Structure-SelectiVity InVestigations
Journal of Medicinal Chemistry, 2007, Vol. 50, No. 3 499
(11) Lanig, H.; Utz, W.; Gmeiner, P. Comparative molecular field analysis
of dopamine D4 receptor antagonists including 3-[4-(4-chlorophenyl)-
piperazin-1-ylmethyl]pyrazolo[1,5-a]pyridine (FAUC 113), 3-[4-(4-
chlorophenyl)piperazin-1-ylmethyl]-1H-pyrrolo-[2,3-b]pyridine (L-
745,870), and clozapine. J. Med. Chem. 2001, 44, 1151-1157.
(12) Boeckler, F.; Ohnmacht, U.; Lehmann, T.; Utz, W.; Hu¨bner, H.;
Gmeiner, P. CoMFA and CoMSIA investigations revealing novel
insights into the binding modes of dopamine D3 receptor agonists.
J. Med. Chem. 2005, 48, 2493- 2508.
(13) Salama, I.; Schlotter, K.; Utz, W.; Hu¨bner, H.; Gmeiner, P.; Boeckler,
F. CoMFA and CoMSIA investigations of dopamine D3 receptor
ligands leading to the prediction, synthesis, and evaluation of rigidized
FAUC 365 analogues. Bioorg. Med. Chem. 2006, 14, 5898-5912.
(14) Cramer, R. D., III; Patterson, D. E.; Bunce, J. D. Comparative
molecular field analysis (CoMFA). 1. Effect of shape on binding of
steroids to carrier proteins. J. Am. Chem. Soc. 1988, 110, 5959- 5967.
(15) Kubinyi, H., Ed. 3D-QSAR in Drug Design. Theory, Methods and
Applications; ESCOM: Leiden, The Netherlands, 1993.
(16) Kubinyi, H.; Folkers, G.; Martin, Y. C., Eds. 3D-QSAR in Drug
Design. Volume 2. Ligand-Protein Interactions and Molecular
Similarity; Kluwer/ESCOM: Dordrecht, The Netherlands, 1997.
(17) Kubinyi, H.; Folkers, G.; Martin, Y. C., Eds. 3D-QSAR in Drug
Design. Volume 3. Recent AdVances; Kluwer/ ESCOM: Dordrecht,
The Netherlands, 1998.
(18) Klebe, G.; Abraham, U.; Mietzner, T. Molecular similarity indices
in a comparative analysis (CoMSIA) of drug molecules to correlate
and predict their biological activity. J. Med. Chem. 1994, 37, 4130-
4146.
(19) Bo¨hm, M.; Stu¨rzebecher, J.; Klebe, G. Three-dimensional quantitative
structure-activity relationship analyses using comparative molecular
field analysis and comparative molecular similarity indices analysis
to elucidate selectivity differences of inhibitors binding to trypsin,
thrombin, and factor Xa. J. Med. Chem. 1999, 42, 458-477.
(20) Baskin, I. I.; Tikhonova, I. G.; Palyulin, V. A.; Zefirov, N. S.
Selectivity fields: Comparative molecular field analysis (CoMFA)
of the glycine/NMDA and AMPA receptors. J. Med. Chem. 2003,
46, 4063-4069.
(31) Hackling, A.; Ghosh, R.; Perachon, S.; Mann, A.; Ho¨ltje, H. D.;
Wermuth, C. G.; Schwartz, J. C.; Sippl, W.; Sokoloff, P.; Stark, H.
N-(ω-(4-(2-Methoxyphenyl)piperazin-1-yl)alkyl)carboxamides as
dopamine D2 and D3 receptor ligands. J. Med. Chem. 2003, 46,
3883-3899.
(32) De Paulis, T.; El Tayar, N.; Carrupt, P. A.; Testa, B.; Van de
Waterbeemd, H. Quantitative structure-affinity relationships of
dopamine D2 receptor antagonists: A comparison between orthop-
ramides and 6-methoxysalicylamides. HelV. Chim. Acta 1991, 74,
241-254.
(33) Cha, M. Y.; Lee, I. Y.; Cha, J. H.; Choi, K. I.; Cho, Y. S.; Koh, H.
Y.; Pae, A. N. QSAR studies on piperazinylalkylisoxazole analogues
selectively acting on dopamine D3 receptor by HQSAR and CoMFA.
Bioorg. Med. Chem. 2003, 11, 1293-1298.
(34) Bostro¨m, J.; Gundertofte, K.; Liljeforsa, T. A pharmacophore model
for dopamine D4 receptor antagonists. J. Comput.-Aided Mol. Des.
2000, 14, 769-786.
(35) Bostro¨m, J.; Bo¨hm, M.; Gundertofte, K.; Klebe, G. A 3D QSAR
study on a set of dopamine D4 receptor antagonists. J. Chem. Inf.
Comput. Sci. 2003, 43, 1020-1027.
(36) Lo¨ber, S.; Hu¨bner, H.; Gmeiner, P. Azaindole derivatives with high
affinity for the dopamine D4 receptor: Synthesis, ligand binding
studies, and comparison of molecular electrostatic potential maps.
Bioorg. Med. Chem. Lett. 1999, 9, 97-102.
(37) Lo¨ber, S.; Hu¨bner, H.; Utz, W.; Gmeiner, P. Rationally based efficacy
tuning of selective dopamine D4 receptor ligands leading to the
complete antagonist 2-[4-(4-chlorophenyl)piperazin-1-ylmethyl]pyra-
zolo[1,5-a]pyridine (FAUC 213). J. Med. Chem. 2001, 44, 2691-
2694.
(38) Lo¨ber, S.; Aboul-Fadl, T.; Hu¨bner, H.; Gmeiner, P. Di- and
trisubstituted pyrazolo[1,5-a]pyridine derivatives: Synthesis, dopam-
ine receptor binding and ligand efficacy. Bioorg. Med. Chem. Lett.
2002, 12, 633-636.
(39) Bettinetti, L.; Schlotter, K.; Hu¨bner, H.; Gmeiner, P. Interactive SAR
studies: Rational discovery of super-potent and highly selective
dopamine D3 receptor antagonists and partial agonists. J. Med. Chem.
2002, 45, 4594-4597.
(40) Bettinetti, L.; Lo¨ber, S.; Hu¨bner, H.; Gmeiner, P. Parallel synthesis
and biological screening of dopamine receptor ligands taking
advantage of a click chemistry based BAL linker. J. Comb. Chem.
2005, 7, 309-316.
(21) Yang, G.-F.; Lu, H.-T.; Xiong, Y.; Zhan, C.-G. Understanding the
structure-activity and structure-selectivity correlation of cyclic
guanine derivatives as phosphodiesterase-5 inhibitors by molecular
docking, CoMFA and CoMSIA analyses. Bioorg. Med. Chem. 2006,
14, 1462-1473.
(22) Melville, J. L.; Lovelock, K. R. J.; Wilson, C.; Allbutt, B.; Burke,
E. K.; Lygo, B.; Hirst, J. D. Exploring phase-transfer catalysis with
molecular dynamics and 3D/4D quantitative structure selectivity
relationships. J. Chem. Inf. Model. 2005, 45, 971-981.
(23) Catto, M.; Nicolotti, O.; Leonetti, F.; Carotti, A.; Favia, A. D.; Soto-
Otero, R.; Mendez-Alvarez, E.; Carotti, A. Structural insights into
monoamine oxidase inhibitory potency and selectivity of 7-substituted
coumarins from ligand- and target-based approaches. J. Med. Chem.
2006, 49, 4912-4925.
(24) Mach, R. H.; Hammond, P. S.; Huang, Y.; Yang, B.; Xu, Y.; Cheney,
J. T.; Freeman, R.; Luedtke, R. R. Structure-activity relationship
studies of N-(9-benzyl)-9-azabicyclo[3.3.1]nonan-3-â-yl benzamide
analogues for dopamine D2 and D3 receptors. Med. Chem. Res. 1999,
9, 355-373.
(25) Wilcox, R. E.; Tseng, T.; Brusniak, M. Y.; Ginsburg, B.; Pearlman,
R. S.; Teeter, M.; DuRand, C.; Starr, S.; Neve, K. A. CoMFA-based
prediction of agonist affinities at recombinant D1 vs D2 dopamine
receptors. J. Med. Chem. 1998, 41, 4385-4399.
(26) Wilcox, R. E.; Huang, W. H.; Brusniak, M. Y.; Wilcox, D. M.;
Pearlman, R. S.; Teeter, M. M.; DuRand, C. J.; Wiens, B. L.; Neve,
K. A. CoMFA-based prediction of agonist affinities at recombinant
wild type versus serine to alanine point mutated D2 dopamine
receptors. J. Med. Chem. 2000, 43, 3005-3019.
(27) Ravina, E.; Negreira, J.; Cid, J.; Masaguer, C. F.; Rosa, E.; Rivas,
M. E.; Fontenla, J. A.; Loza, M. I.; Tristan, H.; Cadavid, M. I.; Sanz,
F.; Lozoya, E.; Carotti, A.; Carrieri, A. Conformationally constrained
butyrophenones with mixed dopaminergic (D(2)) and serotoninergic
(5-HT(2A), 5- HT(2C)) affinities: Synthesis, pharmacology, 3D-
QSAR, and molecular modeling of (aminoalkyl)benzo- and thieno-
cycloalkanones as putative atypical antipsychotics. J. Med. Chem.
1999, 42, 2774-2797.
(41) Loaiza, P. R.; Lo¨ber, S.; Hu¨bner, H.; Gmeiner, P. Click chemistry
on solid phase: Parallel synthesis of N-benzyltriazole carboxamides
as super-potent G-protein coupled receptor ligands. J. Comb. Chem.
2006, 8, 252-261.
(42) Lo¨ber, S.; Hu¨bner, H.; Gmeiner, P. Synthesis and biological
investigations of dopaminergic partial agonists preferentially recog-
nizing the D4 receptor subtype. Bioorg. Med. Chem. Lett. 2006, 16,
2955-2959.
(43) Koob, G. F.; Caine, S. B. Cocaine addiction therapysare we partially
there? Nat. Med. 1999, 5, 993-995.
(44) Chavez-Eng, C. M.; Constanzer, M. L.; Matuszewski, B. K. Picogram
determination of a novel dopamine D4 receptor antagonist in human
plasma and urine by liquid chromatography with atmospheric pressure
chemical ionization tandem mass spectrometry. J. Chromatogr., B.
1997, 691, 77-85.
(45) ASP V3.22, Oxford Molecular, Ltd.: The Medawar Centre, Oxford
Science Park, Sandford-on-Thames, Oxford OX4 4GA, U.K., 1998.
(46) TSAR V3.2, Oxford Molecular, Ltd.: The Medawar Centre, Oxford
Science Park, Sandford-on-Thames, Oxford OX44GA, U.K., 1998.
(47) Wang, R.; Gao, Y.; Liu, L.; Lai, L. All-orientation search and all-
placement search in comparative molecular field analysis. J. Mol.
Model. 1998, 4, 276-283.
(48) Thibaut, U.; Folkers, G.; Klebe, G.; Kubinyi, H.; Merz, A.; Rognan,
D. Recommendations to CoMFA studies and 3D QSAR publications.
In 3D QSAR in Drug Design. Theory, Methods and Applications;
Kubinyi, H., Ed.; ESCOM: Leiden, The Netherlands, 1993; pp 711-
716.
(49) Murray, P. J.; Harrison, L. A.; Johnson, M. R.; Robertson, G. M.;
Scopes, D. I.; Bull, D. R.; Graham, E.; Hayes, A. G.; Kilpatrick, G.
J. A novel series of arylpiperazines with high affinity and selectivity
for the dopamine D3 receptor. Bioorg. Med. Chem. Lett. 1995, 5,
219-222.
(28) Norinder, U.; Hogberg, T. A quantitative structure-activity relation-
ship for some dopamine D2 antagonists of benzamide type. Acta
Pharm. Nord. 1992, 4, 73-78.
(29) McGaughey, G. B.; Mewshaw, R. E. Application of comparative
molecular field analysis to dopamine D2 partial agonists. Bioorg.
Med. Chem. 1999, 7, 2453-2456.
(30) Homan, E. J.; Tulp, M. T.; Nilsson, J. E.; Wikstro¨m, H. V.; Grol, C.
J. C5-substituted derivatives of 5-OMe-BPAT: Synthesis and interac-
tions with dopamine D2 and serotonin 5-HT1A receptors. Bioorg.
Med. Chem. 1999, 7, 2541-2548.
(50) Yuan, Y.; Chen, C.; Brodbeck, R.; Primus, R.; Braun, J.; Wasley, J.
W. F.; Thurkauf, A. NGB 2904 and NGB 2849: Two highly selective
dopamine D3 receptor antagonists. Bioorg. Med. Chem. Lett. 1998,
8, 2718-2718.
(51) Dolci, L.; Dolle´, F.; Jubeau, S.; Vaufrey, F.; Crouzel, C. 2-[18F]-
fluoropyridines by no-carrier-added nucleophilic aromatic substitution
with [18F]FK-K222sa comparative study. J. Labelled Compd. Ra-
diopharm. 1999, 42, 975-985.