Synthesis of Molecular Knots
J. Am. Chem. Soc., Vol. 121, No. 5, 1999 999
1
orange. The reaction was monitored by TLC (SiO
2
; eluent, CH
2
Cl
2
/
techniques. The reaction could be monitored by H NMR, the chemical
3
% MeOH), which showed that the (chloroethoxy)ethanol had disap-
shifts of the cyclic olefins being sharply different from that of the
terminal olefins. After 16 h, the solvent was evaporated and the crude
peared. This was balanced by a further addition of this reactant (0.25
mL, 2.37 mmol) after 16 h of reaction. The reaction mixture was
maintained at 80 °C under argon for a further 6 h. DMF was then
evaporated (0.1 mmHg, 50 °C), and the residue (yellow brick color)
product was chromatographed (SiO
2
; CH
2
Cl
2
/0-1% MeOH) to give
pure 52 in a 74% yield (108 mg, 51 mmol), dark red solid (mp: >280
+
+
- +
6
°C). MS (FAB ): m/z 1965.3 ([M - PF ] , calcd 1965.5; 60%),
-
- +
was dissolved in a 1:1 H
decanted, and the aqueous phase was extracted 3 times with 200 mL
portions of CH Cl2. The organic phases were combined, dried over
MgSO , and filtered. The solvent was evaporated, and the yellow brick
solid was chromatographed (SiO ; eluent, hexane/0-80% CH Cl ) to
give 2 in a 97% yield (570 mg, 0.72 mmol), beige solid (mp: 172 °C).
2
O/CH
2
Cl
2
mixture. The organic phase was
1820.4 ([M - 2PF
6
+ e ] , calcd 1820.5; 36%), 910.1 ([M -
-
2+
-1
2PF
6
]
2 2
, calcd 910.3; 58%). UV-vis (CH Cl ), [λmax (nm) ꢀ (mol ‚
-
1
2
L‚cm )]: 236 (107 300); 250 sh (104 200); 279 sh (77 700); 325
1
4
(62 400); 520 (2880). H NMR (CDCl
3
, 200 MHz): 9.67 (s, 2H, H
a
);
3
2
2
2
8.35 (d, 4H, H
7
, J ) 8.4 Hz); 7.87 (m, 12H, H4-5-6); 7.62 (d, 4H, H ,
8
3
3
J ) 8.4 Hz); 7.12 (t, 2H, H
c
, J ) 7.8 Hz); 7.03 (m, 12H, Ho-b); 6.52
, J ) 8.4 Hz); 6.38 (m, 2.8H, Hcis-olefin); 6.24 (m, 1.2H,
trans-olefin); 5.73 (m, 8H, H ); 3.20-4.50 (m, 40H, HR-â-γ-δ-ꢀ). The
latter assignment was confirmed by 2D-NMR spectroscopy (ROESY).
Anal. Calcd for C108 : C, 61.45; H, 4.39; N, 5.31.
1
3
3
H NMR (CDCl
3
, 200 MHz): 9.52 (s, 1H, H
a
); 8.43 (dd, 2H, H
b
, J )
(d, 4H, H
3
4
3
7
H
.7 Hz, J ) 1.7 Hz); 8.22 (d, 4H, H
o
, J ) 8.9 Hz); 8.19 (broad s, 4H,
H
m
3
3
3-4); 8.06 (d, 2H, H
7
, J ) 8.5 Hz); 7.85 (d, 2H, H , J ) 8.5 Hz);
3
8
3
7
)
.58 (s, 4H, H5-6); 7.56 (t, 1H, H
c
, J ) 7.7 Hz); 6.76 (d, 4H, H
m
, J
, J ) 4.3
Hz); 3.3-3.6 (m, 8H, Hγ-δ); 2.89 (t, 2H, OH, J ) 5.5 Hz). Anal.
Calcd for C50 : C, 75.55; H, 5.32; N, 7.05. Found: C, 75.22;
H, 5.37; N, 6.98.
2 12 8 12 2
H92Cu F N O P
3
3
8.9 Hz); 3.94 (t, 4H, H
R
, J ) 4.3 Hz); 3.66 (t, 4H, H
â
Found: C, 60.96; H, 4.04; N, 4.88.
Preparation of 62+. The dicopper(I) trefoil knot 52+ (95 mg, 45
3
H N O
42 4 6
mmol) was dissolved in a 1:1 mixture of CH Cl /EtOH (100 mL). The
2
2
catalyst (Pd/C, 5% mol in Pd) was then added. At room temperature
and under vigorous stirring, the solution was maintained under a
hydrogen atmosphere for 16 h. The reaction could also be monitored
Preparation of 3. A degassed solution of 2 (565 mg, 0.72 mmol)
in THF (100 mL) was added dropwise at 0 °C and under argon to a
suspension of NaH (3.6 mmol) in THF (200 mL). The mixture turned
yellow. Its temperature was allowed to rise up to room temperature
before allyl bromide (25 mL, 72 mmol) was added via a syringe. The
mixture was then heated to reflux. The reaction was monitored by TLC
1
by H NMR, since the signal of the olefin progressively disappeared.
After filtration on alumina and evaporation of the solvent, the pure
reduced knot 62 was obtained in a quantitative yield (95 mg, 45 mmol)
+
as a dark red solid (mp: >280 °C). UV-vis (CH
2
Cl
2
) [λmax (nm) ꢀ
-
1
-1
(
2 2 2
SiO ; eluent, CH Cl /5% MeOH). More allyl bromide (25 mL, 72
(mol ‚L‚cm )]: 235 (109 800); 251 sh (104 200); 280 sh (75 700);
1
mmol) was added after 40 h of reaction. The reaction mixture was
kept under reflux and under argon for 70 h. The temperature was then
brought down to 0 °C, and excess NaH was neutralized by adding small
portions (5 mL) of absolute ethanol, until there was no more gas formed.
The solvent was then evaporated, and the residue taken up in a 1:1
3
325 (63 200); 513 (3100). H NMR (CDCl , 200 MHz): 9.71 (s, 2H,
3
3
a 7
H ); 8.37 (d, 4H, H , J ) 8.4 Hz); 7.93 (AB, 8H, H5-6, J ) 8.8 Hz);
3
3
7.90 (d, 4H, H
4
, J ) 8.4 Hz); 7.62 (d, 4H, H
8
, J ) 8.4 Hz); 7.24 (t,
3
3
2H, H , J ) 7.8 Hz); 7.04 (m, 12H, Ho-b); 6.58 (d, 4H, H
Hz); 5.72 (d, 8H, H
c
3
, J ) 8.4
, J ) 8.6 Hz); 3.30-4.00 (m, 40H, HR-â-γ-δ-ꢀ).
3
m
Preparation of Free Ligand 7. To a solution of 62 (50 mg, 23
mmol) in refluxing wet acetonitrile (100 mL) was added potassium
cyanide (0.5 g, large excess). The mixture was stirred at 80 °C for 4 h,
during which the dark red color of the copper(I) complex progressively
disappeared. The solvent was evaporated, and the residue was dissolved
in dichloromethane. The crude mixture was washed 3 times with 0.1
+
H
2
O/CH
phase was extracted 3 times with 200 mL portions of CH
organic phases were combined, dried over MgSO , filtered, and
evaporated to dryness. The yellow brick solid was chromatographed
Cl
2 2
mixture. The organic phase was decanted, and the aqueous
2
Cl2. The
4
(SiO
2
; eluent, hexane/0-100% CH
2 2
Cl ) to give 3 in a 100% yield
1
(627 mg, 0.72 mmol), beige-orange solid (mp: 135 °C). H NMR
3
(
CDCl
3
, 200 MHz): 9.65 (s, 1H, H
a
); 8.66 (dd, 2H, H
b
, J ) 7.7 Hz,
4
M ammonia in water, dried over MgSO , and filtered to give 7 in a
4
3
3
1
J ) 1.5 Hz); 8.42 (d, 4H, H
Hz); 8.26 (d, 2H, H
o
, J ) 8.8 Hz); 8.34 (d, 2H, H
3
, J ) 8.5
, J ) 8.5 Hz); 7.98
, J ) 7.8 Hz); 7.67 (s, 4H,
quantitative yield (39 mg, 23 mmol). Its H NMR spectrum is very
complex and shows a mixture of conformers in reptation.
3
3
4
, J ) 8.5 Hz); 8.15 (d, 2H, H
7
3
3
(d, 2H, H
8
, J ) 8.5 Hz); 7.80 (t, 1H, H
c
Remetalation was achieved by adding a degassed solution of Cu-
(MeCN) PF (5 mg, 24 mmol) in acetonitrile (20 mL) to a solution of
3
3
H
5-6); 7.02 (d, 4H, H
m
, J ) 8.8 Hz); 5.93 (ddt, 2H, Holefin, Jtrans
)
4
6
3
3
3
1
1
7.2 Hz, Jcis ) 10.3 Hz, J ) 5.6 Hz); 5.27 (m, 2H, Holefin-trans, J )
7.2 Hz, J ) 1.3 Hz, Jgem ∼ 1 Hz); 5.17 (m, 2H, Holefin-cis, J ) 10.3
ligand 7 (39 mg, 23 mmol) in dichloromethane (20 mL), at room
temperature and under argon. The dark red solution was stirred for 1
h. The solvent was then evaporated, and the residue was washed with
4
3
4
3
Hz, J ) 1.3 Hz, Jgem ∼ 1 Hz); 4.17 (t, 4H, H
H, H
m, 4H, H
H, 5.76; N, 6.40. Found: C, 76.62; H, 6.10; N, 6.36.
R
, J ) 5.2 Hz); 4.02 (td,
3
4
3
2+
4
(
ꢀ
, J ) 5.6 Hz, J ) 1.3 Hz); 3.88 (t, 4H, H
â
, J ) 5.2 Hz); 3.74
water and dried under vacuum to give knot 6 in a quantitative yield
γ
); 3.61 (m, 4H, H ). Anal. Calcd for C56
δ
H
50
N
4
O
6
: C, 76.87;
(50 mg, 23 mmol).
Preparation of 9. A degassed solution of 8 (2 g, 7.66 mmol) in
anhydrous THF (250 mL) was cooled to -78 °C. While this temperature
was maintained, a freshly prepared LDA solution (7.7 mmol in 30 mL
THF) was added. The reaction mixture progressively turned from deep
red to purple. It was stirred for a further 2 h at -80 °C, after which the
temperature was allowed to rise to 0 °C and brought down to -78 °C
again. Dibromoethane (6.44 g, 34.3 mmol), previously filtered over
basic alumina, was then added via syringe. Once the addition was
finished, the mixture was left at -78 °C for 4 h, after which it was
allowed to heat up to room temperature. After 4 h of stirring at room
temperature, the emerald green solution was hydrolyzed by 200 mL of
water and turned orange. After evaporation of the THF and extraction
Preparation of 42+. A degassed solution of copper(I) hexafluoro-
phosphate (280 mg, 0.69 mmol) in acetonitrile (70 mL) was added at
room temperature and under argon to a solution of ligand 3 (607 mg,
0
.69 mmol) in dichloromethane. The resulting dark red mixture was
stirred for 1 h. The solvents were then evaporated and the residue
washed with water and dried under vacuum. The pure double helix
2
+
4
0
4
was obtained in a quantitative yield as a dark red solid (751 mg,
1
.69 mmol). H NMR (CDCl
H, H
3
, 200 MHz): 9.64 (s, 2H, H
a
); 8.35 (d,
3
3
7
, J ) 8.4 Hz); 7.94 (AB, 8H, H5-6, J ) 8.8 Hz); 7.87 (d, 4H,
3
3
3
H
7
4
, J ) 8.4 Hz); 7.62 (d, 4H, H
8
, J ) 8.4 Hz); 7.12 (t, 2H, H
c
, J )
3
3
.8 Hz); 7.03 (d, 8H, H
o
, J ) 8.6 Hz); 6.90 (dd, 4H, H
b
, J ) 7.8 Hz,
4
3
J ) 1.2 Hz); 6.52 (d, 4H, H
3
, J ) 8.4 Hz); 5.99 (dtd, 4H, Holefin
,
with CH
was evaporated. The crude mixture was chromatographed (Al
eluent, hexane/CH Cl 10-70%) to give pure 9 in a 28% yield (573
mg, 1.1 mmol), beige solid (mp: 187 °C). H NMR (CDCl
2 2 4
Cl , the organic layer was dried over MgSO , and the solvent
3
3
3
3
J
trans ) 17.2 Hz, Jcis ) 10.3 Hz, J ) 5.6 Hz); 5.72 (d, 8H, H
m
, J )
.6 Hz); 5.31 (m, 2H, Holefin-trans, J ) 17.2 Hz, J ) 1.3 Hz, Jgem ∼ 1
Hz); 5.20 (m, 2H, Holefin-cis, J ) 10.3 Hz, J ) 1.3 Hz, Jgem ∼ 1 Hz);
.07 (dt, 8H, H
2 3
O ;
3
4
8
2
2
3
4
1
3
, 200
MHz): 8.51 (m, 8H, H6-6′′-3′-5′); 8.39 (d, 4H, H3-3′′, J ) 7.8 Hz);
3
4
3
4
ꢀ
, J ) 5.6 Hz, J ) 1.3 Hz); 3.10-3.70 (m, 32H,
7.92 (t, 2H, H4′, 3J ) 7.9 Hz); 7.61 (AB, 4H, H4-4′′, J ) 7.8 Hz, J )
2.1 Hz); 3.07 (s, 4H, CH ); 2.40 (s, 6H, CH ). Anal. Calcd for
34 28 6
C H N : C, 78.43; H, 5.42; N, 16.14. Found: C, 79.05; H, 4.91; N,
3
4
H
R-â-γ-δ).
Preparation of the Dicopper(I) Trefoil Knot 52+. Double helix
2
3
42
+
(150 mg, 69 mmol) was dissolved in freshly distilled and degassed
dichloromethane (5 mL) at room temperature to obtain a 0.01 M
solution. The catalyst (Grubbs ruthenium(II) carbene,14 6 mg, 5% mol)
dissolved in dichloromethane (2 mL) was then added using Schlenk
15.70.
Preparation of 104+. A solution of dimethylbis(terpyridine) 9 (31
mg, 60 mmol) dissolved in hot acetone (25 mL) was added under argon,