A. K. Ghosh et al. / Bioorg. Med. Chem. Lett. 15 (2005) 15–20
19
and APP with Swedish mutations.20 A structure-based
design strategy may aid the design of inhibitors with
enhanced selectivity over memapsin 1. We have also
examined cellular inhibition of memapsin 2 by 2c in
Chinese hamster cells. It has shown an average cellular
IC50 value of 3.9 1.2lM (n = 2) compared to IC50
value of 45 5lM for OM-99-2 (Ki = 1.2nM).21
Walker, D. E.; Davis, D.; Thorsett, E. D.; Jewett, N. E.;
Moon, J. B.; Varghese, J. J. Med. Chem. 2004, 47, 158.
8. (a) Ermolieff, J.; Loy, J. A.; Koelsch, G.; Tang, J.
Biochemistry 2000, 39, 12450; (b) Turner, R.; Koelsch,
G.; Hong, L.; Castenheira, P.; Ghosh, A. K.; Tang, J.
Biochemistry 2001, 40, 10001.
9. Hong, L.; Koelsch, G.; Lin, X.; Wu, S.; Terzyan, S.;
Ghosh, A. K.; Zhang, X. C.; Tang, J. Science 2000, 290,
150.
In conclusion, structure-based design of cycloamide–
urethane functionality at P2–P3 resulted in a novel series
of memapsin 2 inhibitors. These cyclic ligands are de-
signed to allow effective hydrogen bonding with specific
residues in the S2-active site. Interestingly, 16-membered
mono-unsaturated and saturated inhibitors (3c and 2c)
are the most potent inhibitors. A preliminary inhibitor-
bound mempasin 2 structure of 2c indicated that the
asparagine carbonyl of 2c is within hydrogen bonding
distance to the Arg-235 of memapsin 2. This interaction
is apparent in the X-ray structure of OM-99-2-bound
memapsin 2. Further investigations including specific
nonpeptidal ligand design from these preliminary stud-
ies are currently underway.
10. Grubbs, R. H.; Chang, S. Tetrahedron 1998, 54,
4413.
11. Ghosh, A. K.; Swanson, L. M.; Hussain, K. A.; Cho, H.;
Walters, D. E.; Holland, L.; Buthod, J. Bioorg. Med.
Chem. Lett. 2002, 12, 1993.
12. Available from Aldrich Chemical Co., Milwaukee, WI.
13. N,N0-Disuccinimidyl carbonate promoted alkoxycarbonyl-
ation protocols also provided similar results, see: (a)
Ghosh, A. K.; Duong, T. T.; McKee, S. P. Tetrahedron
Lett. 1991, 32, 4251; (b) Ghosh, A. K.; Duong, T. T.;
McKee, S. P.; Thompson, W. J. Tetrahedron Lett. 1992,
33, 2781.
14. Chatterjee, A. K.; Morgan, J. P.; Scholl, M.; Grubbs, R.
H. J. Am. Chem. Soc. 2000, 122, 3783, and references cited
therein.
15. Olefin metathesis typically provided a 4:1 mixture of trans/
cis isomers for 14- to 16-membered rings. The cis/trans
mixture has been separated by silica gel chromatography
using 25% ethyl acetate and hexanes as the eluent. The
olefin geometry of the major trans-isomers was established
by extensive decoupling experiments. The coupling con-
stants of the olefinic protons (Jab = 15–16Hz) indicated
that the trans-cycloamides are formed.
Acknowledgements
Financial support by the National Institutes of Health
(AG 18933) is gratefully acknowledged. J.T. is the
holder of the J.G. Puterbaugh Chair in Biomedical Re-
search at the Oklahoma Medical Research Foundation.
The authors thank Mr. Debasis Manna for experimental
assistance.
16. Memapsin 2 inhibition was measured using recombinant
enzyme produced from E. coli expression as described
in Ref. 5a. A fluorogenic substrate Arg-Glu (EDANS)-
Glu-Val-Asn-Leu-Asp-Ala-Glu-Phe-Lys
(Dabcyl)-Arg
was used with 0.47lM of the enzyme in 0.1M Na-
acetate + 5% dimethylsulfoxide, pH4.5 at 37°C. The
excitation wavelength was 350nm and the emission
wavelength was 490nm. Details of this assay will be
published in due course.
References and notes
1. (a) Selkoe, D. J. Nature 1999, 399A, 23; (b) Selkoe, D.
Physiol. Rev. 2001, 81, 741.
2. Vassar, R.; Citron, M. Neuron 2000, 27, 419.
3. (a) Roggo, A. Curr. Top. Med. Chem. 2002, 2, 359; (b)
Olson, R. E.; Thompson, L. A. Ann. Rep. Med. Chem.
2000, 35, 31.
17. The protein–ligand X-ray structure of 2c-bound memapsin
2 has been deposited in PDB with the access code: 1XS7.
Memapsin 2/inhibitor 2c crystal was soaked in the mother
liquor plus 20% (v/v) glycerol and quickly frozen under a
cryogenic nitrogen gas stream. Diffraction data of a single
crystal was recorded on a Mar 345 image plate mounted
on a MSC-Rigaku RU-300 X-ray generator with Osmic
focusing mirrors. Data were integrated and merged using
previously described protocols.9,16 The crystal form was
4. Vassar, R.; Bennett, B. D.; Babu-Khan, S.; Kahn, S.;
Mendiaz, E. A.; Denis, P.; Teplow, D. B.; Ross, S.;
Amarante, P.; Loeloff, R.; Luo, Y.; Fisher, S.; Fuller, J.;
Edenson, S.; Lile, J.; Jarosinski, M. A.; Biere, A. L.;
Curran, E.; Burgess, T.; Louis, J. C.; Collins, F.; Treanor,
J.; Rogers, G.; Citron, M. Science 1999, 286, 735.
5. (a) Lin, X.; Koelsch, G.; Wu, S.; Downs, D.; Dashti, A.;
Tang, J. Proc. Natl. Acad. Sci. U.S.A. 2000, 97, 1456; (b)
Sinha, S.; Lieberburg, I. Proc. Natl. Acad. Sci. U.S.A.
1999, 96, 11049.
6. (a) Ghosh, A. K.; Shin, D.; Downs, D.; Koelsch, G.; Lin,
X.; Ermolieff, J.; Tang, J. J. Am. Chem. Soc. 2000, 122,
3522; (b) Ghosh, A. K.; Bilcer, G.; Harwood, C.;
Kawahama, R.; Shin, D.; Downs, D.; Hussain, K. A.;
Hong, L.; Loy, J. A.; Nguyen, C.; Koelsch, G.; Ermolieff,
J.; Tang, J. J. Med. Chem. 2001, 44, 2865.
7. (a) Shuto, D.; Kasai, S.; Kimura, T.; Liu, P.; Koushi, H.;
Takashi, H.; Shibakawa, S.; Hayashi, Y.; Hattori, C.;
Sazbo, B.; Isiura, S.; Kiso, Y. Bioorg. Med. Chem. Lett.
2003, 13, 4273; (b) Tung, J. S.; Davis, D. L.; Anderson, J.
P.; Walker, D. E.; Mamo, S.; Jewett, N. E.; Hom, R. K.;
Sinha, S. J. Med. Chem. 2002, 45, 259; (c) Hom, R. K.;
Gailunas, A. F.; Mamo, S.; Fang, L. Y.; Tung, J. S.;
˚
determined to be monoclinic with a resolution of 2.8A.
The unit cell parameters are a = 85.8, b = 87.8, c = 130.6,
b = 89.8°.
The structure was determined by molecular replacement
implemented with the program AmoRe using the previ-
ously determined memapsin 2 structure (PDB ID: 1M4H)
as a search model.18 Rotation and translation functions
followed by the rigid-body refinement with data from 15
˚
to 3.5A resolution in space group P21 gave unambiguous
solutions for the four memapsin 2 molecules in the
asymmetric unit. A random selection of 8% of reflections
was set aside as the test set for cross-validation during the
refinement. The refined model has well defined electron
density for the inhibitor and its corresponding structure
was built into the active site. The four molecules in the
crystallographic asymmetric unit have essentially identical
structures.
18. Hong, L.; Turner, R. T., III; Koelsch, G.; Shin, D.;
Ghosh, A. K.; Tang, J. Biochemistry 2002, 41, 10963.