.
Angewandte
Communications
DOI: 10.1002/anie.201303766
Hydrogen Bonding
Intramolecular OH···FC Hydrogen Bonding in Fluorinated
Carbohydrates: CHF is a Better Hydrogen Bond Acceptor than CF2**
Guy T. Giuffredi, Vꢀronique Gouverneur,* and Bruno Bernet*
Hydrogen bonds (H-bonds) are well-appreciated key inter-
actions, playing a major role in stabilizing tertiary structures
of peptides and nucleic acids, and being involved in molecular
recognition. Still, an official definition of the hydrogen bond
was only recently published by the IUPAC.[1] Fluoroorganic
compounds are widely used in materials, pharmaceuticals, and
agrochemicals, but the extent to which organofluorines can
act as hydrogen bond acceptor and how the proximal
substituents affect this interaction is still actively researched
and debated. A recent review of Schneider summarizes the
observation reflecting the high importance of H-bonding in
protein–ligand interactions. The two classes of compounds
À
À
that form X H···F C H-bonds in the solid state are fluori-
nated sterically crowded tertiary alcohols and fluorinated
polyols. The bulky substituents of the former class prevent the
formation of co-operative intermolecular OH···OH H-bonds
À
À
and favor the formation of dimers through O H···F C H-
bonds[11] or of monomers possessing an isolated intramolec-
[12]
À
À
ular O H···F C H-bond.
Fluorinated polyols have the
capacity to form both co-operative intermolecular OH···OH
H-bonds and bifurcated or tetravalent H-bonds with O- and
F-substituents as H-bond acceptors.[13]
À
À
current knowledge about X H···F C H-bonds (X = O, N, S,
and C) and describes the methods used to experimentally
identify factors influencing this weak interactions.[2] X H···F
C H-bonds are best assigned by X-ray diffraction in the solid
state, by computational methods in the gas phase, and by IR
and NMR spectroscopy in the liquid phase. They prefer to be
linear, with the bending of intramolecular H-bonds leading to
a decrease of the stabilization (e.g. 14 kJmolÀ1 for a linear[3]
Understanding the structure and properties of the
increasing number of newly designed fluorinated agents
requests a detailed investigation of the intra- and intermo-
lecular interactions of organofluoro compounds. In solution,
À
À
À
À
X H···F C H-bonds are formed in apolar environments in
the absence of stronger competing H-bond acceptors. Intra-
and 5 kJmolÀ1 for a bent O H···F H-bond in a five-membered
molecular X H···F H-bonds are observed in apolar solvents
À
À
ring[4]). The strong interest on XH···F H-bonds is evidenced
by a recent IR investigation of the intramolecular OH···F H-
bonding in fluorinated anancomeric cyclohexanols[5] and by
the detection of intermolecular XH···F (X = O or N) H-bonds
by 19F NMR spectroscopy in complexes of fluorinated agents
with enzymes.[6]
(like CDCl3 and C6D6) and are replaced in polar solvents by
intermolecular H-bonds to the solvent.[14,15]
Scalar coupling between XH and F (1hJ(XH,F[16]) in the
1
À
À
H NMR spectra is useful for the detection of X H···F C H-
bonds. The size of this coupling roughly reflects the strength
of the H···F H-bond. It decreases from 530 Hz for gaseous HF
À
À
Dunitz and Taylor with their paper titled “Organic
Fluorine Hardly Ever Makes Hydrogen Bonds” initiated an
to < 4 Hz for C H···F C H-bonds and close contacts between
[14]
À
C H and F as observed for example in 2-fluorotoluene.
[7]
[17,18]
ongoing debate about X H···F C H-bonds. This statement
is correct for the solid state where alcohols prefer to form
bands of co-operative intermolecular OH···OH H-bonds.[8]
Examination of the Cambridge Structural Database revealed
that only 0.6% of all CF groups are engaged as H-bond
Most X H···F C H-bonds (X = O,
N,[19,20] or S[18a]) show
À
À
À
À
1hJ(XH,F) couplings of 5–12 Hz. The precise orientation of
À
X H of primary and secondary XH groups may be deduced
from the vicinal J(H,XH) couplings. Cyclic carbohydrates,
especially rigid pyranosides, are ideal for the investigation of
O H···F H-bonds; they allow access to epimers with the
3
[7,9]
À
À
acceptors of X H (X = N or O).
A Protein Database
search, however, suggests that approximately 10% of all CF
desired orientation of the F and the secondary OH substitu-
ents. Since OH groups of carbohydrates show maximal
3J(H,OH) couplings to antiperiplanar CH of 12–12.5 Hz,[15a]
the Karplus equation of Fraser et al.[21] (J180 = 12.1 Hz) is
considered in preference to the more recent equation of
Serianni and co-workers[22] (J180 = 14.6 Hz). Vasella, Bernet,
and co-workers investigated the intramolecular O H···F C
H-bonds of fluorinated myo-inositols (1[23] and 2[24]) and
levoglucosans (3–6)[14] in CDCl3 (Figure 1). The combined
analysis of the 1hJ(OH,F) and 3J(H,OH) couplings evidenced
divalent H-bonds in 1, 2, and 6 and trivalent (so-called
bifurcated) H-bonds in 3–5. Bifurcated H-bonds were also
observed in a-l-talopyranoside 7 (R = daunomycinon-7-yl)[25]
and in b-l-ribopyranoside 8.[26]
groups may be involved in intermolecular H-bonding,[10] an
[*] Dr. B. Bernet
Laboratorium fꢀr Organische Chemie, ETH Zꢀrich
Wolfgang Pauli Strasse 10, 8093 Zꢀrich (Switzerland)
E-mail: bernet@org.chem.ethz.ch
À
À
Dr. G. T. Giuffredi, Prof. V. Gouverneur
Chemistry Research Laboratory, University of Oxford
12 Mansfield Road OX1 3TA Oxford (UK)
E-mail: veronique.gouverneur@chem.ox.ac.uk
[**] We thank Prof. B. Jaun, Dr. B. W. Schweizer (both ETH Zꢀrich), Dr.
T. D. W. Claridge, Dr. B. Odell, and Dr. A. L. Thompson (all
University of Oxford) for helpful advices concerning NMR spec-
troscopy and X-ray crystallography, and the Berrow Foundation for
a scholarship to G.T.G.
Herein, we investigate the intramolecular H-bonding of
pyranosides possessing 1,3-diaxial fluoro and hydroxy sub-
stituents and evaluate the influence of the nature and the
Supporting information for this article is available on the WWW
10524
ꢀ 2013 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim
Angew. Chem. Int. Ed. 2013, 52, 10524 –10528