60
M.F. Mostafa et al. / Journal of Molecular Structure 1127 (2017) 59e73
Table 1
ethanol solution kept in vacuum desiccator for 6 months, for
chloride and bromide hybrids respectively. Chemical analysis and ir
absorption spectrum (in the range 400 cmꢁ1e4000 cmꢁ1) were
carried out at the micro analysis center at university of Cairo.
The elemental analysis showed the percent of carbon ¼ 39.50%
(40.46%), 29.30% (28.78%) and hydrogen ¼ 10.12% (9.701%), 6.50%
(6.902%) for C7Cl and C7Br respectively; theoretical values are
given in brackets.
X-ray data collection parameters and refinement, of C7C and C7B at 298 K.
a. (C7C)
b. (C7B)
Formula
Mr
Space group
a
B
C
b
V
Z
Dx
l
qmax
C7H20N2Cl2
207.784
Monoclinic P21/c
4.7838 (2)Å
16.9879 (8)Å
14.9476 (8)Å
97.773 (2)ꢀ
1203.58 (10)Å3
4
C7H20N2Br2
292.059
Monoclinic P21/c
4.79520 (10)Å
16.9740 (5)Å
14.9281 (5)Å
97.793 (2)ꢀ
1203.83 (6)Å3
4
The IR spectrum was obtained using FTIR 1650 Perkin Elmer
spectrometer. The IR and the chemical analysis results confirmed
formation of the two samples with chemical formula
[(CH2)7(NH3)2] X2, X ¼ Cl/Br.
1.147 Mg mꢁ3
0.71073
27.48ꢀ
1.612 Mg mꢁ3
0.71073
27.48ꢀ
Differential thermal scanning (DSC) measurements were carried
out on a Shimadzu thermal scanner model DSC-50 at 10 ꢀC/min.
Powdered crystals weighing 2.5 mg were used. Measurements
were performed in a flow of dry nitrogen gas at a rate of 50 ml/min.
The data were calibrated with the melting transition of Indium at
157 ꢀC.
m
0.70 mmꢁ1
2756
6.69 mmꢁ1
5182
Measured reflections
Independent reflections
Observed reflections
Criterion
Rint
3088
1055
I > 3.00 sigma(I)
0.052
2993
1959
I > 3.00 sigma(I)
0.030
X-ray crystallographic data were collected on Enraf-Nonius 590
Kappa CCD single crystal diffractometer with graphite mono-
H
K
L
ꢁ6 /6
ꢁ6 /6
0 / 21
0 / 21
ꢁ19 / 19
ꢁ19 / 19
chromator using MoK
collected at room temperature using 4-
a
(
l
¼ 0.71073 Å). The intensities were
R(all)
R(gt)
wR(ref)
wR(all)
S(ref)
0.185
0.072
u
-scan mode. The cell
0.093
0.266
0.276
2.278
0.041
0.080
0.086
1.613
refinement and data reduction were carried out using Denzo and
Scalepak programs [18]. The crystal structure was solved by the
direct method using SIR92 program [19] which revealed the posi-
tions of all non-hydrogen atoms and refined by the full matrix least
square refinement based on F2 using maXus package [20]. The
temperature factors of all non-hydrogen atoms were refined
anisotropically, then hydrogen atoms were introduced as a riding
model with CeH ¼ 0.96 and refined isotropically. Molecular
graphics were prepared using ORTEP Program [21].
Ac conductivity is measured using computer controlled SR-830
lock-In amplifier. A home built cryostat was used. Temperature
was measured using a copper constantan thermocouple. Well
ground crystallites were pressed in the form of a disc 1.0 cm in
diameter and 1.2 mm thickness under a pressure of 2.4 kPa. The
surfaces were coated with Ag paste to ensure good electrical con-
tacts. The sample chamber was evacuated for 12 h prior to mea-
surements to ensure moisture free atmosphere. Several virgin
samples were measured to ensure reproducibility of results.
D/
smax
0.037
0.016
Drmax
Drmin
wR(gt)
0.98eÅ3
0.96eÅ3
ꢁ1.32eÅ3
0.266
ꢁ0.81eÅ3
0.080
which are hydrogen bonded to the halide anion. Each two parallel
chains are connected to each other forming a couple via halide ion
Cl(2)/Br(2). The nearly perpendicular couples are connected via
Cl(1)/Br(1). Fig. 1c depicts molecular arrangement and hydrogen
bond net-work of C7Cl along a-axis. It reveals the occurrence of four
short NeCl non-bonded contacts, three of these contacts may be
ascribed to charge-assisted hydrogen-bond formation and the
fourth is a short contact directed approximately along the exten-
sion of the CeN bond. Three, H3A, H3B, and H3C, have values
within the range of the hydrogen bond distance 2.393 Å, 2.254 Å
and 2.289 Å respectively.
It is worth mentioning that hydrogen bond length of HeCl1 is
shorter than HeBr1 while the opposite is true where the HeBr2 is
slightly longer than the hydrogen bond attached to HeC12 as listed
in Table 5. The average bond length NeC ¼ 1.511 (Å), CeC ¼ 1.51 (Å),
CeH ¼ 0.960 (Å) are in the acceptable range with previously re-
ported similar hybrids [6e16].
3. Results and discussion
3.1. Crystal structure
The two isomorphous hybrids crystallize in monoclinic P21/c
with 4 molecules/unit cell each. Lattice spacing are a ¼ 4.7838 (2) Å,
4.79520 (10) Å, b ¼ 16.9879 (8) Å, 16.9740 (5) Å, c ¼ 13.9476 (8) Å,
13.9281 (5) Å,
b
¼ 97.773 (2)ꢀ, 97.793(2)ꢀ, V ¼ 1203.58 (10) Å3,
3.2. Lattice potential energy, molecular and cation volume
1203.83 (10) Å3 for chloride and bromide respectively as listed in
Table 1 along with data collection parameters and refinement.
Table 2 lists the fractional atomic coordinates and equivalent
Estimation of lattice potential energy U (pot) for the general
type of the hybrids of MpXq can be obtained using Eq. (1) below
[22]:
isotropic thermal parameters. Table
3 lists the anisotropic
displacement parameters (Å2). The selected bond length and bond
angles and dihedral angles are listed in Table 4. Table 5 lists the
hydrogen bonds geometry of the two samples.
h
i
X
UðpotÞ ¼
where
niz2
a
=V1=3
þ
b
(1)
As can be seen from Table 4, for C7C the chains deviate slightly
from planarity. It is expected that as the temperature increases
conformation changes will take place, which would lead to phase
transitions.
Fig. 1a is an ORTEP view of the atoms where X ¼ Cl/Br and Fig. 1b
shows ORTEP view of molecular arrangement in the unit cell of C7B.
The cation exists in an ideal fully extended conformation in layers
and lies on a mirror plane. The chains extend in a zigzag structure of
seven carbon atoms with two NH3 cations attached at chain ends
a
and b are appropriate fitting coefficients chosen according
to the stoichiometry of the hybrid, ni is the number of ions with a
charge zi in the formula unit, Vm is the molecular volume.
For MX2 (1:2) hybrids, the lattice potential energy is given by
Ref. [22]:
ꢀ
ꢀꢀ
ꢀ
h .
i
ꢀ
ꢀꢀ
ꢀ
UðpotÞ ¼ Zþ Zꢁ y a V1=3
þ
b
(2)
ꢀ
ꢀꢀ
ꢀ