Journal of Medicinal Chemistry
Article
mixture was diluted with ethyl acetate and washed with water three
times. The organic phase was evaporated in vacuum. The resulting
residue was purified by HPLC to give 9 as a dark green solid (127.3
mg, 78%); mp 78.6−81.9 °C. 1H NMR (400 MHz, CD3OD) δ 8.31−
8.22 (m, 2H), 7.94 (d, J = 7.8 Hz, 1H), 7.58−7.51 (m, 2H), 7.45 (d, J
= 7.8 Hz, 2H), 7.37 (d, J = 8.1 Hz, 1H), 7.31−7.22 (m, 2H), 7.12−
6.95 (m, 4H), 6.58 (d, J = 7.7 Hz, 1H), 4.34−4.25 (m, 1H), 4.18 (d, J
= 4.0 Hz, 2H), 4.03−3.89 (m, 4H), 3.16−2.93 (m, 2H). 13C NMR
(100 MHz, CD3OD) δ 158.96 (2 × C), 156.35, 149.07 (2 × CH),
142.82, 140.59, 138.97 (2 × CH), 127.37, 125.52, 125.02 (2 × CH),
123.93 (2 × CH), 123.91, 123.50, 119.75, 113.57, 111.00, 104.90,
101.25, 70.41, 68.83, 61.36 (2 × CH2), 58.47. HRMS (ESI+):
calculated for C27H27N4O2 [M + H]+ 439.2134, found 439.2127.
HPLC purity: 99.6%, tR = 6.1 min.
CONCLUSIONS
■
In this work, we rationally designed and synthesized a novel
series of dipicolylamine-containing cationic carbazole amphi-
philes by biomimicking CAMPs. After performing biological
activity evaluations and structural optimization, compound 16
was identified as the most promising antimicrobial candidate.
Compound 16 combined with Zn2+ (6.25−12.5 μg/mL)
showed potent broad-spectrum antibacterial activity against
both Gram-positive and Gram-negative bacteria (MICs =
0.78−3.125 μg/mL). The addition of Zn2+ greatly improved
the antibacterial activity of compound 16 against both Gram-
positive and Gram-negative bacteria, especially P. aeruginosa
ATCC9027 (MIC from >50 to 3.125 μg/mL). The mode of
action studies revealed that compound 16 combined with Zn2+
killed both Gram-positive and Gram-negative bacteria mainly
by affecting the permeability of bacterial cell membranes or
even disrupting the integrity of bacterial cell membranes.
Compound 16 combined with 12.5 μg/mL Zn2+ had very poor
hemolytic activity (HC50 > 200 μg/mL) as well as low
cytotoxicity toward mammalian cells and could avoid the
emergence of bacterial resistance in the laboratory simulation
of drug resistance development studies. More notably,
compound 16 combined with 12.5 μg/mL Zn2+ displayed
excellent in vivo efficacy in a murine keratitis model induced by
S. aureus ATCC29213 or P. aeruginosa ATCC9027, and the in
vivo efficacy of compound 16 combined with Zn2+ was superior
to that of commercial vancomycin and gatifloxacin. This work
presents a framework for the design and synthesis of a new
generation of membrane-active antimicrobials to combat
Gram-positive and Gram-negative bacterial infections.
1-(Bis(pyridin-2-ylmethyl)amino)-3-((9-methyl-9H-carbazol-4-
yl)oxy)propan-2-ol (10). 10 was prepared from 2,2′-dipicolylamine
(0.2 mL) and 2 (65.9 mg, 0.26 mmol) according to the similar
procedure for 9 to give 10 as a dark green solid (87.2 mg, 74%); mp
1
49.2−51.8 °C. H NMR (400 MHz, CDCl3) δ 8.58 (d, J = 4.1 Hz,
2H), 8.16 (d, J = 7.7 Hz, 1H), 7.65−7.56 (m, 2H), 7.46−7.32 (m,
5H), 7.20−7.11 (m, 3H), 7.02 (d, J = 8.1 Hz, 1H), 6.68 (d, J = 8.0
Hz, 1H), 5.13 (s, 2H), 4.46−4.38 (m, 1H), 4.36−4.19 (m, 2H),
4.12−4.00 (m, 3H), 3.83 (s, 3H), 3.28−3.03 (m, 2H). 13C NMR (100
MHz, CDCl3) δ 158.72 (2 × C), 155.33, 148.76 (2 × CH), 142.55,
140.28, 137.08 (2 × CH), 126.52, 124.72, 123.48 (2 × CH), 123.07,
122.45 (2 × CH), 122.15, 119.15, 111.98, 107.87, 101.64, 100.84,
70.09, 67.96, 60.33, 58.52, 50.84, 29.36. HRMS (ESI+): calculated for
C28H29N4O2 [M + H]+ 453.2291, found 453.2281. HPLC purity:
99.1%, tR = 6.1 min.
1-(Bis(pyridin-2-ylmethyl)amino)-3-((9-propyl-9H-carbazol-4-yl)-
oxy)propan-2-ol (11). 11 was synthesized from 2,2′-dipicolylamine
(0.2 mL) and 3 (93 mg, 0.33 mmol) according to the similar
procedure for 9 to provide 11 as a dark green solid (112.7 mg, 71%);
mp 53.1−54.7 °C. 1H NMR (400 MHz, CDCl3) δ 8.56 (d, J = 4.2 Hz,
2H), 8.14 (d, J = 7.7 Hz, 1H), 7.64−7.52 (m, 2H), 7.45−7.29 (m,
5H), 7.18−7.07 (m, 3H), 7.01 (d, J = 8.2 Hz, 1H), 6.65 (d, J = 8.0
Hz, 1H), 4.43−4.36 (m, 1H), 4.35−4.16 (m, 7H), 4.01 (d, J = 14.9
Hz, 2H), 3.27−2.99 (m, 2H), 1.96−1.80 (m, 2H), 0.95 (t, J = 7.4 Hz,
3H). 13C NMR (100 MHz, CDCl3) δ 158.62 (2 × C), 155.39, 148.70
(2 × CH), 142.07, 139.79, 137.15 (2 × CH), 126.40, 124.62, 123.54
(2 × CH), 123.13, 122.49 (2 × CH), 122.19, 119.03, 112.01, 108.18,
101.97, 100.66, 70.05, 67.95, 60.30 (2 × CH2), 58.53, 44.84, 22.39,
11.84. HRMS (ESI+): calculated for C30H33N4O2 [M + H]+
481.2604, found 481.2593. HPLC purity: 98.8%, tR = 5.2 min.
1-(Bis(pyridin-2-ylmethyl)amino)-3-((9-pentyl-9H-carbazol-4-yl)-
oxy)propan-2-ol (12). 12 was synthesized from 2,2′-dipicolylamine
(0.2 mL) and 4 (42.8 mg, 0.14 mmol) according to the similar
procedure for 9 to give 12 as a dark green solid (49.3 mg, 70%); mp
EXPERIMENTAL SECTION
■
General Chemistry. All commercial chemicals and solvents were
used without further purification. NMR spectra were recorded on a
JEOL 400 MHz spectrometer. Chemical shifts and coupling constants
are expressed in ppm and Hz, respectively. HPLC was carried out on
an Agilent 1260 Infinity system by using YMC-Pack C18 column
(20× 150 mm or 20× 100 mm, 5 μm, 120 Å) and gradient elution
mode. The following mobile phases were applied: buffer A: 0.1%
HCOOH in water; buffer B: 0.1% HCOOH in methanol. All final
products were purified to more than 95% purity. High-resolution mass
(HRMS) spectra were performed with a Thermo DFS mass
spectrometer.
Synthesis of Carbazole Derivatives. The synthesis of carbazole
1
derivatives 2−6, 8, and 17−18 was described previously.43
56.2−59.1 °C. H NMR (400 MHz, CDCl3) δ 8.59−8.48 (m, 2H),
8.15 (d, J = 7.7 Hz, 1H), 7.63−7.50 (m, 2H), 7.43−7.28 (m, 5H),
7.19−7.06 (m, 3H), 7.01 (d, J = 8.1 Hz, 1H), 6.65 (d, J = 7.9 Hz,
1H), 4.73 (s, 2H), 4.43−4.35 (m, 1H), 4.33−4.16 (m, 4H), 4.10−
3.98 (m, 3H), 3.29−2.98 (m, 2H), 1.92−1.76 (m, 2H), 1.40−1.28
(m, 4H), 0.87 (t, J = 7.1 Hz, 3H). 13C NMR (100 MHz, CDCl3) δ
157.90 (2 × C), 155.29, 148.38 (2 × CH), 141.98, 139.70, 137.60 (2
× CH), 126.43, 124.65, 123.87 (2 × CH), 123.09, 122.77 (2 × CH),
122.15, 119.01, 111.96, 108.16, 101.98, 100.63, 69.92, 67.73, 60.00,
58.49, 50.78, 43.28, 29.45, 28.77, 22.57, 14.06. HRMS (ESI+):
calculated for C32H37N4O2 [M + H]+ 509.2917, found 509.2911.
HPLC purity: 99.1%, tR = 7.4 min.
9-(4,4,4-Trifluorobutyl)-4-(oxiran-2-ylmethoxy)-9H-carbazole
(7). NaOH (53 mg, 0.66 mmol) and 1,1,1-trifluoro-4-iodobutane
(109 μL, 0.67 mmol) were added to a solution of 1 (100 mg, 0.42
mmol) in DMF (5 mL). The mixture was stirred for 2 h at 60 °C.
Then, the mixture was diluted with ethyl acetate and extracted with
water three times. The organic phase was concentrated under reduced
pressure. The crude product was purified by silica gel chromatography
(ethyl acetate/petroleum ether = 1/4) to give 7 as a light yellow solid
(103.2 mg, 71%); mp 75.8−78.3 °C. 1H NMR (400 MHz, CDCl3) δ
8.38 (d, J = 7.3 Hz, 1H), 7.58−7.26 (m, 4H), 7.02 (d, J = 7.7 Hz,
1H), 6.69 (d, J = 7.7 Hz, 1H), 4.53−4.21 (m, 4H), 3.71−3.37 (m,
1H), 2.96 (d, J = 43.3 Hz, 2H), 2.18−2.02 (m, 4H). 13C NMR (100
MHz, CDCl3) δ 155.24, 141.78, 139.47, 126.75, 125.56, 125.22,
123.55, 122.31, 119.69, 112.35, 107.89, 101.94, 101.31, 68.91, 50.45,
44.96, 41.86, 31.64, 21.80. HRMS (ESI+): calculated for
C19H19F3NO2 [M + H]+ 350.1368, found 350.1354. HPLC purity:
99.5%, tR = 6.4 min.
1-(Bis(pyridin-2-ylmethyl)amino)-3-((9-heptyl-9H-carbazol-4-yl)-
oxy)propan-2-ol (13). 13 was synthesized from 2,2′-dipicolylamine
(0.2 mL) and 5 (42.5 mg, 0.13 mmol) according to the similar
procedure for 9 to give 13 as a dark green solid (52.2 mg, 77%); mp
1
61.1−63.5 °C. H NMR (400 MHz, CDCl3) δ 8.60−8.46 (m, 2H),
8.15 (d, J = 7.7 Hz, 1H), 7.63−7.50 (m, 2H), 7.44−7.28 (m, 5H),
7.18−7.06 (m, 3H), 7.00 (d, J = 8.1 Hz, 1H), 6.65 (d, J = 7.9 Hz,
1H), 4.43−4.35 (m, 1H), 4.34−4.16 (m, 4H), 4.09−3.98 (m, 3H),
3.89 (s, 2H), 3.27−3.00 (m, 2H), 1.90−1.75 (m, 2H), 1.42−1.22 (m,
8H), 0.85 (t, J = 6.9 Hz, 3H). 13C NMR (100 MHz, CDCl3) δ 159.10
1-((9H-Carbazol-4-yl)oxy)-3-(bis(pyridin-2-ylmethyl)amino)-
propan-2-ol (9). 2,2′-Dipicolylamine (0.2 mL) was added to a
solution of 1 (100 mg, 0.37 mmol) in MeOH (10 mL). The mixture
was stirred at 65 °C for 6 h. After the reaction was completed, the
10439
J. Med. Chem. 2021, 64, 10429−10444