Z. Ma et al.
Bioorganic & Medicinal Chemistry Letters 40 (2021) 127954
(ꢀ )-isomer was almost inactive.
Table 1
In vitro antitumor activities of simplified evodiamine derivatives.
Previously, Top1 and Top2 were identified as the targets of evodi-
amine and its derivatives.22–25 These compounds could inhibit the
growth of tumor cells by stabilizing the cleavable complex composed of
Top1-DNA and inhibiting Top2 catalytic activity. Herein, the inhibitory
activity of representative compounds 33, 34, 41, 44 and 45 was inves-
tigated by Top1/2-mediated DNA cleavage assays. CPT, etoposide (Eto)
and evodiamine were used as positive controls. As demonstrated in
Fig. 4A, all tested compounds were found to be active against Top1-
Compds
IC50 (μM)
HCT116
A549
MDA-MB-231
11
14
15
16
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
1
21.45 ± 5.26
>100
>100
45.38 ± 0.28
>100
>100
57.87 ± 1.10
32.47 ± 1.40
2.53 ± 0.06
1.73 ± 0.40
6.18 ± 0.74
4.80 ± 0.09
58.09 ± 8.93
5.56 ± 0.13
6.14 ± 0.22
5.13 ± 0.12
0.36 ± 0.04
0.72 ± 0.02
7.76 ± 0.24
6.45 ± 0.4
>100
51.23 ± 1.07
57.56 ± 1.23
1.48 ± 0.42
1.24 ± 0.23
62.38 ± 4.62
3.28 ± 0.13
6.18 ± 0.04
1.11 ± 0.09
2.81 ± 0.13
3.01 ± 0.11
0.57 ± 0.06
0.34 ± 0.03
0.27 ± 0.01
22.15 ± 1.74
30.97 ± 0.22
40.8 ± 1.61
18.82 ± 0.82
>100
>100
5.29 ± 1.10
12.71 ± 0.59
18.71 ± 3.98
9.27 ± 0.98
25.49 ± 2.15
2.15 ± 0.65
11.76 ± 0.67
12 ± 1.6
mediated relaxation of supercoiled DNA at a concentration of 500
At the lower concentration of 100 M, most of the target compounds
retained their inhibitory activity except for compound 34.
μM.
μ
Moreover, the Top2 inhibitory potency of representative compounds
33, 34, 41, 44 and 45 was detected by incubation with purified Top2
and monitoring the appearance of fractured DNA fragments. As shown
in Fig. 4B, all tested compounds exhibited potent Top2 inhibitory ac-
7.91 ± 0.58
3.80 ± 0.31
2.45 ± 0.18
17.41 ± 1.98
30.25 ± 0.99
11.86 ± 1.01
2.09 ± 0.13
27.18 ± 2.59
1.66 ± 0.02
44.63 ± 1.27
13.57 ± 0.81
14.07 ± 0.51
0.76 ± 0.04
19.30 ± 0.27
>100
tivity at the concentrations of 250
μM and 100 μM. However, they
exhibited only moderate Top2 inhibitory activity at a concentration of
2.65 ± 0.86
3.24 ± 0.04
3.62 ± 0.01
6.73 ± 0.64
0.54 ± 0.10
4.28 ± 0.01
1.97 ± 0.06
0.49 ± 0.05
0.16 ± 0.01
20.95 ± 1.18
19.55 ± 1.78
0.010 ± 0.01
50 μM. To further understand the interactions of compound 45 with
Top1 and Top2, molecular docking was performed. As shown in Fig. 4E,
compound 45 became embedded in the site of DNA cleavage of Top1-
DNA complex (PDB: 1T8I)28 to form a sandwich-like interaction
0.59 ± 0.05
1.08 ± 0.07
0.68 ± 0.01
0.29 ± 0.01
0.16 ± 0.03
>100
network, and face-to-face
π-π interactions were also observed. The
carbonyl group of compound 45 formed a hydrogen bond with Asn722.
The methoxyl group was found to form a hydrogen bond with Arg364.
The binding mode of compound 45 with Top2α was shown in Fig. 4F.
48.98 ± 5.03
0.075 ± 0.01
Compound 45 fit well into the unwinding domain of Top2 (PDB:
5GWK),29 and
π–π stacking interactions were observed between the
CPT
0.045 ± 0.02
indole ring of compound 45 and DNA. Besides, the 6-methoxyl group
was found to form a hydrogen bond with Arg487. Collectively, the above
results indicated that the simplified evodiamine derivatives might act as
dual Top1/2 inhibitors.
Table 2
In vitro antitumor activities of the isomers of compound 45 (IC50, μM).
To further elucidate the molecular mechanism of the simplified
evodiamine derivatives, compound 45 was selected to evaluate cell
apoptosis by flow cytometry based on the in vitro antitumor activity. As
shown in Fig. 5A, after treatment with different concentrations (0.03,
Isomers
HCT116
A549
MDA-MB-231
(ꢀ )-45
(+)-45
17.7 ± 3.18
0.13 ± 0.01
16.13 ± 2.61
0.65 ± 0.02
>50
0.042 ± 0.01
0.15, 0.75 and 1.5 μM) of compound 45 for 48 h, the percentage of
substituents at the para-position of the E ring retained antitumor activity
(compounds 26, 30 and 31) compared with compound 25. However,
nitro-substituted compound 29 showed significantly reduced potency.
In addition, the meta-position substituted derivatives exhibited a slight
effect on the antitumor activity (compounds 28 and 32), while the
introduction of fluorine at the ortho-position (compound 27) led to a loss
in the antitumor activity against A549 and MDA-MB-231 cells. Inter-
estingly, the length of the linker between the C and E rings showed an
important influence on antitumor activity, as compound 33 was
approximately 15 times more potent than compound 25 in the HCT116
cell line. Similar to compound 25, ortho-position substituted derivative
35 also exhibited reduced antitumor potency.
apoptotic cells increased from 10.11% to 30.98%, which was signifi-
cantly higher than that in control (6.77%). These results indicated that
compound 45 could kill cancer cells by inducing cell apoptosis. In
addition, western blotting analysis was conducted to further illustrate
the molecular mechanism of apoptosis induced by compound 45. As
shown in Fig. 5B, after incubation with various concentrations of com-
pound 45 for 24 h, the expression level of Bax increased, while the Bcl-2
protein was downregulated with increasing concentration of 45. In
addition, the expression levels of caspase-3 and caspase-9 increased
dose-dependently after incubation with compound 45, indicating that
compound 45 might induce caspase-dependent apoptosis in HCT116
cells. Cytochrome C has been reported to play an important role in the
mitochondrial apoptosis pathway.30 Therefore, the expression of cyto-
chrome C was determined. The results showed that compound 45
upregulated the expression of cytochrome C in a dose-dependent
manner, indicating that mitochondrial apoptosis was involved in the
inhibition of cell proliferation by compound 45.
Further SAR studies of the C ring revealed that monosubstituted
derivatives led to a decrease in antitumor activity. In addition, 3,4-
difluoro-substituted derivative 37 displayed decreased antitumor ac-
tivity, whereas improved antitumor activity against HCT116 and MDA-
MB-231 cells was observed by the introduction of 3,4-dichlorophenyl
substitution (compounds 41, 43 and 44). Inspired by these encour-
aging results, a derivative simultaneously containing the 3,4-dichloro-
phenyl substitution and a phenethyl group was designed (compound
45). To our delight, compound 45 showed excellent antitumor activity
Previously, evodiamine derivatives were reported to arrest cancer
cells at the G2/M phase.31 Therefore, the effects of compound 45 on cell
cycle progression in HCT116 cells was estimated by the flow cytometric
method (Fig. 6). After 24 h of exposure to compound 45 at the con-
with IC50 values of 0.16, 0.76 and 0.16 μM against HCT116, A549 and
centrations of 0.03, 0.15, 0.75 μM, the ratios of cells in the G2/M fraction
MDA-MB-231 cells, respectively. In order to investigate the influence of
C1 chirality on the antitumor activity, compound 45 was isolated by
chiral chromatography and their values of optical rotation were deter-
mined (Supplementary Material, Table S1). As shown in Table 2, (+)-45
was more active than the (ꢀ )-isomer against all these three cell lines. In
particular, the (+)-45 demonstrated excellent antitumor activity with
were 32.12%, 78.12%, and 88.37%, respectively. Moreover, the ratios of
cells in the G2/M fraction were 67.92% at the concentrations of 0.03
μM
when the incubation time was prolonged to 48 h, indicating a better
time-dependent trend. With the increased concentration of compound
45, nearly all the tumor cells were blocked at G2/M phase. In contrast,
the ratio of untreated cells in the G2/M phase of the cell cycle was
27.78% and 25.01%. Therefore, compound 45 could arrest the HCT116
IC50 value of 0.042
μM against MDA-MB-231 cell. In contrast, the
5