A molecular cage of nickel(ii) and copper(i): A [{Ni(L)2} 2(CuI)6] cluster resembling the active site of nickel-containing enzymes

Article abstract of DOI:10.1039/b900423h

A new mononuclear low-spin nickel(ii) dithiolato complex, [NiL₂] (1), reacts with copper iodide to form the hetero-octanuclear cluster [{Ni(L)₂}₂(CuI)₆] (2) with four trigonal-planar CuI₂S and two tet

Full text of DOI:10.1039/b900423h

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A molecular cage of nickel(II) and copper(I): a [{Ni(L)2}2(CuI)6] cluster
resembling the active site of nickel-containing enzymesw
Raja Angamuthu,a Lodewijk L. Gelauff,a Maxime A. Siegler,b Anthony L. Spekb
and Elisabeth Bouwman*a
Received (in Cambridge, UK) 8th January 2009, Accepted 6th February 2009
First published as an Advance Article on the web 19th March 2009
DOI: 10.1039/b900423h
A new mononuclear low-spin nickel(II) dithiolato complex,
[NiL2] (1), reacts with copper iodide to form the hetero-
octanuclear cluster [{Ni(L)2}2(CuI)6] (2) with four trigonal-planar
CuI2S and two tetrahedral CuI2S2 sites; anagostic interactions
between the nickel(II) ions and aromatic protons have been
demonstrated by variable-temperature NMR studies to pertain
in solution.
structure and function of protein active sites, as described
above.1,3,5–8
Herein, we report the synthesis of a new bidentate S2
thioether-thiolate ligand (L),w the mononuclear low-spin
nickel complex (1)w and the hetero-octanuclear nickel(II)
copper(I) cluster complex [{Ni(L)2}2(CuI)6] (2),z which
contains two NiS4 units, four trigonal-planar CuI2S and two
tetrahedral CuI2S2 sites.
The reaction of Ni(acac)2 with two equivalents of the
thiouronium chloride salt of the ligand, in the presence of
two equivalents of tetramethylammonium hydroxide, led to an
immediate color change to deep brown and the new low-spin
square-planar complex [Ni(L)2] (1) was isolated as flocculent
reddish-brown crystals in high yield (Scheme 1). Equimolar
solutions of Ni(L)2 (1) in dichloromethane and copper(I)
iodide in acetonitrile were mixed under argon and stirred for
an hour to yield a dark brown precipitate. A saturated
solution of this product in absolute ethanol was left for slow
evaporation under argon atmosphere and dark brown crystals
were formed over several days. The molecular structure of 2,
which has been determined by single-crystal X-ray diffraction,
shows a spectacular cage structure formed by the thiolate
sulfurs and copper iodide moieties.
Nickel thiolato complexes, including (hetero-)multinuclear
[NiFe], [NiCu], [NiZn] and [NiNi] units, are of interest in the
context of their rich redox chemistry1,2 and structural diversity
in supramolecular architectures.3,4 Furthermore, they are
important as synthetic models1,3,5–8 for environmentally and
industrially significant enzymes like hydrogenases, superoxide
dismutases and CODH/ACS. It is noteworthy that the
bifunctional enzyme CODH/ACS has an important role in
the global carbon cycle as the C-cluster, an Ni–Fe–S centre, of
this enzyme reduces carbon dioxide to carbon monoxide and
the A-cluster assembles acetyl-CoA from a methyl group
(Chart 1), coenzyme-A and the CO generated by the
C-cluster.9 The A-cluster is a complex metallocofactor,
containing an Fe4S4 group connected by cysteine bridging to
a dinuclear [MpNid] site, where the proximal metal Mp is
predominantly Cu in the as-isolated enzyme from native
Moorella thermoacetica.10 However, [NiNi] and [ZnNi] forms
are also known to have been isolated and well studied.11–14
The distal nickel Nid is in a square-planar (NiN2S2) geometry
derived from two backbone carboxamido nitrogens and two
Cys-S thiolates. The Nid is bridged through the two Cys-S
donors to the proximal metal Mp that is in a tetrahedral
coordination environment. A fourth nonprotein ligand is
bound to the Mp in addition to the Cys-S bridging to the
Fe4S4 to complete the coordination sphere. The focus of our
attention is to study the chemistry involving the synthesis and
reactivity of nickel thiolate complexes in relation with the
The asymmetric unit of 2 contains one crystallographically
independent ordered molecule (Fig. 1), and no solvent mole-
cules are found in the crystal lattice. The two Ni(II) centers are
in slightly distorted square-planar environments with two
thiolate donors and two thioether sulfurs in enforced cis
positions. The Ni–Sthiolate distances [2.1641(14)–2.1788(14) A]
are slightly shorter than the Ni–Sthioether distances
[2.1856(15)–2.2028(16) A], as expected. The nickel centers
have a slight tetrahedral distortion with a dihedral angle of
3.58(8)1 for Ni1 (between the triangular planes S6Ni1S9
and S16Ni1S19) and 9.13(8)1 for Ni1A (between the planes
S6ANi1S9A and S16ANi1S19A). The six copper iodide
moieties are forming altogether a twelve-membered Cu6I6
puckered crown (Fig. 2) in which the six iodides are bridged
via the copper ions in m2 fashion to form this crown. The two
square-planar NiS4 units are capping this crown from both
sides utilizing their thiolate sulfurs to form 2; the dihedral
a Leiden Institute of Chemistry, Gorlaeus Laboratories, Leiden
University, P.O. Box 9502, Leiden, 2300 RA, The Netherlands.
E-mail: bouwman@chem.leidenuniv.nl; Fax: +31 71 527 4451;
Tel: +31 71 527 4550
b Bijvoet Center for Biomolecular Research, Crystal and Structural
Chemistry, Utrecht University, Padualaan 8, Utrecht, 3584 CH,
The Netherlands
w Electronic supplementary information (ESI) available: Experimental
details on the synthesis of the ligand and [Ni(L)2] (1), crystallographic
details of 2 and the NMR (HSQC) spectrum. CCDC 715787. For ESI
and crystallographic data in CIF or other electronic format see DOI:
10.1039/b900423h
Chart 1 Active site structures of nickel-containing enzymes.
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Scheme 1 Synthesis of complex 1.
Fig. 3 Perspective view of one [Ni(L)2] part of [{Ni(L)2}2(CuI)6] 2
with the atomic labeling of selected atoms. The nickel-to-hydrogen
interactions are shown; only the hydrogens present in the 4-methyl-
phenyl rings are shown for clarity. Ni1ꢁ ꢁ ꢁH111, 2.739; Ni1ꢁ ꢁ ꢁH251,
2.781; Ni1Aꢁ ꢁ ꢁH152, 2.696; Ni1Aꢁ ꢁ ꢁH212, 2.626 A.
ion. The bond distances of iodide to copper vary due to this
difference in bridging; the angles in the trigonal-planar CuI2S
moieties are not strictly 1201. Likewise, the angles in the
tetrahedral CuI2S2 moieties also deviate from the ideal angle
of 109.51, and range from 98.61(4)1 to 122.29(5)1.
An interesting interaction between the nickel(II) ion and the
ortho-protons of the phenyl rings is observed, with distances of
about 2.7 A in both NiS4 units of 2 (Fig. 3). Considering these
interactions as bonding, the coordination geometry of the
nickel ion could be described as pseudo-octahedral, in an
H2N2S2 chromophore, in which two ortho-protons occupy
the axial sites of the octahedron.
Fig. 1 Perspective view of [{Ni(L)2}2(CuI)6] (2). Ni, green; Cu,
brown; S, red; I, violet; C, gray. Hydrogens are omitted for clarity.
Atoms that are labeled with and without ‘A’ are crystallographically
independent. Selected distances (A) and angles (1): Ni1ꢁ ꢁ ꢁNi1A,
6.6421(9);
Niꢁ ꢁ ꢁCu,
3.6–3.9;
Ni–S,
2.1641(14)–2.2028(16);
S6–Ni1–S9, 92.17(6); S6–Ni1–S16, 85.82(5); S6–Ni1–S19, 176.89 (6);
S9–Ni1–S16, 176.47(6); S9–Ni1–S19, 90.04(6); S16–Ni1–S19, 92.08(6).
To investigate whether the structure of the [{Ni(L)2}2(CuI)6]
1
(2) is retained in solution, H NMR spectra of the complex
have been recorded in CD2Cl2 solution at different tempera-
tures ranging from 183 to 303 K (Fig. 4). Even though there
are four crystallographically distinct ligands in the complex,
the 1H NMR spectrum at room temperature shows only a
single set of signals, suggesting that the four ligands are
Fig. 2 Perspective views of the Cu6I6 puckered-crown (left) and
Cu6I6S4 cage (right) in [{Ni(L)2}2(CuI)6] (2). Selected bond lengths
(A) and angles (1): Cu1ꢁ ꢁ ꢁCu1A, 2.6032(10); Cu2ꢁ ꢁ ꢁCu2A, 4.0309(10);
Cu1ꢁ ꢁ ꢁCu3, 5.3644(2); Cu1ꢁ ꢁ ꢁCu2, 3.9844(9); Cu(tetrahedral)–S,
2.4059(14)–2.4509(15); Cu(trigonal-planar)–S, 2.2780(15)–2.2925(14);
Cu1–I1, 2.5955(8); Cu1–I2, 2.5271(8); Cu2–I2A, 2.6337(7); Cu2–I3A,
2.6296(7); S6–Cu1–I1, 109.11(4); S6–Cu1–I2, 126.61(4); I1–Cu1–I2,
124.21(3);
S6–Cu2–I3A,
98.61(4);
S6–Cu2–I2A,
110.40(4);
I3A–Cu2–S16A, 107.65(4); I2A–Cu2–S16A, 99.90(4); S6–Cu2–S16A,
122.29(5); I2A–Cu2–I3A, 119.38(3).
angle defined by these two S4 planes is 72.10(5)1. Each thiolate
sulfur is bound to two copper(I) ions, of which one is in a
trigonal-planar geometry and the other possesses tetrahedral
geometry. The tetrahedral copper ions are shared between the
two NiS4 units by direct S–Cu–S bridging, while the trigonal-
planar copper ions are shared through a S–Cu–I–Cu–S bridge.
The four thiolate sulfurs and the six copper(I) iodide units
together form a cage structure in the middle of the two NiS4
units (Fig. 2).
Fig. 4 1H NMR of [{Ni(L)2}2(CuI)6] (2) in CD2Cl2 recorded at
different temperatures ranging between 183 and 303 K. %, signals
from CD2Cl2 (5.32 ppm) and acetone (2 ppm); J, signals from the
ortho-protons of the phenyl ring.
The trigonal-planar copper ions, Cu1, Cu1A, Cu3 and
Cu3A, are found in an I2S coordination sphere of which one
of the two iodide ions is bridged to a trigonal-planar copper
ion, while the other iodide is bridged to a tetrahedral copper
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equivalent in solution. Interestingly, upon cooling the sample
to 263 K the signals start to broaden and eventually split into
multiple sharp signals at 183 K. The fluxional axial and
equatorial exchange of the dimethyl groups is slow or inhibited
at low temperature; the singlet of the dimethyl protons
(at 1.4 ppm) consequently splits into four sharp signals.
Furthermore, the two aromatic resonances (at 7.1 and
7.8 ppm) are split in a number of resonances with different
intensities; the protons involved in an interaction with the
nickel ions are observed at d 9.5 ppm upon cooling to 183 K.
The downfield shift of these protons in the NMR spectrum,
and the fact that they are pointing in the direction of the
occupied dz2 orbital of the nickel(II) ions (Fig. 3) at a distance
of about 2.7 A on average in the crystal structure, suggests
that these interactions should be considered as anagostic or
hydrogen bonding.15–17
Jan Reedijk and Mr Tiddo J. Mooibroek are gratefully
acknowledged for stimulating discussions.
Notes and references
z Synthesis of [Ni(L)2(CuI)6] (2). A solution of CuI (191 mg,
1 mmol) in 10 ml acetonitrile was added to a solution of [Ni(L)2]
(483 mg, 1 mmol) in 10 ml chloroform and stirred for an hour. After
evaporation of the solvent, the product was recrystallized by the
slow evaporation of an ethanolic solution in an argon atmosphere.
Dark-brown crystals suitable for X-ray diffraction were obtained over
a few days. Complex 2 was reproduced in bulk by the reaction between
one equivalent of complex 1 and three equivalents of CuI in aceto-
nitrile as a brown powder (87%). 1H NMR dH [300.13 MHz, CD2Cl2,
298 K]) 7.84 (bs, 8H, phenyl-ortho–H), 7.22 (d, 8H, phenyl-meta–H),
3.06 (s, 8H, –CH2–S–), 2.38 (s, 12H, CH3–Ph), 1.46 (s, 24H,
–C(CH3)2–); 13C NMR dC [75.47 MHz, CD2Cl2, 298 K] 143.52
(Ph–C4), 136.54 (Ph–C3), 131.18 (Ph–C2), 122.75 (Ph–C1), 64.35
(–C(CH3)2–), 49.27 (–CH2–), 27.69 (–C(CH3)2–), 21.94 (CH3–Ph).
Elemental analysis (%), calc. for C44H60Cu6I6Ni2S8ꢁ3CHCl3,
C 22.91, H 2.58, S 10.41, found, C 22.67, H 2.54, S 10.28. Crystallo-
graphic data for complex 2. C44H60Cu6I6Ni2S8, Fw = 2105.46, triclinic,
The cyclic voltammogram of 2 in a dichloromethane solu-
tion (Fig. S4, ESIw) shows a number of irreversible oxidation
processes (ꢂ0.273 V, ꢂ0.180 V, ꢂ0.076 V vs. Ag/AgCl) and a
single irreversible reduction process (ꢂ0.914 V), which are
difficult to assign unequivocally due to the presence of the
large number of redox non-innocent partners available in the
multinuclear structure of 2.
ꢀ
P1 (no. 2), a = 11.6566(5), b = 14.1559(4), c = 19.9857(7) A, a =
86.088(1)1, b = 84.143(1)1, g = 70.505(2)1, V = 3090.5(2) A3, Z = 2.
67 305 reflections were measured up to a resolution of (sin y/l)max
=
0.62 Aꢂ1. 12 170 reflections were unique (Rint = 0.063), of which 8494
were observed [I 4 2s(I)]. 607 parameters were refined. R1/wR2
[I
4 2s(I)]: 0.0361/0.0553. R1/wR2 [all refl.]: 0.0742/0.0634.
S = 1.022. Residual electron density between ꢂ0.90 and 0.98 eAꢂ3
.
The presence of the 4-methylphenyl ring bound to the
thioether sulfur paves the way to exhibit the attraction between
the ortho-protons of the phenyl ring and the low-spin Ni(II),
as identified in the crystal structure and NMR spectroscopy
(Fig. 3 and 4). To the best of our knowledge, [{Ni(L)2}2(CuI)6]
is the first compound with a NiS4 coordination displaying the
aforesaid nickel to proton anagostic interactions.
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forming the cage in
2 resemble the A-cluster of the
CODH/ACS with a low-spin square-planar nickel (Nid) and
bridging m3-thiolates connecting the tetrahedral copper (Mp).
In summary, a novel molecular cage of hetero-octanuclear
nickel(II) copper(I) cluster, [{Ni(L)2}2(CuI)6] (2), has been
isolated in good yield by the reaction of the low-spin square-
planar NiS4 complex (1) with CuI and has been characterized
using single-crystal X-ray diffraction, NMR and electro-
chemistry techniques. The anagostic interactions between the
nickel and aromatic ortho-protons have been demonstrated by
the variable-temperature NMR studies also to pertain in
solution. Reactivity studies of Ni(L)2 (1) and [{Ni(L)2}2(CuI)6]
(2) with small molecules and iron complexes are in progress to
obtain better models for the nickel-containing enzymes.
X-Ray crystallographic work was supported (M.S. and A.L.S.)
by the Council for the Chemical Sciences, The Netherlands
Organization for Scientific Research (CW-NWO). Prof.
21 P. Jayapal, M. Sundararajan, I. H. Hillier and N. A. Burton, Phys.
Chem. Chem. Phys., 2008, 10, 4249–4257.
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2702 | Chem. Commun., 2009, 2700–2702