Inorganic Chemistry
Article
Crystal Structure Determinations. Single-crystal X-ray diffrac-
tion data for ThOQ (Q = S, Se, Te) were collected with the use of
graphite-monochromatized MoKα radiation (λ = 0.71073 Å) at 100 K
on a Bruker APEX2 diffractometer.17 For ThOS and ThOSe, data
were collected by a scan of 0.3° in ω in groups of 606 frames at φ
settings of 0°, 90°, 180°, and 270°. Crystal decay was monitored by
recollecting 50 initial frames at the end of the data collection. For
ThOTe the data collection strategy was obtained from an algorithm in
COSMO in the program APEX217 as a series of 0.3° scans in φ and ω.
For all data collections the crystal-to-detector distance was 6.0 cm and
the exposure time was 10 s/frame. The collection of intensity data as
well as cell refinement and data reduction were carried out with the
use of the program APEX2.17 Face-indexed absorption, incident beam,
and decay corrections were performed with the use of the program
SADABS.18 The structures were solved with the direct-methods
program SHELXS and refined with the least-squares program
SHELXL.19 The atomic positions were standardized with the program
STRUCTURE TIDY.20 Additional experimental details are given in
Table 1 and in the Supporting Information.
Periodic spin-polarized band structure calculations were performed
with the use of the first principles DFT program VASP (Vienna ab
initio simulation package); pseudopotentials were applied with a plane-
wave basis.22−25 The exchange correlation potential was chosen as the
generalized gradient approximation (GGA) in a projector augmented
wave (PAW) method, specifically GGA (PW91).26,27 Relativistic core
pseudopotentials were used. In selected cases a perturbative treatment
of spin−orbit coupling was made, after lattice relaxations had
converged. Automatically generated Monkhorst−Pack grids were
used to carry out Brillouin zone integrations.28 6 × 6 × 6 k-point
meshes were chosen for relaxations, total energy calculations,
establishing convergence, energy comparisons, and DOS analysis.
Ionic relaxation convergence was established when Hellmann−
Feynman forces on each ion relaxed below 0.02 eV/Å. Additionally
for ThOS, an onsite Coulomb correction to the Th 5f shell, that is the
Hubbard U term,29 was implemented in the rotationally invariant
approach where the onsite Coulomb term U and onsite exchange term
J were treated together as Ueff = U − J.30 Because the 5f shell is
nominally unoccupied, we expected that the effects of Ueff on optical
properties, such as the band gap, would be minimal. It was
nevertheless important to check this by direct calculation.
In the calculations, the electrons described as core in the PAW
potentials were those composed of [Xe]5d104f14 for Th, leaving 12
valence elections per atom as 6s2p6d27s2; [He] for O, leaving six
valence electrons as 2s2p4; [Ne] for S, leaving six valence electrons as
3s2p4; [Ar]3d10 for Se, leaving six valence electrons as 4s2p4; and
[Kr]4d10 for Te, leaving six valence electrons as 5s2p4. Calculations
were conducted on the 6-atom periodic crystallographic unit cell in the
tetragonal space group P4/nmm; atomic positions within the fixed 100
K unit cell were relaxed to their lowest energy positions.
Oxidation states as ionic charges were determined by volume
integration of electron density with the use of both atomic sphere
integrations with radii, RWS, and Bader’s topological atom
method.31−33 Rather than dividing space into hard spheres (RWS),
the approach of Bader is to divide space into atomic regions
determined by zero-flux charge-density surfaces.31 Using these two
methods, we define the oxidation state as the difference between the
number of valence electrons contained within a volume and the
number assigned to the neutral atom. The values of RWS were initially
set to the standard radii34 and then increased to fill the unit-cell
volume. Final values of RWS were chosen as 1.5, 1.6, 1.8, 1.8, and 1.8 Å
for Th, O, S, Se, and Te, respectively. The radii of S, Se, and Te were
set to the same value to enable a consistent comparison among the
chalcogenides.
a
Table 1. Crystal Data and Structure Refinements for ThOQ
compound
color
ThOS
ThOSe
orange
ThOTe
black
yellow
Fw
280.10
327.00
375.64
a (Å)
3.9580(2)
6.7468(3)
105.694(9)
8.801
4.0176(4)
7.0198(6)
113.31(2)
9.584
4.1173(3)
7.5289(6)
127.63(2)
9.775
c (Å)
V (Å3)
ρc (g cm−3
)
μ (mm−1
)
71.08
81.45
69.25
b
R(F)
0.0134
0.0177
0.0130
c
Rw(F2)
0.0298
0.0455
0.0345
a
For all structures Z = 2, space group = P4/nmm, λ = 0.71073 Å, T =
b
c
2
2
100(2) K. R(F) = ∑||Fo| − |Fc||/∑|Fo| for Fo > 2σ(Fo ). Rw(F2) =
{∑[w(Fo 2 − Fc2)2]/∑wFo }1/2 for all data. w−1 = σ2(Fo ) + (qFo )2 for
4
2
2
2
2
2
Fo ≥ 0; w−1 = σ2(Fo ) for Fo < 0. q = 0.0127 for ThOS, 0.0249 for
ThOSe, and 0.0135 for ThOTe.
Optical Measurements. Single-crystal optical absorption meas-
urements were performed at visible frequencies from 3.2 eV (387 nm)
to 1.5 eV (827 nm) and at IR frequencies from 1.8 eV (668 nm) to
1.08 eV (1148 nm) at 298 K. A single crystal of ThOQ (Q = S, Se, Te)
mounted on a goniometer head was inserted on a custom-made holder
fitted to a Nikon Eclipse Ti2000−U inverted microscope. The crystal
was positioned at the focal plane above the 20× objective of the
microscope and illuminated with a tungsten-halogen lamp. The
transmitted light was spatially filtered with a 200 μm aperture. For
visible measurements, light was dispersed by a 150 groove/mm grating
in an Acton SP2300i imaging spectrometer, and collected on a back-
illuminated, liquid nitrogen-cooled CCD (Spec10:400BR, Princeton
Instruments). For IR measurements, light was dispersed by a 150
groove/mm grating in an Acton SP2300i imaging spectrometer
configured for IR wavelengths, and collected on a liquid nitrogen-
cooled InGaAs Array detector (OMA V 1024−1.7, Princeton
Instruments). Spectra of ThOS and ThOSe at visible wavelengths
and of ThOTe at IR wavelengths can be found in Figure 1. Spectra of
ThOTe at visible wavelengths and of ThOS at IR wavelengths were
acquired as controls and are available in the Supporting Information.
Theoretical Calculations. Bond valences were calculated from
standard parameters21 as a simple empirical measure of oxidation state.
The bond valence of an atom, V, is defined as the sum of the individual
bond valences, vi, surrounding the atom: V = ∑vi . Individual bond
valences were calculated from experimental bond lengths, Ri, and
empirical parameters, R0, which are unique to each atom pair: vi =
exp[(R0 − Ri)/0.37]. The parameter R0 for the atom pairs Th−O,
Th−S, Th−Se, and Th−Te was 2.167, 2.64, 2,76, and 2.94 Å,
respectively.21
RESULTS AND DISCUSSION
■
Syntheses. Because of the oxophylicity of Th and the
stability of the ThOQ compounds, these are often the major
products in reactions involving Th and a chalcogen with or
without a variety of other elements when such reactions are
carried out in fused-silica tubes, even if such tubes are carbon-
coated. This is apparent in the present syntheses.
The reaction that yielded ThOS contained, in addition to Th
and S, Ge and NaBr. The Ge was present because the reaction
was intended as an exploration of the Th/Ge/S system with
NaBr as flux. The reaction that yielded ThOSe contained, in
addition to Th and Se, Fe and CsCl. The Fe was present
because the reaction was intended to synthesize ThFeSe3. The
reaction that yielded ThOTe contained only Th and Te and
was intended to synthesize ThTe2. The most likely oxygen
source in the reactions was the fused-silica tubes, because the
reaction tubes were etched despite being carbon-coated.
Experimental Structures. The ThOQ compounds crys-
tallize with two formula units in the tetragonal space group P4/
nmm. They adopt the PbFCl structure with Th, O, and Q in
place of Pb, F, and Cl, respectively. The site symmetries of Th,
O, and Q are 4mm, 4mm, and 4m2, respectively. The unit-cell
̅
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dx.doi.org/10.1021/ic300510x | Inorg. Chem. 2012, 51, 8112−8118