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G. Chen et al. / Bioorg. Med. Chem. Lett. 23 (2013) 3942–3946
Table 1
5
Activity of selected 40-substituted-3-cyano-2-phenylindoles
i, j
CN
CN
R
a, b, c
d, e
N
O
R1O
HO
NO2
N
H
R1O
N
a
a
Compd
R
HCV replicon 1b EC50
(l
M)
CC50 (lM)
13a: R1 = Et
1 = F2HC
14a:
14b:
R
R
1 = Et
2
OMe
OH
OEt
NH2
4.1
6.1
3.0
7.7
4.0
>100
50
>100
100
52
1 = F2HC
13b:
R
7a
7b
7c
7d
7e
7f
8a
8b
8c
8d
14c: R1 = FCH2CH2
f
SOMe
SO2Me
CONH2
NHCO2Et
NHCOMe
NHCOPh
NHSO2Et
2.6
7.8
1.3
1.3
>100
0.47
42
>100
41
89
>100
62
CN
CN
g, h
NHSO2R2
B(OH)2
N
R1O
R1O
N
15a-c
O
O
24, 25a-k, 26
S
9
2.0
>50
30
∗
N
Scheme 4. Reagents and conditions: (a) HCF2Cl, NaOH (20%), dioxane, 80 °C, 80%, or
K2CO3, EtI, MEK, reflux, 99%; (b) DMF–DMA, pyrolidine, DMF, 110 °C; (c) H2, Pd/C,
EtOAc, 60 psi, rt; (d) chlorosulfonyl isocyanate, DMF, 0 °C to rt; (e) EtI, Cs2CO3, DMF,
rt; (f) (i-PrO)3B, THF, LDA, then HCl, ꢁ78 °C to rt; (g) PdCl2(dppf), K2CO3, DMF, H2O,
4-iodoaniline, rt; (h) R2SO2Cl, pyridine, CH2Cl2, 0 °C to rt; (i) BBr3, CH2Cl2, ꢁ78 °C to
rt; (j) FCH2CH2Br, NaH, DMF, 0 °C to rt.
O
O
S
12
0.90
NH
∗
N
a
See Ref. 13 for assay conditions.
with respect to cytotoxicity was maintained for these compounds,
with the sulfonamide 8d possessing a selectivity index of >130.
Cyclization of the sulfonamide functionality led to a small decrease
in activity; sultam 9 was ꢀfourfold less active than was sulfon-
amide 8d. Interestingly, compound 12, a cyclic sulfamide derived
by replacing a methylene group in 9 with an NH, led to a twofold
gain in replicon activity, demonstrating submicromolar EC50
potency.
the 6-chloromethyl derivative with thionyl chloride, followed by
treatment with morpholine (Scheme 5).
It is readily apparent that substitution with lipophilic groups on
the indole benzenoid ring is favored as the unsubstituted com-
pound 16 showed only modest activity (EC50 = 9.0
licon assay (Table 2). The 6-methoxy analog 8d is nearly 20-fold
more potent (EC50 = 0.47 M) than 16. The related 6-methoxy iso-
propanesulfonamide 8e, is nearly equipotent (EC50 = 0.65 M).
lM) in the rep-
l
l
Based on these encouraging results, we focused our efforts on
the sulfonamide series for further optimization. In order to inves-
tigate the effect of various functional groups and substitution pat-
terns on the indole benzenoid ring towards activity in the replicon
assay, we prepared a number of substituted N-(40-(1-ethylindol-2-
yl)phenyl)sulfonamide derivatives with a range of electronic, ste-
ric, and hydrophilic properties.
Moving the methoxy group to the 5-position (17) led to a more
than 10-fold loss in activity. Introducing an additional methoxy
group at the 5-position (18 vs 8d) also leads to reduced potency
against the replicon. In general, compounds containing fluorinated
substituents, for example, 23, 25a, 26, and 27, had good potencies
against the replicon (EC50 range 0.29–0.59
ity with respect to cytotoxicity (50- to 140-fold). The 5-fluoro ana-
log 20 (EC50 = 0.59 M) is much more potent than the
corresponding 5-chloro analog 19 (EC50 = 7.5 M). Introduction of
a polar carboxylic acid group at the indole 6-position (29) led to
a complete loss of activity (EC50 >11 M) while the 6-carboxamide
lM) and good selectiv-
Compounds 16–21, 23, and 27 were synthesized from the corre-
sponding commercially available indoles following the synthetic
sequence outlined in Scheme 1. Compounds 24, 25a–k, and 26
were prepared as shown in Scheme 4. The 6-ethoxyindole and 6-
difluoromethoxyindole compounds were prepared by converting
4-methyl-3-nitrophenol to 4-ethoxy-2-nitrotoluene via ethylation
and 4-difluoromethoxy-2-nitrotoluene via difluoromethylation14
with Freon 22 and NaOH in dioxane, respectively. Batcho–Leimgr-
uber indole synthesis provided the indole intermediates 13a and
13b.15 Cyanation and N-ethylation furnished 14a and 14b. The 6-
fluoroethoxyindole intermediate 14c was obtained by BBr3
demethylation of 5 followed by O-alkylation with 1-bromo-2-fluo-
roethane in the presence of NaH in DMF. Compounds 14a–c were
then converted to boronic acids 15a–c. Suzuki coupling of 15a–c
with 4-iodoaniline followed by the treatment with sulfonyl chlo-
rides furnished compounds 24, 25a–k and 26. Compound 22 was
obtained by BBr3 demethylation of 8d. The 6-carboxylic acid deriv-
ative 29 was obtained from commercially available methyl indole-
6-carboxlate using chemistry described in Scheme 5. Carboxamide
30 was obtained from 29 via the acid chloride followed by treat-
ment with ammonia. Borane reduction of 29 provided the 6-
hydroxymethyl analog 31. Methylation of 31 with methyliodide
and NaH furnished the 6-methoxymethyl analog 32. The 6-mor-
pholinomethyl derivative 33 was obtained by converting 31 to
l
l
l
30 showed only marginal activity. In general, hydrophilic groups
are not well tolerated. Compounds 31–33 containing hydroxy-
methyl, methoxymethyl and morpholinomethyl groups, respec-
tively, have only modest activity against HCV replication (EC50
range 3–5 lM).
Based on the very encouraging activity of the 6-difluorome-
thoxy derivative 25a, we targeted several additional analogs of
compound 25a for further evaluation. We prepared and evaluated
the activity of compounds bearing small alkyl groups both on the
indole nitrogen and the sulfonamide moiety. Several additional
analogs were identified as potent HCV replicon inhibitors with
EC50s <0.3 lM (Table 3). Compounds containing small lipophilic
substituents on the indole N-1 have similar potency against the
replicon, including ethyl, n-propyl, isopropyl, cyclobutyl, and
cyclopropylmethyl. These compounds contain substituents on the
sulfonamide moiety including ethyl, n-propyl, isopropyl, and
cyclopropyl. Compound 25d was selected as an advanced lead
compound considering its potential for further evaluation based
on its favorable overall profile, including potency against HCV rep-
lication (EC50 = 0.17 lM), excellent selectivity with respect to cyto-