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conformation that is substantially different from the con-
formation of macrocyclic HCV PIs such as 1 and 2. Thus,
the poor activity of P3 aza-peptide analogs, including
macrocycle 3, s likely the result of conformational con-
straints due to intramolecular H-bonding preventing the
compounds from adopting the necessary extended con-
formation for tight binding to the active site of NS3
protease.
6. Llinas-Brunet, M.; Bailey, M. D.; Bolger, G.; Brochu,
C.; Faucher, A.-M.; Ferland, J. M.; Garneau, M.;
Ghiro, E.; Gorys, V.; Grand-Maitre, C.; Halmos, T.;
Lapeyre-Paquette, N.; Liard, F.; Poirer, M.; Rheaume,
M.; Tsantrizos, Y.; Lamarre, D. J. Med. Chem. 2004,
47, 1605.
In conclusion, we have modified a potent macrocyclic tri-
peptide inhibitor of HCV protease (2) by replacing the P3
alpha-carbon with nitrogen, thereby producing a P3 aza-
macrocyclic peptide analog. This structural modification
resulted in a large loss in inhibitory activity in vitro, as
aza-analog 3 was orders of magnitude less active than 2
in both the biochemical and replicon assays. It is believed
that the loss in potency is due to conformational con-
straints on these aza-analogs preventing an extended con-
formation required for tight binding to the protease active
site. Solution NMR studies of P3 aza-tripeptide HCV
protease inhibitors indicate these compounds adopt a b-
turn structure resulting from intramolecular H-bonding
between the P1 NH and N-terminal tert-butylcarbamate
at P3. Molecular modeling of an aza-peptide analog in
the b-turn conformation indicate a D-like configuration
at P3. Thus, it is believed that the increased flexibility at
the aza-center of 3 relative to the absolute configuration
of the P3 L-amino acid in 2, allowed 3 to adopt an overall
conformation that was stabilized by an intramolecular H-
bond.
7. Atazanavir is an aza-peptide HIV PI. For a recent review,
see: Perez-Elias, M. J. Expert Opin. Pharmacother. 2007, 8,
689.
8. Faucher, A.-M.; Bailey, M. D.; Beaulieu, P. L.; Brochu,
C.; Duceppe, J.-S.; Ferland, J.-M.; Ghiro, E.; Gorys, V.;
Halmos, T.; Kawai, S. H.; Poirer, M.; Simoneau, B.;
Tantrizos, Y. S.; Llinas-Brunet, M. Org. Lett. 2004, 6,
2901.
9. Tsantrizos, Y. S.; Ferland, J.-M.; McClory, A.; Poirier, M.;
Farina, V.; Yee, N. K.; Wang, X. J.; Haddad, N.; Wei, X.;
Xu, J.; Zhang, L. J. Organometal. Chem. 2006, 691, 5163.
10. For a recent review on olefin metathesis, see: Schrock, R. R.;
Hoveyda, A. H. Angew. Chem. Int. Ed. Engl. 2003, 42, 4592.
11. Tsantrizos, Y. S.; Cameron, D.; Faucher, A. -M.; Ghiro,
E.; Goudreau, N.; Halmos, T.; Llinas-Brunet, M. U.S.
Patent 6,608,027 B1, 2003.
12. Andre, F.; Vicherat, A.; Boussard, G.; Aubrey, A.;
Marraud, M. J. Peptide Res. 1997, 50, 372.
13. Andre, F.; Marraud, M.; Boussard, G. Tetr. Lett. 1996,
37, 183.
14. We have observed a strong NOE between the P1 NH and
P2 Ha in NMR spectra of non-aza tripeptide HCV PIs,
including 1 and 2. This NOE is consistent with an
extended conformation for the peptide portion of these
compounds.
Acknowledgment
15. Our model is consistent with X-ray crystal studies of aza-
Asx-Pro dipeptides that reveal a b-turn structure in which
the aza-residue exhibits a D-like chirality.13
The authors thank Kent Stewart for his help in generat-
ing molecular models of compounds 9 and 10.
16. For assay procedures, see: Lu, L.; Pilot-Matias, T. J.;
Stewart, K. D.; Randolph, J. T.; Pithawalla, R.; He, W.;
Huang, P. P.; Klein, L. L.; Mo, H.; Molla, A. Antimicrob.
Agents Chemother. 2004, 48, 2260.
Supplementary data
17. The NMR spectra for 3 in both CDCl3 and DMSO-d6
were characterized by broad signals at room temperature.
It was necessary to heat the DMSO-d6 sample to 60 °C to
obtain useful NMR data for analysis.
18. Huang, P. P.; Randolph, J. T.; Flentge, C.; Klein, L. L.;
Kurtz, K.; Konstantinidis, A.; Kati, W.; Zhang, X.; Stoll,
V. S.; Kempf, D. J. 232nd ACS National Meeting, San
Francisco, CA, Sept, 2006; MEDI-176.
Experimental procedures for the synthesis of compound
3, and detailed NMR data, including 2D spectra in both
CDCl3 and DMSO-d6 for compound 9. Supplementary
data associated with this article can be found, in the on-
19. The P1 NH (Hb) and P3 NH (Ha) in 10 are clearly
observed and assigned by 2D NMR in DMSO-d6 at
60 °C, but are too broad to be assigned directly in
CDCl3. The five points titration at 0%, 5%, 10%, 20%,
and 50% DMSO in CDCl3, including variable temper-
ature (from 30o C to 80 °C) at each titration point, was
used to determine the chemical shift of P1 NH (Hb) and
P3 NH (Ha) in CDCl3.
20. Data for ethyl ester analogs are reported due to the
relative ease of obtaining quality NMR data in CDCl3
for these compounds compared to the corresponding
carboxylic acids. The NMR of 1 in CDCl3 was not
obtained.
References and notes
1. Kim, W. R. Hepatology 2002, 36, s30.
2. Cornberg, M.; Wedemeyer, H.; Manns, M. P. Curr.
Gastroenterol. Rep. 2002, 4, 23.
3. For a recent review on HCV antivirals, see: (a) Ni, Z.-J.;
Wagman, S. Curr. Opin. Drug Disc. Dev. 2004, 7, 446; Also,
see: (b) Bhopale, G. M.; Nanda, R. K. Hepatol. Res. 2005,
32, 146.
4. For a recent review of NS3-4A protease inhibitors, see: (a)
Thomson, J. A.; Perni, R. B. Curr. Opin. Drug Disc. Dev.
2006, 9, 1367; Also, see: (b) Sheldon, J.; Barreiro, P.;
Vincent, V. Expert Opin. Invest. Drugs 2007, 16, 1171.
5. Lamarre, D.; Anderson, P. C.; Bailey, M.; Beaulieu, P.;
Bolger, G.; Bonneau, P.; Boes, M.; Cameron, D. R.;
Cartier, M.; Cordingley, M. G.; Faucher, A.-M.; Goud-
21. The structures corresponding to compounds 9 (Fig. 3) and
10 (Fig. 5) were energy minimized using the CFF force
field within Insight software (Accelrys, San Diego).