Helical Porous Protein Mimics
481
[4-3,4,5]16G1-CH2OH
(m, 1H), 5.38 (m, 1H), 5.28 (m, 1H), 5.26 (m, 1H), 4.50 (m, 4H), 4.48
(s, 2H). δC (125 MHz, CDCl3) 159.8, 139.4, 132.9, 117.7, 107.4, 101.8,
68.9, 46.2. Found: C 65.4, H 6.3. Calc. for C13H15ClO2: C 65.4, H 6.3%.
White solid, 1.02 g (99%), mp 80◦C. δH (500 MHz, CDCl3) 7.31
(d, 4H, J 9.0 Hz), 7.27 (d, 2H, J 9.0 Hz), 6.87 (d, 4H, J 9.0), 6.75 (d,
2H, J 9.0), 6.64 (s, 2H), 5.00 (s, 4H), 4.93 (s, 2H), 4.55 (d, 2H, J 5.5),
3.95 (t, 4H, J 6.5), 3.91 (t, 2H, J 6.5), 1.81–1.71 (m, 6H), 1.48–1.41
(m, 6H), 1.39–1.22 (m, 72H), 0.88 (t, 9H, J 7.0). δC (125 MHz, CDCl3)
158.9, 153.0, 137.8, 136.4, 130.2, 129.9, 114.4, 114.1, 106.6, 74.8, 71.0,
68.0, 67.9, 65.4, 31.9, 29.7, 29.6 (×2), 29.4, 29.3 (×2), 26.1, 22.7, 14.1.
Found: C 79.5, H 10.7. Calc. for C76H122O7: C 79.5, H 10.7%.
[3,5]AllylG1-CH2-Boc-L-Tyr-L-Ala-OMe 12
Boc-l-Tyr(OH)-l-Ala-OMe 11 (200 mg, 0.546 mmol) was added to
a degassed suspension of K2CO3 (226 mg, 1.64 mmol) in DMF (10 mL)
and heated to 70◦C, then 3,5-diallyloxybenzyl chloride (11) (143 mg,
0.600 mmol) was added. The reaction mixture was stirred overnight at
70◦C, cooled to 23◦C and taken up in EtOAc, washed with water (5×),
brine, dried over MgSO4, and concentrated under reduced pressure.
The crude product was purified by flash column chromatography: silica
gel/2% MeOH in CH2Cl2 to give 210.5 mg (68%) of the [3,5]allyl-G1-
CH2Boc-l-Tyr-l-Ala-OMe 12 as a yellowish oil. δH (500 MHz, CDCl3)
7.10 (d, 2H, J 8.5), 6.88 (d, 2H, J 8.5), 6.59 (m, 2H), 6.44 (m, 1H), 6.37
(d, 1H, J 2.5), 6.07–5.99 (m, 2H), 5.41 (m, 1H), 5.38 (m, 1H), 5.28 (m,
1H), 5.26 (m, 1H), 4.96 (s, 3H), 4.51 (d, 2H, J 5.5), 4.29 (s, 1H), 3.71 (s,
3H), 3.07–2.96 (m, 2H), 1.42 (s, 9H), 1.34 (d, 3H, J 7.0). δC (125 MHz,
CDCl3) 172.8, 170.7, 159.9, 139.4, 133.1, 130.4, 117.7, 115.1, 106.1,
101.3, 69.9, 68.9, 52.4, 48.1, 37.4, 28.2, 18.4. Found: C 65.5, H 7.1,
N 4.9. Calc. for C31H40N2O8: C 65.5, H 7.1, N 4.9%.
[4-3,4,5]nG1-CH2Cl (n = 12, 16)
To a solution of [4-3,4,5]nG1-CH2OH (n = 12, 16) (1 equiv.) and
DTBMP (1.5 equiv.) in dry CH2Cl2 was added slowly SOCl2 (1.1 equiv.)
and the reaction allowed to stir at 23◦C for 5 min. TLC analysis (7:1
Hex:EtOAc) showed completion. Solvent was removed under reduced
pressure and the residue was recrystallized from acetone to give the
benzyl chlorides 7 and 8, which decomposed upon melting.
[4-3,4,5]12G1-CH2Cl 7
Off-white solid, 3.77 g (95%). δH (500 MHz, CDCl3) 7.33 (d, 4H, J
8.8), 7.28 (d, 2H, J 8.3), 6.90 (d, 4H, J 8.6), 6.77 (d, 2H, J 8.6), 6.68 (s,
2H), 3.97 (t, 4H, J 6.6), 3.93 (t, 2H, J 6.6), 1.79 (m, 6H), 1.46 (m, 6H),
1.40–1.21 (m, 48H), 0.89 (t, 9H, J 6.8). δC (125 MHz, CDCl3) 158.9,
153.0, 138.6, 132.6, 130.2, 129.7, 129.2, 128.8, 114.4, 114.1, 108.4,
74.8, 71.1, 68.0 (×2), 46.8, 31.9, 29.7, 29.6 (×2), 29.4, 29.3 (×2), 26.1,
22.7, 14.1. Found: C 77.0, H 9.8. Calc. for C64H97ClO6: C 77.0, H 9.8%.
[3,5]OHG1-CH2-Boc-L-Tyr-L-Ala-OMe 13
Palladium(ii) acetate (4 mg, 0.018 mmol) was added to a thor-
oughly degassed solution of [3,5]allylG1-CH2Boc-l-Tyr-l-Ala-OMe 12
(210 mg, 0.369 mmol), PPh3 (24 mg, 0.092 mmol), and Et3NHCO2H
(164 mg, 1.11 mmol) in EtOH (20 mL). The reaction mixture was
refluxed overnight, cooled to room temperature and then taken up in
EtOAc, washed with water (3×), brine, dried over MgSO4, and con-
centrated under reduced pressure. The crude product was purified by
flash column chromatography (silica gel/5% MeOH in CH2Cl2) to give
124.5 mg (70%) of [3,5]OHG1-CH2Boc-l-Tyr-l-Ala-OMe 13 as off-
white crystals. δH (500 MHz, CDCl3) 6.96 (br s, 4H), 6.75 (d, 2H, J 9),
6.65 (s, 1H), 6.41 (s, 2H), 6.32 (s, 1H), 5.21 (br s, 1H), 4.84 (s, 2H),
4.48 (m, 1H), 4.27 (br s, 1H), 3.66 (s, 3H), 2.91 (m, 2H), 1.29 (d, 3H,
J 7.0). δC (125 MHz, CDCl3) 172.8, 170.8, 157.9, 137.0, 130.4, 128.5,
127.4, 115.0, 70.0, 52.3, 48.0, 37.4, 33.9, 28.2, 18.3. Found: C 61.5,
H 6.6, N 5.7. Calc. for C25H32N2O8: C 61.5, H 6.6, N 5.7%.
[4-3,4,5]16G1-CH2Cl 8
Off-white solid, 2.59 g (89%). δH (500 MHz, CDCl3) 7.31 (d, 4H, J
8.5), 7.26 (d, 2H, J 8.5), 6.88 (d, 4H, J 8.5), 6.75 (d, 2H, J 8.5), 6.67 (s,
2H), 5.01 (s, 4H), 4.93 (s, 2H), 4.48 (s, 2H), 3.96 (t, 4H, J 6.5), 3.92 (t,
2H, J 6.5), 1.80–1.71 (m, 6H), 1.48–1.40 (m, 6H), 1.38–1.20 (m, 72H),
0.88 (t, 9H, J 7.0). δC (125 MHz, CDCl3) 158.9, 153.0, 137.8, 130.2,
129.9, 114.4, 114.1, 106.6, 74.8, 71.0, 68.0, 67.9, 65.4, 31.9, 29.7, 29.6
(×2), 29.4, 29.3 (×2), 26.1, 22.7, 14.1. Found: C 78.3, H 10.4. Calc. for
C76H121ClO6: C 78.3, H 10.5%.
3,5-Diallyloxybenzyl Chloride 10
A mixture of methyl 3,5-dihydroxybenzoate (1.00 g, 5.95 mmol),
K2CO3 (2.46 g, 17.8 mmol) and allyl bromide (1.44 g, 11.9 mmol) in
acetone (80 mL) was refluxed under argon for 4 h. TLC analysis (5%
MeOH in CH2Cl2) showed completion of reaction. After cooling to
23◦C, the reaction mixture was partitioned between ethyl acetate and
water. The organic phase was washed with water (3×), dried over
MgSO4, and concentrated under reduced pressure. The crude product
was passed through a silica plug eluted with 7:1 hexane/EtOAc to give
the methyl 3,5-diallyloxybenzoate as a clear oil which was taken up in
dry THF (15 mL) and added slowly to a suspension of LAH (250 mg,
6.55 mmol) in dry THF (10 mL). After stirring for 30 min at 23◦C,
TLC analysis (7:1 hexane/EtOAc) showed completion. Reaction was
quenched by slow successive addition of water (250 µL), followed by
15% aqueous NaOH (250 µL), and water (750 µL). Stirring was con-
tinued until H2 evolution ceased, and the resulting lithium salts were
filtered off and rinsed generously with CH2Cl2, the filtrate was dried
over MgSO4, and concentrated under reduced pressure to give 1.20 g
(92% over two steps) of the diallyloxybenzyl alcohol. This diallyloxy-
benzyl alcohol (1.20 g, 5.45 mmol) was taken up in dry CH2Cl2 (40 mL)
and a catalytic amount of DMF added.To this solution was slowly added
SOCl2 (707 mg, 5.99 mmol), and the reaction was stirred at 23◦C for
5 min after which TLC analysis (7:1 hexane/EtOAc) showed comple-
tion. The reaction mixture was diluted with CH2Cl2 and quenched by
slow addition of water. The phases were separated and the organic phase
was washed with water (1×) and saturated aqueous NaHCO3 (2×). The
organic phase was dried over MgSO4 and concentrated under reduced
pressure to give 1.20 g (92%) of 3,5-diallyloxybenzyl chloride 10 as a
yellow oil, which was used without further purification. δH (500 MHz,
CDCl3) 6.54 (d, 2H, J 2.5), 6.44 (t, 1H, J 2), 6.06–5.99 (m, 2H), 5.41
[4-3,4,5-3,5]nG2-CH2-Boc-L-Tyr-L-Ala-OMe (n = 12, 16)
[3,5]OHG1-CH2-Boc-l-Tyr-l-Ala-OMe 13 (1 equiv.) was added to a
thoroughlydegassedsuspensionofK2CO3 (3equiv.)inDMF.Theresult-
ing mixture was heated to 70◦C, at which point the tri-substituted benzyl
chloride 7 or 8 (2 equiv.) was added. The reaction was stirred at 70◦C
overnight, cooled to 23◦C and the product was precipitated into water,
collected by suction filtration, air dried, and purified by flash column
chromatography (silica gel/1% MeOH in CH2Cl2) followed by precip-
itation in MeOH from minimal CH2Cl2 to give dendritic dipeptides 14
or 15 as off-white solid.
[4-3,4,5-3,5]12G2-CH2-Boc-L-Tyr-L-Ala-OMe 14
Off-white solid, 120 mg (61%). mp 96–98◦C, [α]D20 −8.3 (c
0.05 in THF). m/z (MALDI-TOF) for C153H224N2O20 calc. 2434.41
[M + Na+]; found 2434.43. HPLC > 99% pure. δH (500 MHz, CDCl3)
7.30 (d, 8H, J 8.5), 7.27 (d, 4H, J 8.5), 7.11 (d, 2H, J 8.5), 6.90 (d, 2H,
J 8.5), 6.86 (d, 8H, J 8.5), 6.75 (d, 4H, J 8.5), 6.73 (s, 4H), 6.68 (m,
2H), 6.56 (m, 1H), 6.34 (d, 1H, J 7.0), 5.00 (s, 8H), 4.97 (s, 2H), 4.91
(d, 8H, J 3.5), 4.51 (m, 1H), 4.25 (br s, 1H), 3.96–3.90 (m, 12H), 3.69
(s, 3H), 3.05–2.94 (m, 2H), 1.80–1.72 (m, 12H), 1.45 (m, 12H), 1.41 (s,
9H), 1.34 (d, 3H, J 7.0), 1.33–1.20 (m, 96H), 0.88 (t, 18H, J 6.5). δC
(125 MHz, CDCl3) 170.7, 160.2, 159.0 (×2), 149.4, 149.1, 139.4, 130.4
(×2), 130.1, 129.2, 129.1, 129.0, 121.0, 115.5, 115.1, 114.5, 106.4,
101.5, 71.4, 71.3, 70.1, 70.0, 68.1, 52.4, 48.1, 31.9, 29.7, 29.6, 29.4,
29.3, 28.3, 26.1, 22.7, 18.4, 14.1. Found: C 76.2, H 9.3, N 1.2%. Calc.
for C153H224N2O20: C 76.2, H 9.4, N 1.2%.