A.R. Ndifor et al.
Biochemistry and Biophysics Reports 27 (2021) 101014
variant structures that might have potential therapeutic activities. In
continuation of our investigation on Synsepalum msolo, we report herein
the elucidation of the structures of two new sphingolipids and evalua-
tion of their antibacterial and anti-yeast effects along with three known
phenolic compounds on microorganisms.
(m, H-17, H-21, H-22), 5.39 (m, H-13), 5.37 (m, H-12), 5.36 (m, H-8),
5.35 (m, H-9), 4.32 (d, 7.8, H-1′′), 4.28 (d, 4.8, 7.8, H-2), 4.07 (dd, 2.1,
10.5, H-1b), 4.05 (d, 6.0, H2′), 3.92 (dd, 3.9, 10.8, H-6a’’), 3.82 (dd, 3.6,
10.5, H-1a), 3.70 (dd, 3.9, 10.8, H-6b’’), 3.62 (dd, 6.0, 12.0, H-3), 3.54
(dt, 6.6, 12.6, H-4), 3.42 (m, H-5′′), 3.38 (m, H-3′′), 3.30 (m, H-4′′), 3.20
(dd, 7.8, 8.7, H2′′), 2.06 (m, H-10), 2.05 (m, H-5), 2.04 (m, H-7, H-11),
2.02 (m, H-6, H-15, H-18, H-21, H-24), 2.01 (m, H-3′), 2.00 (m, H-14, H-
19, H-20, H-25), 1.70 (m, H-4′), 1.36 (m, H-5′), 1.30 (s, H-30), 1.28 (br.s,
H-26 to H-27 and H-6′ to H-15′), 0.93(t, 6.6, H-29, H-16′). 13C-NMR (δ,
150 MHz): 175.6 (C-1′), 130.2 (C-8, C-16, C-22), 130.0 (C-12, C-17),
129.5 (C-9, C-23), 129.4 (C-13), 103.4 (C-1′′), 73.6 (C-2′′), 76.6 (C-3′′),
76.5 (C-5′′), 74.1 (C-3), 71.6 (C-2′), 71.5 (C-4), 70.3 (C-4′′), 68.5 (C-1),
61.3 (C-6′′), 50.2 (C-2), 34.0 (C-5, C-11, C-18 C-24, C-3′), 32.3 (C-6),
32.0 (C-21), 31.6 (C-14, C-15, C-19, C-20, C-25), 29.2 (C-26 to C-27, C-4′
to C-14′), 26.6 (C-7, C-10), 22.4 (C-28, C-15′), 13.1 (C-29, C-16′), see
Supplemental Table S1.
2. Material and methods
2.1. Plant material
The leaves and stem bark of Synsepalum msolo were collected from
Bali at ‟Manchungˮ in Southern Cameroon, in April 2013. Identification
´ ´
was done by Dr BathelemyTchiengue, a botanist of the Cameroon Na-
tional Herberium, Yaounde, where voucher specimen (No 3849/SRFK)
was deposited.
2.2. General experimental procedure
2.3.1.1. Methanolysis of synsepaloside B (1). Synsepaloside B (3.5 mg)
was refluxed with 0.9 mol L-1 HCl in 82% aqueous MeOH (5 mL) for 20 h
at a temperature of 60 ◦C. The resulting solution was extracted three
times with n-hexane. The n-hexane solution was washed with water
(5 mL) and dried over anhydrous Na2SO4 then concentrated to yield the
fatty acid methyl ester (1.5 mg), identified as methyl hexadecanoate by
analysis of GC-MS. Methyl hexadecanoate also known as hexadecanoic
acid, 2-hydroxy- methylester was obtained as colorless oil, GC-MS: GC,
All reagents were purchased from Merck, Darmstadt, Germany and
are analytical grade. TLC was performed on silica gel 60 F254, 0.1 mm
thick (Merck) of size 20 × 20 cm. TLC spots were detected by fluores-
cence 254 nm or 366 nm and sprayed with 10% H2SO4 followed by
heating at 70 ◦C. 1H, 13C, DEPT, COSY, HMQC, HSQC, HMBC spectra
were recorded in deuterated solvent on either a Bruker Avance 600 MHz
spectrometer or on Varian 500 MHz instrument. Chemical shifts are
referenced to internal tetramethylsilane (δ = 0) and coupling constants J
are reported in Hz. The Low-resolution electrospray-ionization mass
spectrometry (ESI-MS) was carried out on a Micromass Quattro Micro
mass spectrometer, HRTOFESI-MS and TOFESI-MS on micrOTOF 10237,
Bruker compass Data Analysis 4.0. HRESI-MS data were obtained with
an LTQ Orbitrap Spectrometer (Thermo Fisher, Waltham, MA, USA)
equipped with an HESI-II source. IR spectra was recorded on a Perkin-
Elmer spectrophotometer. Melting points were recorded using SMP3
melting point apparatus and is uncorrected.
tR 17.416 min, m/z 286 (Cald. for C17H34O3, 286.25), EI-MS: m/z: 227 [
+.
M ꢀ C15H31O]+ (23), 71[C5H11
]
(40), 57 [C4H9]+. (90), see Supple-
mental Table S1 and supplementary data file.
2.3.2. Synsepaloside C (2)
White amorphous solid, mp 196.9 ◦C, [α D20
]
+ 13.6 (c 0.1, MeOH); 1H
NMR (DMSO‑d6, 600 MHz) and 13C NMR (DMSO‑d6, 150 MHz).
HRTOFESI-MS (positive-ion mode), m/z 866.6593 [M+Na]+, TOFESI-
MS (positive-ion mode), m/z 866.7 [M+Na]+, TOFESI-MS (negative-
ion mode) m/z 842.7 [M ꢀ H]- (Cald. for C48H93NO10, 843.6799). 1H-
NMR (δ, 600 MHz): 7.42 (d, 9.0, 2-NH), 5.38 (dd, 3.0, 13.2, H3′), 5.30
(m, H-4′), 4.90 (d, 3.9, 2′′-OH), 4.71 (s, 3-OH), 4.47 (t, 5.7, 6′′-OH), 4.28
(d, 5.7, 2′-OH), 4.14 (d, 7.8, H-1′′), 4.09 (m, H-2), 3.87 (m, H-2′), 3.85
(m, H-5), 3.82 (m, H-1a), 3.66 (m, H-1b), 3.66 (dd, 6.0, 11.4, H-6′′b),
3.45 (dd, 5.2, 11.4, H-6′′a), 3.38 (dd, 8.1, 8.7, H-2′′), 3.19 (m, H-5′′), 3.16
(m, H-3′′), 3.05 (m, H-4′′), 2.94 (dt, 3.6, 8.4, H-3), 1.94 (m, H-5′), 1.76
(m, H-6), 1.24 (br.s, H-6 to H-15 and H-6′ to H-23′), 1.23 (s, H-16, H-24′)
2.3. Extraction and isolation
The powdered dry leaves (0.3 kg) and stem bark (3.3 kg) of S. msolo
were extracted twice with CH2Cl2–CH3OH (1:1 v/v) at ambient tem-
perature for 2 days. The stem bark and leaves extract were concentrated
under reduced pressure to yield dark brown viscous syrups (86 g) and
black viscous syrup (100 g) respectively. 80 g of the stem bark extract
was subjected to silica gel column and eluted with mixtures of n-hexane,
ethyl acetate and methanol, in order of increasing polarities to give
about 146 fractions. The similar fractions were combined using TLC
analysis. Synsepaloside B 1 (6.4 mg), was directly obtained from frac-
tions 121–124 (EtOAc-MeOH 20%) and synsepaloside C 2 (8.7 mg) from
fractions 108–120. Aurantiamide acetate 7 (12 mg) and (ꢀ )-epicatechin
4 (30 mg) were directly obtained from fractions 82–87 and 100–106
respectively. 100 g of the leave extract was washed with n-hexane, ethyl
acetate and methanol to yield 16 g, 18 g and 48 g respectively. The ethyl
acetate fraction (18 g) was subjected over silica gel column and eluted
with increasing polarity of n-hexane, ethyl acetate and methanol to give
124 fractions. The combination of similar fractions yielded triacontanol
6 (5 mg) and (+)-catechin 3 (6 mg). Fractions 121–124 from EtOAc-
MeOH (80:20) was purified over Sephadex LH20 (100 MeOH) repeat-
edly to afford myricitrin 5 (19.2 mg). The compounds were identified
using spectroscopic methods (1D and 2D NMR, MS).
13
and 0.85 (t, 6.9, H-17, H-25′). C-NMR (δ, 150 MHz): 173.7 (C-1′),
130.2 (C-3′), 129.8 (C-5′), 103.4 (C-1′′), 74.0 (C-2′′), 73.4 (C-3), 73.4 (C-
3), 70.8 (C-4 and C-2′), 68.8 (C-1), 61.0 (C-6′′), 49.8 (C-2), 31.8 (C-5′),
31.2 (C-5), 29.2 (C-6 to C-15; C-6′ to C-23′), 22.0 (C-16, C-24′) and 13.8
(C-17, C-25′), see Supplemental Table S2.
2.4. Preparation of stock solution
The stock solution of each compound, ciprofloxacin, and fluconazole
were prepared in pure DMSO for a final concentration of 1 mg/mL. The
stock solutions were filtered with a 0.20 μm sterilized syringe and stored
at ꢀ 20 ◦C until use.
2.5. Bacterial and yeast strains
Six bacterial strains: Staphylococcus aureus ATCC 43300, Pseudo-
monas aeruginosa NR48582, Klebsiella pneumoneae ATCC 700603,
Escherichia coli ATCC 25922, Shigella flexneri NR518, Streptococcus
pneumoneae HM145 and 3 yeast strains: Candida albicans NR 29445,
Candida albicans NR 29451 and Candida albicans ATCC 29444 were
assayed. Isolates were obtained from Yaounde Centre Hospital,
Cameroon and the reference strains from BEI resources and the Amer-
ican Type Culture Collection Bacteria and yeast strains were cultivated
2.3.1. Synsepaloside B (1)
White amorphous powder, mp 170.5 ◦C, [α D
]
20+19.8 (c 0.1, MeOH);
IR νmax 3614, 3421, 2927, 1735, 1650, 1542, 1373, 1245, 1033 cmꢀ 1
;
1H NMR (CD3OD, 600 MHz) and 13C NMR(CD3OD, 150 MHz); HRESI-
MS (positive-ion mode) at m/z 880.68431 [M+H]þ, (calcd for
C
51H93NO10, 879.67995). 1H-NMR (δ, 600 MHz): 5.44 (m, H-16), 5.43
2