Dipeptides as Effective Prodrugs
Journal of Medicinal Chemistry, 2005, Vol. 48, No. 16 5317
2.60 (1H, bs), 2.30-1.70 (8H, m), 1.43 (9H, s), 0.99-0.90 (6H,
) 7.1 Hz, 1 H), 2.48 (dd, J ) 6.6, 2.9 Hz, 1 H), 2.32 (dd,, J )
13.5, 8.4 Hz, 1 H), 2.20-2.08 (m, 1 H), 2.01-1.90 (m, 2 H),
1.61 (t, J ) 2.9 Hz, 1 H), 1.51 (d, J ) 7.0 Hz, 3 H), 1.48-1.33
(m, 1 H). 13C NMR (CD3OD) δ: 176.9 (2 C), 171.1, 68.0, 50.1,
35.9, 33.2, 29.7, 27.3, 22.5, 17.6.
t
m). MS m/z: 327 [M + H - CO2 Bu].
Compound 11d was deprotected following general procedure
1
D to provide 12d‚HCl as a white solid (71% yield). H NMR
(CD3OD) δ: 3.62 (1H, t, 7.2 Hz), 3.02 (1H, t), 2.18 (1H, dd, 2.3
Hz, 6.4 Hz), 2.04-1.91 (1H, m), 1.90-0.80 (7H, m), 0.68 (6H,
2 × t, 6.7 Hz, 6.8 Hz). MS m/z: 299 [M + H].
A solution of 12a (1.07 g, 3.00 mmol), methanesulfonic acid
(0.584 mL, 9.00 mmol), and dioxane (10 mL) was stirred for
48 h. The mixture was filtered and dried to afford 12a‚HSO3-
Me as a crude, white, amorphous solid (1.05 g). A sample of
this solid (1.0 g) was dissolved in MeOH (10 mL). The solution
was concentrated to 3.3 g total weight, and seed crystals were
added. Ethyl acetate (10 mL) was then added to the mixture
over a period of 15 min. The mixture was stirred for 30 min,
filtered, and dried under vacuum to afford 830 mg of the title
(1S,2S,5R,6S)-2-[(2′S)-(2′-Amino)-3′-phenylpropionyl]amino-
bicyclo[3.1.0]hexane-2,6-dicarboxylic Acid Hydrochlo-
ride (12e‚HCl). (1S,2S,5R,6S)-2-[(2′S)-(2′-tert-Butoxycar-
bonylamino)-3′-phenylpropionyl]aminobicyclo[3.1.0]-
hexane-2,6-dicarboxylic Acid Dimethyl Ester (11e). The
reaction of 5 with N-Boc-L-phenylalanine following general
procedure A provided 11e as a foamy white solid (87% yield):
1
mp 60-61 °C. [R]25 -2° (c 1.0, CHCl3). H NMR (CDCl3) δ:
1
compound as a white, crystalline solid (78% yield). H NMR
D
7.33-7.21 (m, 5H), 6.64 (bs, 1H), 5.13 (brd, 1H, J ) 6.9 Hz),
4.32 (q, 1H, J ) 7.0 Hz), 3.72 (s, 3H), 3.66 (s, 3H), 3.03 (d, 2H,
J ) 7.1 Hz), 2.48-2.38 (m, 2H), 2.08-1.84 (m, 3H), 1.60 (t,
1H, J ) 2.9 Hz), 1.41 (s, 9H), 1.14-1.02 (m, 1H). 13C NMR
(CDCl3) δ: 172.5, 172.4, 171.3, 155.4, 136.8, 129.4, 128.5, 126.7,
80.1, 66.1, 55.3, 52.5, 51.7, 38.1, 34.1, 31.7, 28.2, 28.0, 26.3,
20.9.
(CD3OD) δ: 3.96 (q, J ) 7.1 Hz, 1 H), 2.71 (s, 3 H), 2.45 (dd,
J ) 6.4, 2.7 Hz, 1 H), 2.38 (dd, J ) 13.9, 8.4 Hz, 1 H), 2.20-
2.08 (m, 1 H), 2.01-1.93 (m, 2 H), 1.67 (t, J ) 2.9 Hz, 1 H),
1.52 (d, J ) 7.0 Hz, 3 H), 1.46-1.35 (m, 1 H). 13C NMR (CD3-
OD) δ: 176.3, 175.7, 171.2, 67.4, 50.0, 39.5, 35.7, 33.1, 29.5,
27.4, 22.2, 17.6. Anal. (C12H20N2O8S) C, H, N.
(1S,2S,5R,6S)-2-[(2′R)-(2′-Amino)propionyl]aminobi-
cyclo[3.1.0]hexane-2,6-dicarboxylic Acid Hydrochloride
(12b‚HCl).(1S,2S,5R,6S)-2-[(2′R)-tert-Butoxycarbonylamino)-
propionyl]aminobicyclo[3.1.0]hexane-2,6-dicarboxylic
Acid Dimethyl Ester (11b). The reaction of 5 with N-Boc-
D-alanine following general procedure A provided 11b as a
Compound 11e was deprotected following general procedure
D to provide 12e‚HCl as a white solid (44% yield): mp 122-
123 °C. [R]25 -2° (c 1.0, MeOH). 1H NMR (methanol-d4) δ:
D
7.41-7.26 (m, 5H), 4.13 (dd, 1H, J ) 7.6, 6.1 Hz), 3.28 (dd,
1H, J ) 14.2, 6.2 Hz), 3.07 (dd, 1H, J ) 14.2, 7.6 Hz), 2.55
(dd, 1H, J ) 6.4, 2.8 Hz), 2.31-1.89 (m, 4H), 1.64 (t, 1H, J )
2.8 Hz), 1.35 (m, 1H). 13C NMR (methanol-d4) δ: 178.8, 178.3,
172.2, 137.9, 133.2, 132.6, 131.3, 70.0, 57.9, 41.0, 37.7, 35.4,
32.3, 29.4, 24.7.
1
foamy white solid (93% yield). H NMR (CDCl3) δ: 7.03 (s, 1
H), 5.00 (s, 1 H), 4.12 (br m, 1 H), 3.72 (s, 3 H), 3.64 (s, 3 H),
2.52 (dd, J ) 14.0, 8.5 Hz, 1 H), 2.39 (dd, J ) 6.5, 3.0 Hz, 1
H), 2.18-2.10 (m, 1 H), 2.01 (app. quintet, J ) 3.5 Hz, 1 H),
1.94 (dd, J ) 13.5, 8.0 Hz, 1 H), 1.67 (t, J ) 3.0 Hz, 1 H), 1.44
(s, 9 H), 1.31 (d, J ) 7.0 Hz, 3 H), 1.24-1.17 (m, 1 H). 13C
NMR (CDCl3) δ: 172.8, 172.7, 172.6, 155.7, 80.2, 66.1, 52.7,
51.8, 49.6, 34.4, 32.0, 28.2, 28.1, 26.6, 21.0, 17.4.
(1S,2S,5R,6S)-2-[(2′S)-(2′-Amino)-3′-methylbutyryl]amino-
bicyclo[3.1.0]hexane-2,6-dicarboxylic Acid Hydrochlo-
ride (12f‚HCl). (1S,2S,5R,6S)-2-[(2′S)-(2′-tert-Butoxycar-
bonylamino)-3′-methylbutyryl]aminobicyclo[3.1.0]hexane-
2,6-dicarboxylic Acid Dimethyl Ester (11f). The reaction
of 5 with N-Boc-L-valine following general procedure A pro-
Compound 11b was deprotected following general procedure
1
D to provide 12b‚HCl as a white solid (80% yield). H NMR
vided 11f as a foamy white solid (87% yield): mp 63-65 °C.
(CD3OD) δ: 3.92 (q, J ) 7.1 Hz, 1 H), 2.56 (dd, J ) 6.4, 2.7
Hz, 1 H), 2.25 (J ) 14.0, 8.5 Hz, 1 H), 2.13-2.06 (m, 1 H),
2.01 (m, 1 H), 1.95 (dd, J ) 12.8, 8.0 Hz, 1 H), 1.62 (t, J ) 3.0
Hz, 1 H), 1.51 (d, J ) 6.9 Hz, 3 H), 1.43-1.37 (m, 1 H). 13C
NMR (CD3OD) δ: 176.4, 175.7, 171.2, 67.3, 50.0, 35.5, 32.8,
30.0, 26.7, 21.9, 17.7.
1
[R]25 -1° (c 1.16, CHCl3). H NMR (CDCl3) δ: 6.75 (bs, 1H),
D
5.06 (bd, 1H, J ) 8.8 Hz), 3.90 (dd, 1H, J ) 8.9, 8.8 Hz), 3.73
(s, 3H), 3.66 (s, 3H), 2.54 (dd, 1H, J ) 13.8, 8.3 Hz), 2.41 (dd,
1H, J ) 5.9, 2.4 Hz), 2.23-1.88 (m, 4H), 1.71 (t, 1H, J ) 2.9
Hz), 1.44 (s, 9H), 1.30-1.19 (m, 1H), 0.97 (d, 3H, J ) 6.8 Hz),
0.93 (d, 3H, J ) 6.8 Hz). 13C NMR (CDCl3) δ: 172.5, 172.4,
171.8, 155.8, 79.8, 66.2, 59.3, 52.4, 51.7, 34.3, 31.9, 30.9, 28.2,
27.9, 26.5, 21.1, 18.9, 17.6.
(1S,2S,5R,6S)-2-[(2′S)-(2′-Amino-4′-methyl)pentanoyl]-
aminobicyclo[3.1.0]hexane-2,6-dicarboxylic Acid Hydro-
chloride (12c‚HCl). (1S,2S,5R,6S)-2-[(2′S)-(2′-tert-Butoxy-
carbonylamino-4′-methyl)pentanoyl]aminobicyclo[3.1.0]-
hexane-2,6-dicarboxylic Acid Dimethyl Ester (11c). The
reaction of 5 with N-Boc-L-leucine following general procedure
Compound 11f was deprotected following general procedure
E to provide 12f‚HCl as a white solid (64% yield): mp 217-
219 °C. [R]25D + 6° (c 0.86, MeOH). 1H NMR (D2O) δ: 3.78 (d,
1H, J ) 5.8 Hz), 2.56 (dd, 1H, J ) 6.9, 2.9 Hz), 2.19-1.95 (m,
5H), 1.66 (t, 1H, J ) 3.0 Hz), 1.50 (m, 1H), 0.99 (d, 3H, J )
6.9 Hz), 0.98 (d, 3H, J ) 6.9 Hz). 13C NMR (D2O + methanol-
d4) δ: 177.0, 176.0, 169.3, 66.3, 58.1, 34.0, 31.3, 30.0, 29.5,
25.1, 20.9, 17.3, 16.9.
A provided 11c as a foamy white solid (95% yield): mp 62-63
1
°C. [R]25 -27° (c 1.0, CHCl3). H NMR (CDCl3) δ: 7.00 (bs,
D
1H), 4.97 (bd, 1H, J ) 8.4), 4.05 (m, 1H), 3.69 (s, 3H), 3.62 (s,
3H), 2.40 (m, 2H), 2.08-1.84 (m, 3H), 1.67-1.58 (m, 3H), 1.41
(m, 1H), 1.41 (s, 9H), 1.22 (m, 1H), 0.90 (d, 3H, J ) 6.2 Hz),
0.89 (d, 3H, J ) 6.1 Hz). 13C NMR (CDCl3) δ: 172.8, 172.6,
172.5, 155.8, 80.0, 66.2, 52.5, 51.7, 40.7, 34.3, 31.9, 28.2, 28.1,
26.4, 24.6, 22.7, 22.0, 21.0.
(1S,2S,5R,6S)-2-(2-Aminoacetylamino)bicyclo[3.1.0]-
hexane-2,6-dicarboxylic Acid (12 g). (1S,2S,5R,6S)-2-[(2-
tert-Butoxycarbonylaminoacetylamino)bicyclo[3.1.0]-
hexane-2,6-dicarboxylic Acid Dimethyl Ester (11g). The
reaction of 5 with N-Boc-glycine following general procedure
Compound 11c was deprotected following general procedure
1
D to provide 12c‚HCl as a white solid (48% yield): mp 135-
A provided 11g as a foamy white solid (88% yield). H NMR
1
137 °C. [R]25 +0.3° (c 1.0, MeOH). H NMR (methanol-d4) δ:
(CDCl3) δ: 7.01 (bs, 1 H), 5.28 (bs, 1 H), 3.75 (d, J ) 5.6 Hz,
2 H), 3.72 (s, 3 H), 3.63 (s, 3 H), 2.54-2.38 (m, 2 H), 2.15-
1.87 (m, 3 H), 1.68 (t, J ) 2.9 Hz, 1 H), 1.43 (s, 9 H), 1.31-
1.11 (m, 1 H).
D
3.84 (bt, 1H, J ) 6.6 Hz), 2.52 (dd, 1H, J ) 6.2, 2.8 Hz), 2.31
(dd, 1H, J ) 13.5, 8.6 Hz), 2.21-1.89 (m, 3H), 1.74-1.59 (m,
4H), 1.44 (m, 1H), 1.02 (d, 3H, J ) 6.4 Hz), 0.99 (d, 3H, J )
6.2 Hz). 13C NMR (methanol-d4) δ: 175.3, 174.9, 169.7, 66.6,
51.8, 40.6, 34.4, 32.0, 28.7, 26.1, 24.4, 21.8, 21.5, 21.3.
Compound 11g was deprotected following general procedure
D to provide 12g‚HCl as a white solid (64% yield). Further
purification of the chlorohydrate with a C8 reverse-phase
support, eluting with MeOH/H2O, provided, after drying, the
(1S,2S,5R,6S)-2-[(2′R)-Amino-4′-methyl)pentanoyl]amino-
bicyclo[3.1.0]hexane-2,6-dicarboxylic Acid Hydrochlo-
ride (12d‚HCl). (1S,2S,5R,6S)-2-[2′R-tert-Butoxycarbonyl-
amino-4′-methyl)pentanoyl]aminobicyclo[3.1.0]hexane-2,6-
dicarboxylic Acid Dimethyl Ester (11d). The reaction of 5
with N-Boc-D-leucine following general procedure A provided
zwitterion 12g as a white solid (44% yield): mp 149-156 °C.
1
[R]25 -6° (c 1, MeOH). H NMR (MeOH-d4) δ: 3.68 (s, 2 H),
D
2.37 (dd, J ) 6.2, 3.0 Hz, 1 H), 2.19-2.08 (m, 1 H), 2.01-1.85
(m, 3 H), 1.59 (t, J ) 2.7 Hz, 1 H), 1.37-1.21 (m, 1 H).
(1S,2S,5R,6S)-2-[(2′S)-(2′-Amino)-(4′-methylthio)butyryl]-
aminobicyclo[3.1.0]hexane-2,6-dicarboxylic Acid (12h).
1
11d as a foamy white solid (88% yield). H NMR (CD3OD) δ:
7.92 (1H, bs), 4.57-4.48 (1H, m), 3.75 (3H, s), 3.70 (3H, s),