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502 Journal of Medicinal Chemistry, 2006, Vol. 49, No. 5
Letters
important for formation and Schiff base stabilization.10 Surpris-
ingly, no frame was found suitable for nucleophilic attack in
the rabbit muscle aldolase simulation of the Michaelis complex
with 9 and is consistent with poor reactivity by 9 in the
mammalian isozyme. Although active sites differ in one residue
(4) Sjoerdsma, A.; Schechter, P. J. Chemotherapeutic implication of
polyamine biosynthesis inhibition. Clin. Pharmacol. Ther. 1984, 35,
287-300.
(5) Van Nieuwenhove, S. Clinical evaluation of eflornithine in Trypa-
nosomiasis. Trans. R. Soc. Trop. Med. Hyg. 1985, 79, 692-696.
(6) (a) Visser, N.; Opperdoes, F. R. Glycolysis in Trypanosoma brucei.
Eur. J. Biochem. 1980, 103, 623-632. (b) Verlinde, C. L.; Hannaert,
V.; Blonski, C.; Willson, M.; Perie, J. J.; Fothergill-Gilmore, L. A.;
Opperdoes, F. R.; Gelb, M. H.; Hol, W. G.; Michels, PAM.
Glycolysis as a target for the design of new anti-trypanosome drugs.
Drug Resist. Updates 2001, 4, 50-65.
(Gly302 in the mammalian enzyme being replaced by a bulkier
Ala312 in T. brucei aldolase), analysis of dynamical trajectories
did not reveal conformational differences in the positioning of
9
with respect to CR atoms of these residues, suggesting that
this amino acid change may not account for the observed
reactivity differences. Reaction of 9 with the malarial aldolase
whose active site composition is identical to that of mammalian
aldolase would corroborate this conclusion.
(7) Opperdoes, F. R.; Baudhuin, P.; Coppens, J.; De Roe, C.; Edwards,
S. W.; Weijers, P. J.; Misset, O. Purification, morphometric analysis
and characterization of the glycosomes of the protozoan hemofla-
gallate Trypanosoma brucei. J. Cell Biol. 1984, 98, 1178-1184.
(8) Shu, B.; Barker, R. Fluorescence studies of the binding of alkyls
The reactant configuration in Figure 4 places the γ-OH of
Ser48 within van der Waals contact of the 9 carbonyl.
Intriguingly, Ser48 oriented opposite and nearly perpendicular
to the aldehyde would be well-positioned to interact with the
nascent iminium ion and could be the residue that reacts with
the Schiff base, leading to the final intermediate in the slow
binding inhibition mechanism.
In conclusion, we have synthesized a selective time-dependent
inhibitor of T. brucei aldolase that does not significantly inhibit
mammalian aldolase activity. We identified Lys116 as being
responsible for Schiff base formation. Molecular dynamics
suggest that differences in stabilization of reaction geometries
are responsible for the differential reactivity of 9 with T. brucei
aldolase compared to rabbit muscle aldolase and that Ser48 is
most likely the reactive residue in the second step of the
inhibition mechanism. MS experiments performed on L. mexi-
cana aldolase support these conclusions. Compound 9 and its
and aryl phosphates to rat muscle aldolase. J. Biol. Chem. 1971, 246,
7041-7045.
(
9) (a) Blonski, C.; Gefflaut, T.; P e´ ri e´ , J. Effects of chirality and
substituents at carbon 3 in dihydroxyacetone-phosphate analogues
on their binding to rabbit muscle aldolase. Bioorg. Med. Chem. 1995,
3, 1247-1253. (b) Gefflaut, T.; Blonski, C.; Perie, J. Slow reversible
inhibitions of rabbit muscle aldolase with substrate analogues:
synthesis, enzymatic kinetics and UV difference spectroscopy studies.
Bioorg. Med. Chem. 1996, 4, 2043-2054. (c) Gefflaut, T.; Blonski,
C.; P e´ ri e´ , J.; Willson, M. Class I aldolases: substrate specificity,
mechanism, inhibitors and structural aspects. Prog. Biophys. Mol.
Biol. 1995, 63, 301-340.
(
10) (a) Blonski, C.; Moissac, D.; Perie, J.; Sygusch, J. Inhibition of rabbit
muscle aldolase by phosphorylated aromatic compounds. Biochem.
J. 1997, 323, 71-77. (b) Dax, C.; Coincon, M.; Sygusch, J.; Blonski,
C. Hydroxynaphthaldehyde phosphate derivatives as potent covalent
Schiff base inhibitors of fructose-1,6-bisphosphate aldolase. Bio-
chemistry 2005, 44, 5430-5443.
11) (a) Shoesmith, J. B.; Haldane, J. Condensation of diphenyl forma-
midine with phenol. Part I. A new synthesis of â-resorcy-aldehyde.
J. Chem. Soc. 1923, 123, 2704-2707. (b) Shoesmith, J. B.; Aldane,
J. Condensation of diphenyl formamidine with phenol. Part II. The
general nature of the reaction. J. Chem. Soc. 1924, 125, 2405-2407.
12) (a) Stowell, J. K.; Wildlanski, T. S. A new method for the
phosphorylation of alcohols and phenols. Tetrahedron Lett. 1995,
(
“
prodrug” analogues will be tested in in vitro cultures of T.
brucei to determine if it causes growth retardation.
(
Acknowledgment. This work was funded by the European
Commission, through its programs INCO-DC (Contract IC18-
CT97-0220) and INCO-DEV (Contract ICA4-CT-2001-10075)
to C.B. and P.A.M.M., and by a grant from the National
Scientific Research and Engineering Council (NSERC) of
Canada to J.S. We thank the R e´ seau Qu e´ b e´ cois de Calcul de
Haute Performance (RQCHP) for computational resources for
the molecular dynamical simulations. The authors are grateful
to Professor J. Poupaert, Universit e´ Catholique de Louvain,
Brussels, Belgium, for helpful discussions.
36, 1825. (b) Ladame, S.; Claustre, S.; Willson, M. Selective
phosphorylation on primary alcohols of unprotected polyols. Phos-
phorus, Sulfur Silicon Relat. Elem. 2001, 174, 37-47.
(
13) Ginsburg, A.; Mehler, A. H. Specific anion binding to fructose
bisphosphate aldolase from rabbit muscle. Biochemistry 1966, 5,
2623-2634.
(
14) McCurdy, C. R.; Le Bourdonnec, B.; Metzger, T. G.; El Kouhen,
R.; Zhang, Y.; Law, P. Y.; Portoghese, P. S. Naphthalene dicarbox-
aldehyde as an electrophilic fluorogenic moiety for affinity label-
ling: application to opioid receptor affinity labels with greatly
improved fluorogenic properties. J. Med. Chem. 2002, 45, 2887-
2890.
1
(15) (a) Tobias, P. S.; Kallen, R. G. Kinetics and equilibria of the reaction
of pyridoxal 5′-phosphate with ethylenediamine to form Schiff bases
and cyclic geminal diamines: evidence for kinetically competent
geminal diamine intermediates in transimination sequences. J. Am.
Chem. Soc. 1975, 97, 6530-6539. (b) McQuate, R. S.; Leussing, D.
L. Kinetic and equilibrium studies on the formation of zinc(II)
salicylaldehyde Schiff base derived from ethylenediamine and 1,3-
diaminopropane. J. Am. Chem. Soc. 1975, 97, 5117-5125.
Supporting Information Available: Synthetic protocols, H
and 13C NMR shifts, MS data and elemental analysis results of
synthesized compounds, molecular biology and enzymology pro-
cedures, and molecular modeling. This material is available free
of charge via the Internet at http://pubs.acs.org.
References
(
1) World Health Organization report on Tropical Diseases Research
TDR) program (2002).
(16) (a) Weiner, S. J.; Kollman, P. A.; Case, D. A.; Singh, U. C.; Ghio,
C.; Alagona, G.; Profeta, S. J.; Weiner, P. A. New force field for
molecular mechanical simulation of nucleic acids and proteins. J.
Am. Chem. Soc. 1984, 106, 765-784. (b) Weiner, S. J.; Kollman, P.
A.; Nguyen, D. T.; Case, D. A. An all atom force field for simulation
of proteins and nucleic acids. J. Comput. Chem. 1986, 7, 230-252.
(
(
2) (a) Howells, R. E. The modes of action of anti-protozoal drugs.
Parasitology 1985, 90, 687-703. (b) Neujean, G. Chemotherapy and
chemoprophylaxis of sleeping sickness caused by Trypanosoma
gambiense. ReV. Med. Liege 1959, 14, 5-13.
(
3) Milord, F.; Pepin, J.; Loko, L.; Ethier, L.; Mpia, B. Efficacy and
toxicity of eflornithine for treatment of Trypanosoma brucei gam-
biense sleeping sickness. Lancet 1992, 340, 652-655.
JM050237B