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Y. Wang et al. / Bioorg. Med. Chem. Lett. 15 (2005) 1327–1331
the analogous epoxidation and base catalysed ring-
closure described earlier (11 ! 13) was not an option
for intermediate 22 due to the complicating presence
of the Alloc protecting group. Thus, removal of Alloc
protection following the general conditions described
by Dessolin et al.19 provided hydrazide 23 (97%) that
was treated with the acyl fluoride of Alloc-leucine5 to
obtain acylated intermediate 24 (63%). Removal of
Alloc protection19 (96%) was followed by acylation of
amine 25 with 4-tert-butylbenzoic acid using standard
uronium activation chemistries to give substituted
hydrazide 26 (84%). Epoxidation of 26 now proceeded
smoothly to give a mixture of syn-27a and anti-27b
(62%). In an analogous manner to that described earlier
for epoxide mixture 12, we envisaged that only anti-27b
would cyclise. Thus, treatment of epoxide mixture 27
with potassium carbonate in acetonitrile, followed by
purification over silica gel, gave a new compound that
was less mobile on TLC and was identified as the cis-
heterobicycle 28 (42%). The Cbz group was then re-
placed with a benzoyl group to obtain the Boc-protected
alcohol 30 (two steps 68%). Subsequent oxidation of 30
with Dess–Martin periodinane provided N-Boc pro-
tected bicyclic ketone 31 (81%),20a which was treated
with trifluoroacetic acid to give the final fully deprotec-
ted inhibitor 32 (37%).20b
cycles 3 and 4 may provide improved potency against
CAC1 proteinases. Synthetic routes were successfully
devised and example heterobicyclic inhibitors 15 and
32 prepared. Compound 32 was designed with appropri-
ate binding moieties for cathepsin K inhibition,5 but
shows a significant increase in potency against all
CAC1 proteinases examined. This suggests that the
heterobicyclic framework defined in scaffold 4 may in-
deed be rotationally (conformationally) restricted when
compared to the equivalent methylene scaffold 2, but
still able to access the bioactive conformational space.
Therefore scaffold 4 has the potential to give high po-
tency inhibitors of CAC1 proteinases.
Acknowledgements
The authors wish to thank Cambridge University Chem-
istry Department for compound analyses and Mr. Mark
Sleeman of University of Oxford for optical rotation data.
References and notes
1. Barrett, A. J.; Rawlings, N. D.; Woessner, J. F. Handbook
of Proteolytic Enzymes; Academic: New York, 1998.
2. Lecaille, F.; Kaleta, J.; Bro¨mme, D. Chem. Rev. 2002, 102,
4459.
3. Bro¨mme, D.; Kaleta, J. Curr. Pharm. Des. 2002, 8, 1639.
4. Sajid, M.; McKerrow, J. H. Mol. Biochem. Parasitol.
2002, 120, 1.
5. For example, see Quibell, M.; Benn, A.; Flinn, N.; Monk,
T.; Ramjee, M.; Ray, P.; Wang, Y.; Watts, J. Bioorg. Med.
Chem. 2005, 13, 609, and references cited therein.
6. Quibell, M.; Benn, A.; Flinn, N.; Monk, T.; Ramjee, M.;
Wang, Y.; Watts, J. Bioorg. Med. Chem. 2004, 12(21),
5689.
Bicyclic inhibitors 15 and 32 were screened against
cathepsins K, L, S and B as well as the parasitic protein-
ases cruzain and CPB.12 Preliminary steady-state inhibi-
tion constants (Ksis) are shown in Table 1 (mean of n = 3
determinations). The substituents detailed in Table 1
were chosen to provide a direct comparison with our
previously detailed bicyclic inhibitors 3321 and 34.5
7. Fenwick, A. E.; Gribble, A. D.; Ife, R. J.; Stevens, N.;
Witherington, J. Bioorg. Med. Chem. Lett. 2001, 11,
199.
8. For example, see: Fischer, S.; Dunbrack, R. L., Jr.;
Karplus, M. J. Am. Chem. Soc. 1994, 116, 11931.
9. In-house molecular modelling was performed as previ-
ously described in detail using WebLab ViewerPro (http://
Monk, T.; Ramjee, M.; Ray, P.; Wang, Y.; Quibell, M.
Bioorg. Med. Chem. 2004, 12, 2903.
10. Shireman, B. T.; Miller, M. J.; Jonas, M.; Wiest, O. J.
Org. Chem. 2001, 66, 6046.
11. Galardy, R. E.; Alger, J. R.; Liakopoulou-Kyriakides, M.
Int. J. Pept. Protein Res. 1982, 19, 123.
12. Full experimental protocols for Schemes 1 and 2 are
described in: Quibell, M.; Ray, P. C.; Watts, J. P. WO
Patent 04007501. Within this patent see syntheses for 6 (pp
416–423); 15 (p 415); 22 (pp 426–432); 32 (pp 433–437) and
enzymatic methods (pp 531–543).
Table 1 shows that the new heterobicyclic inhibitors de-
rived from scaffolds 3 and 4 provide low nanomolar
inhibitors of human cathepsin K and have the potential,
when substituted with appropriate binding elements, to
inhibit other CAC1 proteinases.5 For the cathepsin K
inhibitors disclosed, the d-methylene (33) to d-oxygen
(15) modification has given an approximately 8-fold loss
in potency. However, the d-methylene (34) to d-nitrogen
(32) modification has given an across the board increase
in potency ranging from approximately 3-fold for
cathepsin K to 14-fold for Leishmania mexicana CPB
and greater than 80-fold for cathepsin B. The inhibition
kinetics for inhibitor 32 are fully reversible against each
proteinase. One possible inference for this universal in-
crease in potency is that the design process detailed here-
in
for
restricting
rotational
(and
therefore
conformational) freedom about the CO–N tertiary
amide bond has, in the case of inhibitor 32 been success-
ful. However, inferences of binding modes based solely
upon changes in potency are an over simplification.
The introduction of the d-heteroatom into scaffold 2
may induce numerous effects such as changes in ring
geometry and puckering of the bicyclic framework,
any of which may influence presentation of the electro-
philic ketone to the active site thiol and alter potency.
13. Data for intermediate 11: TLC (single spot, Rf = 0.35,
EtOAc–hexane 2:3). Anal. Calcd for C18H24N2O5: C,
62.05; H, 6.94; N, 8.04, found C, 62.18; H, 7.05; N, 7.90.
Exact mass calcd for C18H24N2O5 (MNa+): 371.1583,
22
found 371.1590 (d +1.83 ppm); ½aꢂD ꢁ42.4 (c 0.663,
CHCl3).
14. Data for ketone 6: TLC (single spot, Rf = 0.30, EtOAc–
heptane 2:3). Exact mass calcd for C25H26N2O6 (MNa+):
22
473.1689, found 473.1690 (+0.24 ppm); ½aꢂD ꢁ92.4 (c
0.224, CHCl3). dH (300 K, 500 MHz, CDCl3) mixture of
rotamers major:minor 1.5:1, 1.48 (s, C(CH3)3, 5.4H), 1.50
(s, C(CH3)3, 3.6H), 3.49–3.58 (m, BocNCHCH2, 1H),
In summary, a restricted rotation design process applied
to cis-5,5-bicyclic scaffold 2 indicated that new heterobi-