Organic Letters
Letter
that SMDMAP probably functions as a better leaving group
and more preferentially exists as the corresponding highly
nucleophilic thiolate anion than MPAA does, we envisioned
that at the appropriate pH, SMDMAP should be superior to
MPAA as an effective NCL additive. More importantly, due to
its alkyl thiol structure, SMDMAP was expected not to
interfere with the subsequent desulfurization.
products without significant side products, but NCL of 6c
Although an acceptable amount of epimerization product13
(<6%) was detected in the NCL of Ser thioester 6d with the
hydrolyzed material being generated, >90% conversion was
desired material along with formation of ∼8% lysine-related
Synthesis of SMDMAP 2 is shown in Scheme 1 and begins
with 4-chloro-2-pyridinemethanol (3). Reaction of 3 with
We next compared the catalytic activity of 2 with that of
other additives (Figure 2). In the presence of 50 mM TCEP
Scheme 1. Synthesis of the Disulfide Dimer of 2-
Sulfanylmethyl-4-dimethylaminopyridine (di-SMDMAP 5)
a
a
Reagents and conditions: (i) Me2NH·HCl, NaOH, H2O, 155 °C;
(ii) SOCl2, CH2Cl2, rt; (iii) TrSH, DBU, CH2Cl2, rt; (iv) TFA,
triethylsilane, CH2Cl2, rt; (v) DMSO/H2O (9:1), rt.
dimethylamine followed by chlorination with thionyl chloride
and subsequent nucleophilic substitution with triphenylmetha-
nethiol (TrSH) afforded a sulfanyl moiety incorporating
DMAP (4) in 56% isolated yield over three steps. Treatment
of 4 in TFA/CH2Cl2 with triethylsilane gave a mixture of 2 and
the corresponding disulfide (di-SMDMAP 5). Because these
components were difficult to separate, the disulfide (5) was
isolated as its hydrochloride salt12 in 28% yield (after
recrystallization) through the HCl treatment followed by
DMSO-mediated oxidation of the mixture. The resulting
disulfide additive 5, following in situ reduction with TCEP, can
be used for NCL.
Figure 2. Comparison of SMDMAP (2) with other NCL additives.
Percentages of ligation were determined by HPLC analyses with UV
detection at 220 nm and calculated using the equation percent ligated
= 100[integration (integ.) 8b]/(integ. 7 + integ. 8b).
Having the hydrochloride salt of the requisite thiol additive
5·2HCl as a crystalline and shelf-stable compound, we
examined its applicability to NCL using model thioesters [H-
LYRANX-S-CH2CH2CO-L-NH2 (6)] and an N-terminal
cysteine peptide [H-CSPGYS-NH2 (7)]. Initially, the NCL
of an Ala-containing thioester [X = Ala (6a), 1 mM] with 7 (1
mM) in 6 M guanidine·HCl (Gn·HCl)/0.2 M phosphate
buffer in the presence of 50 mM TCEP and 10 mM 5 at pH
6.9 and 37 °C for 3 h was found to go almost to completion,
affording the ligation product [H-LYRANA-CSPGYS-NH2
(8a)] in 94% conversion (isolated yield of 85%) (see Figure
S1A). At pH 4, no NCL product was observed and the starting
materials remained (Figure S1B). The reaction at pH 6
required >3 h to reach completion (Figure S1C), and the
reactions at pH 8 or 10 were accompanied by the formation of
the ε-amino group of lysine was observed at pH 6.9 in an
attempt using a Lys-containing amine component (Figure S2).
Accordingly, we employed the NCL at pH 6.9 as optimized
conditions for further examination of the substrate scope.
Several thioesters 6 with different C-terminal amino acids [X
= Ala (6a), Leu (6b), Val (6c), Ser (6d), and Lys (6e)] were
subjected to the reaction with 7 (Figure S3). Ligations at
aliphatic amino acid sites (6a−6c) afforded the desired
and each of active additives at 20 mM, the NCL of 6b (2 mM)
with 7 (1 mM) at pH 6.9 was performed. SMDMAP showed
NCL-promoting activity comparable or slightly superior to that
of MPAA, as was expected from the pKa values. In the case of
low concentrations (20 mM) of desulfurization-compatible
additives, SMDMAP facilitated the NCL more efficiently than
MESNa, TFET, or 1,2,4-triazole.14 Although the reaction using
a high concentration (250 mM) of the volatile TFET (bp 35−
37 °C) reached the level comparable to that of the MPAA or
SMDMAP-mediated reaction, careful handling of TFET in a
chemical fume hood is necessary. In contrast to TFET, use of
the nonmalodorous SMDMAP allows for the ligations without
ventilating facilities.
We next evaluated the applicability of 2 to desulfurization
reactions (Figure S5). NCL of 6a with 7 in the presence of 50
mM TCEP and 10 mM 5 at pH 6.9 and 37 °C for 3 h,
followed by addition of desulfurization buffer containing 200
mM TCEP, 80 mM VA-044, and 80 mM glutathione and
subsequent reaction for 3 h at 37 °C, yielded the
desulfurization peptide [H-LYRANA-ASPGYS-NH2 (10)] in
77% isolated yield. Because additive 2 proved to be compatible
with the one-pot NCL−desulfurization protocol, we next
evaluated the applicability of 2 to one-pot, sequential NCL−
B
Org. Lett. XXXX, XXX, XXX−XXX