Angewandte
Communications
Chemie
Lipophilicity Very Important Paper
Investigating the Influence of (Deoxy)fluorination on the Lipophilicity
of Non-UV-Active Fluorinated Alkanols and Carbohydrates by a New
logP Determination Method
Bruno Linclau,* Zhong Wang, Guillaume Compain, Vincent Paumelle, Clement Q. Fontenelle,
Neil Wells, and Alex Weymouth-Wilson
Abstract: Property tuning by fluorination is very effective for
a number of purposes, and currently increasingly investigated
for aliphatic compounds. An important application is lip-
ophilicity (logP) modulation. However, the determination of
logP is cumbersome for non-UV-active compounds. A new
variation of the shake-flask logP determination method is
presented, enabling the measurement of logP for fluorinated
compounds with or without UV activity regardless of whether
they are hydrophilic or lipophilic. No calibration curves or
measurements of compound masses/aliquot volumes are
required. With this method, the influence of fluorination on
the lipophilicity of fluorinated aliphatic alcohols was deter-
mined, and the logP values of fluorinated carbohydrates were
measured. Interesting trends and changes, for example, for the
dependence on relative stereochemistry, are reported.
lower lipophilicity. Examples include the replacement of gem-
dimethyl groups by oxetanes,[7] or using 1,3,4-oxadiazoles
instead of their 1,2,4-isomers.[8]
Lipophilicity is also influenced by fluorination.[9,10]
Whereas it is still frequently stated that fluorination increases
lipophilicity, this is typically limited to aromatic sub-
strates.[9,11] For aliphatic compounds, C H!C F, or even
CH3!CF3 exchange, can lead to a logP decrease.[9,10a] As
fluorine is introduced in lead optimization for the optimiza-
tion/introduction of an ever-increasing list of properties, it is
important to understand how the compound lipophilicity will
be influenced when fluorination is applied for this purpose, or
indeed how it can be directly used to modulate lipophilicity.
For aromatic substrates, the influence of fluorination on
logP has been studied in detail. In contrast, few systematic
studies are available for aliphatic compounds.[12] In a seminal
contribution,[12b] Carreira, Müller, and co-workers showed
that two competing effects affect lipophilicity, namely
À
À
P
otency optimization is a natural focus in drug development.
However, potency gain achieved at the expense of physico-
chemical and pharmacokinetic properties compromises drug
efficacy and safety, increasing attrition rates.[1] In this regard,
the inappropriate use of lipophilicity (logP) to increase
potency, which is referred to as “molecular obesity”, has been
identified as a key problem.[2] The ability to maintain low
lipophilicity levels while increasing molecular weight is
regarded as one of the keys to a successful drug-discovery
program.[3] New efficiency metrics have been introduced for
gauging the lipophilicity contribution to potency.[1a,4,5]
À
changes in polarity (polar C F bond) and in the hydro-
phobicity of the surface (non-polarizable fluorine atoms).
They also showed for a series of trifluoromethylated aromatic
compounds, that this balance depends on the absolute logP
value of the compound: For highly lipophilic compounds,
changes in polarity tend to dominate (logP tends to decrease
upon F introduction), whereas for polar compounds, changes
in the hydrophobic surface area dominate (logP tends to
increase). Later on, Müller introduced a straightforward bond
vector analysis as a qualitative method for assessing the
polarity of partially fluorinated alkyl and alkoxy groups, and
its repercussions on compound lipophilicity.[13]
Hence, given that late-stage drug attrition is a very costly
and major contemporary problem, new insights for control-
ling lipophilicity (which is related to important properties
such as bioavailability)[6] are of great interest. An attractive
strategy is substituting substructures for alternatives with
The presence of functional groups close to fluorination
sites further affects logP, often in unpredictable ways, which
are yet to be fully explored. A clear barrier for progress in this
field is the actual logP determination process. Whereas many
methods are available, these are cumbersome (requiring
calibration curves). HPLC-based methods[14] are less suitable
when accurate logP values are required and subject to
limitations.[15] Above all, quantification typically rests on UV
spectroscopy, which hampers the measurement of non-UV-
active solutes (even commercially). NMR-based meth-
ods[12a,16] are cumbersome or not easily amenable for use in
typical multiuser NMR facilities. The calculation of logP is
also possible (clogP), but accuracy is strongly dependent on
the training sets used, stereochemistry cannot be taken into
account, and errors of multiple logP units are no exception.[17]
[*] Prof. Dr. B. Linclau, Z. Wang, Dr. G. Compain, V. Paumelle,
Dr. C. Q. Fontenelle, Dr. N. Wells
Chemistry, University of Southampton
Highfield, Southampton, SO17 1BJ (UK)
E-mail: bruno.linclau@soton.ac.uk
Dr. A. Weymouth-Wilson
Dextra Laboratories Ltd, The Science and Technology Centre
Earley Gate, Whiteknights Road, Reading RG6 6BZ (UK)
Supporting information for this article is available on the WWW
ꢀ 2015 The Authors. Published by Wiley-VCH Verlag GmbH & Co.
KGaA. This is an open access article under the terms of the Creative
Commons Attribution License, which permits use, distribution and
reproduction in any medium, provided the original work is properly
cited.
Herein, we present
a practical and experimentally
straightforward method for the accurate determination of
674
ꢀ 2016 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim
Angew. Chem. Int. Ed. 2016, 55, 674 –678