C. A. Burnett et al. / Bioorg. Med. Chem. 13 (2005) 3763–3771
3769
J = 8.6 Hz, 2H), 7.36 (t, J = 5.9 Hz, 1H), 6.96 (br, 1H),
6.92 (d, J = 8.6 Hz, 2H), 6.90 (t, J = 5.8 Hz, 1H), 4.04
(t, J = 5.3 Hz, 2H), 3.91 (t, J = 5.5 Hz, 2H), 3.63 (m,
1H), 3.55 (m, 2H), 3.47 (m, 2H), 3.34 (br, 2H), 3.24
(br, 4H), 3.16 (m, 2H), 3.11 (m, 2H), 1.81 (m, 2H), 1.37
(s, 9H). MS (FAB, NBA): m/z 644 (100, [M+H]+). HR-
2H), 3.26 (br, 4H), 3.17 (m, 2H), 2.70 (br, 2H), 1.82
(m, 2H), 0.94 (s, 6H). MS (FAB, NBA): m/z 586 (100,
[M+H]+). HR-MS (FAB, NBA): m/z 586.2657
([M+H]+, C24H40N7O8S, calcd 586.2659).
4.4.2. 4-[2-(3,4,5,6-Tetrahydropyrimidin-2-ylamino)ethyl-
oxy]benzoyl-2-(S)-[N-(2-amino-ethyl-1-carbamyl)]-amino-
ethylsulfonylamino-b-alanine hydrochloride (6b). 1H
NMR (300 MHz, DMSO-d6): 12.97 (br, 1H), 8.50 (br,
1H), 8.06 (br, 2H), 7.97 (br, 2H), 7.90 (br, 1H), 7.84
(d, J = 8.7 Hz, 2H), 7.59 (t, J = 5.5 Hz, 1H), 7.21 (t,
J = 5.0 Hz, 1H), 7.02 (d, J = 8.7 Hz, 2H), 4.14 (br,
2H), 4.12 (br, 2H), 3.70 (m, 1H), 3.53 (m, 2H), 3.51
(br, 2H), 3.49 (m, 2H), 3.26 (br, 4H), 3.17 (m, 2H),
3.03 (m, 2H), 1.82 (m, 2H). MS (FAB, NBA): m/z 544
(100, [M+H]+). HR-MS (FAB, NBA): m/z 544.2187
([M+H]+, C21H34N7O8S, calcd 544.2189).
MS
C26H42N7O10S, calcd 644.2714).
(FAB,
NBA):
m/z
644.2716
([M+H]+,
4.3.3. 4-[2-(3,4,5,6-Tetrahydropyrimidin-2-ylamino)ethyl-
oxy]benzoyl-2-(S)-[N-(3-butyloxycarbonylamino-propyl-
1-carbamyl)]-aminoethylsulfonylamino-b-alanine
(5c).
Off-white powder. Yield 36%. IR (KBr, cmꢀ1) 3380s,
2976m, 2928m, 2881w, 1687m, 1647s, 1607s, 1504s,
1367m, 1255s, 1178m, 1054w. 1H NMR (300 MHz,
DMSO-d6): 9.07 (br, 1H), 8.67 (br, 2H), 8.28 (br, 1H),
7.72 (d, J = 8.6 Hz, 2H), 7.34 (t, J = 5.3 Hz, 1H), 7.01
(br, 1H), 6.90 (d, J = 8.6 Hz, 2H), 6.85 (t, J = 5.5 Hz,
1H), 4.02 (t, J = 4.6 Hz, 2H), 3.92 (t, J = 6.2 Hz, 2H),
3.67 (m, 1H), 3.55 (m, 2H), 3.47 (m, 2H), 3.34 (br,
2H), 3.23 (br, 4H), 3.18 (m, 2H), 2.96 (m, 2H), 1.80
(m, 2H), 1.63 (m, 2H), 1.37 (s, 9H). 13C NMR
(75 MHz, DMSO-d6): 173.7, 165.7, 160.7, 156.6, 156.0,
153.7, 129.2, 127.7, 114.5, 78.0, 66.5, 62.3, 56.7, 51.6,
43.5, 38.4, 37.3, 35.9, 29.7, 28.7, 20.2 (21 of 22 reso-
nances observed). MS (FAB, NBA): m/z 658 (100,
[M+H]+). HR-MS (FAB, NBA): m/z 658.2872
([M+H]+, C27H44N7O10S, calcd 658.2870).
4.4.3. 4-[2-(3,4,5,6-Tetrahydropyrimidin-2-ylamino)ethyl-
oxy]benzoyl-2-(S)-[N-(3-amino-propyl-1-carbamyl)]-amino-
ethylsulfonylamino-b-alanine hydrochloride (6c). 1H
NMR (300 MHz, DMSO-d6): 12.96 (br, 1H), 8.50 (br,
1H), 7.95 (br, 2H), 7.91 (br, 2H), 7.87 (br, 1H), 7.83
(d, J = 8.6 Hz, 2H), 7.57 (t, J = 5.1 Hz, 1H), 7.29 (t,
J = 4.9 Hz, 1H), 7.02 (d, J = 8.6 Hz, 2H), 4.12 (t,
J = 4.7 Hz, 2H), 4.01 (t, J = 5.5 Hz, 2H), 3.70 (m, 1H),
3.55 (m, 2H), 3.50 (br, 2H), 3.48 (m, 2H), 3.26 (br,
4H), 3.15 (m, 2H), 2.84 (m, 2H), 1.84 (m, 2H), 1.82
(m, 2H). MS (FAB, NBA): m/z 558 (100, [M+H]+).
HR-MS (FAB, NBA): m/z 558.2344 ([M+H]+,
C22H36N7O8S, calcd 558.2346).
4.3.4. 4-[2-(3,4,5,6-Tetrahydropyrimidin-2-ylamino)ethyl-
oxy]benzoyl-2-(S)-[N-(4-butyloxycarbonylamino-butyl-1-
carbamyl)]-aminoethylsulfonylamino-b-alanine (5d). Off-
white powder. Yield 33%. IR (KBr, cmꢀ1) 3380s,
3051w, 2975m, 2935m, 2874m, 1687m, 1647s, 1607s,
1504s, 1366m, 1255s, 1148m, 1055m. 1H NMR
(300 MHz, DMSO-d6): 9.06 (br, 1H), 8.66 (br, 2H),
8.28 (br, 1H), 7.72 (d, J = 8.2 Hz, 2H), 7.33 (t,
J = 5.1 Hz, 1H), 6.98 (br, 1H), 6.90 (d, J = 8.2 Hz,
2H), 6.83 (t, J = 5.5 Hz, 1H), 4.02 (t, J = 4.7 Hz, 2H),
3.91 (t, J = 5.9 Hz, 2H), 3.66 (m, 1H), 3.55 (m, 2H),
3.46 (m, 2H), 3.41 (br, 2H), 3.23 (br, 4H), 3.18 (m,
2H), 2.90 (m, 2H), 1.80 (m, 2H), 1.49 (m, 2H), 1.47
(m, 2H), 1.36 (s, 9H). MS (FAB, NBA): m/z 672 (100,
[M+H]+). HR-MS (FAB, NBA): m/z 672.3029
([M+H]+, C28H46N7O10S, calcd 672.3027).
4.4.4. 4-[2-(3,4,5,6-Tetrahydropyrimidin-2-ylamino)ethyl-
oxy]benzoyl-2-(S)-[N-(4-amino-butyl-1-carbamyl)]-amino-
ethylsulfonylamino-b-alanine hydrochloride (6d). 1H
NMR (300 MHz, DMSO-d6): 12.96 (br, 1H), 8.50 (br,
1H), 8.02 (br, 2H), 7.95 (br, 2H), 7.88 (br, 1H), 7.84
(d, J = 8.6 Hz, 2H), 7.63 (t, J = 5.7 Hz, 1H), 7.22 (t,
J = 5.3 Hz, 1H), 7.01 (d, J = 8.6 Hz, 2H), 4.12 (br,
2H), 3.95 (br, 2H), 3.68 (m, 1H), 3.54 (m, 2H), 3.51
(br, 2H), 3.48 (m, 2H), 3.26 (br, 4H), 3.15 (m, 2H),
2.79 (m, 2H), 1.81 (m, 2H), 1.66 (m, 2H), 1.61 (m,
2H). MS (FAB, NBA): m/z 572 (100, [M+H]+). HR-
MS (FAB,
C23H38N7O8S, calcd 572.2502).
NBA): m/z 572.2507 ([M+H]+,
4.4. Representative procedure for deprotection of butyl-
oxycarbonyl integrin antagonists
4.5. 4-[2-(3,4,5,6-Tetrahydropyrimidin-2-ylamino)ethyl-
oxy]benzoyl-2-(S)-[N-(3-amino-neopenta-1-carbamyl)]-
aminoethylsulfonylamino-b-alanine fluorescein thiourea
(7)
4.4.1. 4-[2-(3,4,5,6-Tetrahydropyrimidin-2-ylamino)ethyl-
oxy]benzoyl-2-(S)-[N-(3-amino-neopenta-1-carbamyl)]-amino-
ethylsulfonylamino-b-alanine hydrochloride (6a). A mix-
ture of 5a (0.10 g, 0.14 mmol) and 4 M HCl in dioxane
(50 mL) was stirred under argon at 0 ꢀC for 3 h. The
heterogeneous mixture was frozen at ꢀ80 ꢀC then
lyophilized to dryness to give 6a in quantitative yield
To a mixture of 6a (0.11 g, 0.17 mmol) in anhydrous
DMSO (10 mL) under argon, was added N,N-diisoprop-
ylethylamine (0.06 mL, 0.34 mmol) followed by addi-
tion of fluorescein isothiocyanate (0.07 g, 0.19 mmol).
This mixture was stirred under argon at 40 ꢀC for
18 h. Excess solvent was removed by rotary evaporation
and the remainingresidue was purified by reverse phase
HPLC (4:1 MeOH–H2O, 1 mL/min, tR 10.5 min, C18
Microsorb, Varian, Inc.). The collected fractions were
combined and excess solvent was removed by rotary
evaporation followed by high vacuum to give 7
1
as a hydrochloride salt. H NMR (300 MHz, DMSO-
d6): 12.97 (br, 1H), 8.49 (br, 1H), 7.99 (br, 2H), 7.95
(br, 2H), 7.88 (br, 1H), 7.84 (d, J = 8.3 Hz, 2H), 7.60
(t, J = 5.1 Hz, 1H), 7.40 (t, J = 5.0 Hz, 1H), 7.02 (d,
J = 8.3 Hz, 2H), 4.12 (t, J = 6.4 Hz, 2H), 3.79 (s, 2H),
3.70 (m, 1H), 3.53 (m, 2H), 3.51 (br, 2H), 3.48 (m,