-OH), 3.24 (t, J ) 7.0 Hz, 2H, O6-
CH2CH2CH2CO), 3.08-3.00 (m, 1H, 2′-Ha), 2.36-2.29 (m, 2H,
O6-CH2CH2), 2.25 (dd, J ) 13.5, 5.5 Hz, 1H, 2′-Hb); UV λmax
(MeOH) 234 nm (ꢀ ) 14 100 M-1 cm-1), 275 (ꢀ ) 10 400); positive
ESI-MS/MS m/ z (rel intensity) 415 (M + 1, 60), 299 (M - 2′-
deoxyribose, 100), 268 (M - pyridyloxobutyl, 38), 152 [M -
(pyridyloxobutyl + 2′-deoxyribose), 50], 148 (M - 2′-deoxygua-
nosine, 55); high-resolution FAB MS calcd for C19H22N6O5
415.1727, found 415.1734. See Supporting Information for 1H
NMR spectrum.
O6-[4-Oxo-4-(3-p yr id yl)b u t yl]gu a n in e (O6-p ob G). O6-
pobdG (2 mg, 4.8 µmol) was added to 0.1 N HCl (5 mL) and
heated at 80 °C for 30 min. After cooling to room temperature,
the mixture was neutralized with 0.1 N NaOH (5 mL) and
applied to a C18 Sep-pak cartridge (Waters Corp., Milford, MA).
The product was eluted with H2O:MeOH (1:1) and identified as
O6-pobG: 1H NMR (DMSO-d6) δ 12.55 (s, 1H, N9H), 9.14 (d, J
) 1.5 Hz, 2-pyridyl), 8.78 (dd, J ) 4.8, 1.5 Hz, 1H, 4-pyridyl),
8.33-8.31 (m, 1H, 6-pyridyl), 7.78 (s, 1H, C8-H), 7.56 (dd, J )
7.9, 4.9 Hz, 1H, 5-pyridyl), 6.20 (s, 2H, N2H2), 4.45 (t, J ) 6.6
Hz, 2H, O6-CH2), 3.26 (t, J ) 6.8 Hz, 2H, O6-CH2CH2CH2), 2.15-
2.09 (m, 2H, O6-CH2CH2); positive ESI-MS/MS m/ z (rel inten-
sity) 299 (M + 1, 90), 152 (M - pyridyloxobutyl, 50), 148 (M -
guanine, 100); UV λmax (1:1 MeOH:H2O) 276 nm.
Sta bility Stu d ies. (a) O6-pobdG (1.1 mM) was incubated
in 50 mM HEPES (pH 7.8) in the presence or absence of 1.2
mM DTT for 30 min at 37 °C. (b) O6-pobdG (1 mM) was heated
in 10 mM sodium cacodylate (pH 7.0) at 100 °C for 60 min prior
to HPLC analysis. (c) O6-pobdG (1 mM) in 10 mM sodium
cacodylate (pH 7.0) and 10 mM sodium azide were incubated
at 37 °C for up to 13 days prior to HPLC analysis. Following
the addition of 0.1 vol of 1 N HCl, O6-pobdG (1 mM) in 10 mM
sodium cacodylate (pH 7.0) was heated at 80 °C for 30 min prior
to HPLC analysis. (d) Finally, the stability of O6-pobdG was
also determined under strong acid hydrolysis conditions (0.8 N
HCl, 80 °C, 1 h). All mixtures were analyzed by HPLC using a
Phenomenex Bondaclone C18 column (300 × 3.9 mm; Torrance,
CA) eluted with solvent A (20 mM sodium phosphate, pH 7.0)
and solvent B (95% methanol) with a linear gradient from 100%
solvent A to 50% solvent A/50% solvent B over 20 min followed
by a 10 min hold at 50% solvent A/50% solvent B (flow rate, 1
mL/min). The retention times (min) of the compounds are as
follows: guanine (11.0), HPB (20.0), O6-pobG (26.6), and O6-
pobdG (27.2).
DNA Hyd r olysis. [5-3H]NNKOAc-treated DNA was heated
in 0.1 N HCl at 80 °C for 0.5 h and frozen at -20 °C until
analysis. The sample was neutralized with 1 M potassium
phosphate (pH 7.4, 0.2 mL) prior to analysis by HPLC with
radioflow detection. The mixture was separated on a Phenom-
enex Bondaclone C18 column (300 × 3.9 mm; Torrance, CA) with
a linear gradient from 100% solvent A to 50% solvent A/50%
solvent B over 60 min (flow rate, 1 mL/min). The retention time
In str u m en ta l An a lyses. NMR spectra were acquired with
a Bruker Model AM360 WB spectrometer and are reported in
ppm relative to an external standard. UV spectra were collected
on a Hewlett Packard 8425A diode array spectrophotometer,
which was computer controlled by HP 89530 MS-DOS UV-vis
operating software. HPLC analyses were carried out with a
Waters 510 system (Millipore, Waters Division, Milford, MA)
with a Shimadzu SPD-UV-vis detector or â-Ram radioflow
detector (IN/US Systems, Inc., Tampa, FL). Electrospray MS
analyses were obtained on a Finnigan Model TSQ 700 tandem
quadruple mass spectrometer with a LC interface.
2′-Deoxy-N2-isobu tyr yl-O6-[3-[2-(3-p yr id yl)-1,3-d ith ia n -
2-yl]p r op yl]gu a n osin e 3′,5′-Diisobu tyr a te (7). 2′-Deoxy-N2-
isobutyrylguanosine 3′,5′-diisobutyrate (0.239 g, 0.5 mmol),
triphenylphosphine (0.197 g, 0.75 mmol), and 4-(1,3-dithian-2-
yl)-4-(3-pyridyl)butan-1-ol (0.191 g, 0.75 mmol) were combined,
dried over P2O5 under vacuum for 1-2 days, and dissolved in
10 mL of anhydrous 1,4-dioxane. Diethyl azodicarboxylate
(0.131 g, 0.75 mmol) in anhydrous 1,4-dioxane (2 mL) was added
dropwise at room temperature (17, 18). After 18 h, the reaction
mixture was concentrated under reduced pressure. CH2Cl2 (250
mL) was added, and the solution was washed twice with H2O,
dried over MgSO4, and filtered. The product was purified by
preparative TLC (PZF 254S, 20 × 20 cm, 1 mm thick; EM
Separations Technology, Gibbstown, NJ ) with elution by
CH2Cl2/ethyl acetate (1:1). The lowest band contained 7 (268
mg, 0.38 mmol, 75% yield, >95% pure): 1H NMR (CDCl3) δ 9.22
(d, J ) 1.9 Hz, 1H, 2-pyridyl), 8.55 (dd, J ) 4.9, 1.1 Hz, 1H,
6-pyridyl), 8.46 (d, J ) 8.1 Hz, 1H, 4-pyridyl), 8.23 (s, 1H, N2-
H), 7.95 (s, 1H, C8-H), 7.49 (dd, J ) 8.1, 5.0 Hz, 1H, 5-pyridyl),
6.37 (dd, J ) 8.0, 6.1 Hz, 1H, 1′-H), 5.42-5.41 (m, 1H, 3′-H),
4.49-4.30 (m, 5H, O6-CH2, 5′-H, 4′-H), 3.00-2.55 [m, 9H, 2′-
CH2, SCH2CH2CH2S, (CH3)2CH], 2.25-2.20 (m, 2H, O6-CH2-
CH2CH2), 1.99-1.86 (m, 4H, SCH2CH2CH2S, O6-CH2CH2),
1.29-1.13 [m, 18H, (CH3)2CH]; positive ESI-MS/MS m/ z (rel
intensity) 715 (M + 1, 100), 238 (M - 2′-deoxy-N2-isobu-
tyrylguanosine 3′,5′-diisobutyrate, 90). See Supporting Infor-
mation for 1H NMR spectrum.
2′-Deoxy-O6-[3-[2-(3-pyr idyl)-1,3-dith ian -2-yl]pr opyl]gu a-
n osin e (8). NaOH (2 N, 10 mL) was added to 7 (30 mg, 0.042
mmol) in MeOH (10 mL) at room temperature. After 3 h, the
pH was adjusted to 7 with 80% aqueous acetic acid, and the
reaction mixture was extracted with ethyl acetate. The organic
layers were combined, washed with H2O, dried over MgSO4, and
filtered. Compound 8 was purified by preparative TLC, eluting
with toluene/ethyl acetate/MeOH (10:8:3) (18 mg, 0.036 mmol,
85% yield, >95% pure): 1H NMR (CDCl3) δ 9.14 (d, J ) 2.2 Hz,
1H, 2-pyridyl), 8.49 (dd, J ) 4.7, 1.4 Hz, 1H, 6-pyridyl), 8.21
(dt, J ) 8.1, 2.1 Hz, 1H, 4-pyridyl), 7.61 (s, 1H, C8-H), 7.29 (dd,
J ) 8.1, 4.7 Hz, 1H, 5-pyridyl), 6.69 (d, J ) 11.1 Hz, 1H, 5′-
OH), 6.22 (dd, J ) 9.4, 5.6 Hz, 1H, 1′-H), 4.96 (s, 2H, N2-H2),
4.75 (bd, J ) 4.6 Hz, 1H, 3′-H), 4.36 (t, J ) 6.6 Hz, 2H, O6-
CH2), 4.20 (s, 1H, 5′-Ha), 3.96 (d, J ) 12.1 Hz, 1H, 4′-H), 3.75 (t,
J ) 11.4 Hz, 1H, 5′-Hb), 3.03-2.96 (m, 2H, 3′-OH, 2′-Ha), 2.73-
2.59 (m, 4H, SCH2CH2CH2S), 2.26 (dd, J ) 13.3, 5.6 Hz, 1H,
2′-Hb), 2.21-2.16 (m, 2H, O6-CH2CH2CH2), 2.00-1.79 (m, 4H,
O6-CH2CH2, SCH2CH2CH2S); positive ESI-MS/MS m/ z (rel
intensity) 505 (M + 1, 100), 389 (M - 2′-deoxyribose, 51), 238
(M - 2′-deoxyguanosine, 49); λmax (MeOH) 250 nm (ꢀ ) 8700