Journal of Natural Products
Note
extraction and evaporation, the water phase (approximately 50 mL)
was subjected to open-column chromatography [column diameter 7.3
cm, length 15 cm, Cosmosil 75C18-OPN materials, (Nacalai Tesque,
Kyoto, Japan)] and eluted with MeOH−H2O (0:100 → 100:0 v/v) to
afford 13 fractions (Frs. 1 and 2, 0% MeOH; Frs. 3 and 4, 5% MeOH;
Frs. 5 and 6, 10% MeOH; Frs. 7 and 8, 20% MeOH; Frs. 9 and 10,
40% MeOH; Frs. 11 and 12, 60% MeOH; Fr. 13, 100% MeOH; 500
mL solvent for each elution). Next, the fractions were analyzed with a
Shimadzu LC-MS-2020 system. The protonated molecular ion of
asparaptine (1) was observed at m/z 307 [M + H]+ and was mainly
found in fraction 6 (10% MeOH). After evaporation, fraction 6 (ca. 12
mL) was purified using a mass-directed fractionation system, the
preparative LC−PDA−MS system (Shimadzu), to yield 61 mg of
asparaptine (1). The purification was performed under the following
conditions: LC-20AP pump A and B; Unison UK-C18 column [150 ×
10 mm i.d.; 3 μm (Imtakt, Kyoto, Japan)]; column oven temperature
of 40 °C, linear gradient solvents at a flow of 3 mL/min [solvent A:
water (0.1% HCOOH); B: acetonitrile (0.1% HCOOH) 5% B (0−2
min), 5−8% B (2−3 min), 8−10% B (3−21 min), 10−100% B (21−
22 min), 100% B (22−27 min), 100−5% B (27−28 min), 5% B (28−
35 min)]; a makeup flow (LC-20AD pump C, solvent B, 0.2 mL/min)
was used to split the LC eluent into an LC-MS-2020 mass
spectrometer at a ratio of 1:150; electrospray ionization mass spectra
were recorded through a range of m/z 100−1000 in the positive-
ionization mode with a probe voltage of 4.5 kV, nebulizing gas flow of
1.5 L/min, “DL” temperature of 250 °C, heat block temperature of
the MS spectrum. However, profiling results of the redundant
S-metabolites could be good markers for isolation of target
metabolites. S-Omics and the discovery of asparaptine (1) will
present opportunities to find new S-metabolites with biological
activities potentially beneficial to humans.
EXPERIMENTAL SECTION
■
General Experimental Procedures. The optical rotation was
measured using a JASCO P-1020 polarimeter. NMR spectra were
recorded using a Bruker 600 MHz spectrometer with a DCH
CryoProbe (Bruker BioSpin GmbH, Rheinstetten, Germany). MS and
MS/MS data were recorded using a Bruker solariX 7.0 T FTICRMS
instrument (Bruker Daltonik GmbH, Bremen, Germany). Purification
was performed on a preparative LC−PDA−MS system comprising
two LC-20AP binary gradient pumps, an LC-20AD makeup pump, an
SPD-M20A photodiode array detector, an SIL-10AP autosampler, a
CTO-20A column oven, an LC-MS-2020 single quadrupole mass
spectrometer, an FRC-10A fraction collector, and a CBM-20A module
(Shimadzu, Kyoto, Japan). N-Succinyl-L-proline was purchased from
Sigma-Aldrich Co., LLC (Saint Louis, MO, USA), and captopril,
nicotianamine, D-arginine, L-arginine, and L-aspartic acid were
purchased from Wako Pure Chemical Industries, Ltd. (Osaka,
Japan). Asparagusic acid was purchased from Shanghai Haoyuan
Chemexpress Co., Ltd. (Shanghai, China). Isolated asparagusic acid
glucose ester was used in this study.
200 °C, and drying gas flow of 20.0 L/min.
MS and MS/MS spectra were recorded using Hystar 3.0 software
(Bruker Daltonik GmbH). Data were processed using DataAnalysis 4.0
(Bruker Daltonik GmbH). The raw files were converted to netCDF.
Peak picking of S-ions was performed using the theoretical mass
1
Asparaptine (1): white powder; [α]20 +6.5 (c 0.03, H2O); H
D
NMR (600 MHz, in D2O containing 0.01% DDS-d6, 25 °C) δ 4.21
(1H, dd, J = 8.2, 5.0 Hz, H-8), 3.46 (1H, m, H-5a), 3.44 (1H, m, H-4),
3.42 (1H, m, H-3a), 3.34 (1H, m, H-3b), 3.28 (1H, m, H-5b), 3.21
(2H, t, J = 6.9 Hz, H-11), 1.86 (1H, m, H-9a), 1.72 (1H, m, H-9b),
1.61 (2H, m, H-10); 13C NMR (150 MHz, in D2O containing 0.01%
DDS-d6, 25 °C) δ 181.2 (C, C-14), 176.7 (C, C-6), 159.5 (C, C-13),
57.6 (CH, C-8), 54.0 (CH, C-4), 45.4 (CH2, C-5), 44.6 (CH2, C-3),
43.3 (CH2, C-11), 31.5 (CH2, C-9), 27.2 (CH2, C-10); FTICRMS m/
z 307.08931 ([M + H]+, calcd for C10H19N4O3S2, 307.08930).
Hydrolysis of Asparaptine (1). Asparaptine (1) (1.9 mg) was
suspended in 6.0 N HCl (2.0 mL) and heated at 85 °C for 8 h. The
acid hydrolysate was dried under N2 and dissolved in H2O−MeOH−
HCOOH (30:70:0.02). The sample was then analyzed by HPLC
under the following conditions: LC-20AD pump A and B; Astec
CHIROBIOTIC T column (150 × 2.1 mm i.d., 1024AST, Sigma-
Aldrich); column oven temperature of 25 °C; solvent H2O−MeOH−
HCOOH (30:70:0.02) at a flow rate of 0.2 mL/min; UV detection at a
wavelength of 200 nm. D- and L-Arginine showed retention times at
11.1 and 8.1 min, respectively. L-Arginine in the hydrolysate was
identified by comparing its retention time with that of an authentic
sample.
Quantification of S-Metabolites in Asparagus Using LC−
QTOF−MS. The fresh samples were extracted with 5 μL of 80%
MeOH containing 2.5 μM lidocaine and 10-camphor sulfonic acid per
mg fresh weight using a mixer mill with zirconia beads for 7 min at 18
Hz and 4 °C. After centrifugation for 10 min, the supernatant was
filtered using an HLB μElution plate (Waters). Extract solutions (1
μL) were analyzed using LC−QTOF−MS (LC, Waters Acquity
UPLC system; MS, Waters Xevo G2 Q-TOF). Analytical conditions
were as follows: LC column, Acquity bridged ethyl hybrid C18 (1.7 μm,
2.1 mm × 100 mm, Waters); solvent system, solvent A (water
including 0.1% formic acid) and solvent B (acetonitrile including 0.1%
formic acid); gradient program, 99.5% A/0.5% B at 0 min, 99.5% A/
0.5% B at 0.1 min, 20% A/80% B at 10 min, 0.5% A/99.5% B at 10.1
min, 0.5% A/99.5% B at 12.0 min, 99.5% A/0.5% B at 12.1 min and
99.5% A/0.5% B at 15.0 min; flow rate, 0.3 mL/min at 0 min, 0.3 mL/
min at 10 min, 0.4 mL/min at 10.1 min, 0.4 mL/min at 14.4 min, and
0.3 mL/min at 14.5 min; column temperature, 40 °C; MS detection:
capillary voltage, +3.0 keV, cone voltage, 25.0 V, source temperature,
120 °C, desolvation temperature, 450 °C, cone gas flow, 50 L/h;
desolvation gas flow, 800 L/h; collision energy, 6 V; mass range, m/z
100−1500; scan duration, 0.1 s; interscan delay, 0.014 s; data
difference (1.995
0.001 Da) between 32S-monoisotopic ions and
their 34S-substituted counterparts and using the natural abundance of
34S (4.21 5%) with the appropriate Web-based analytical tool for
heteroatom-containing metabolites, which will be publicly available
after reaching the final step. S-Ions were extracted under the condition
that the retention time was 1−20 min. Peak alignment was conducted
using Progenesis CoMet (Nonlinear Dynamics, Durham, NC, USA).
Signal intensity values of all ions were divided by the signal intensity
value of the internal standard lidocaine for normalization. To obtain S-
ions with redundant signal intensity, ions with an intensity less than
html) was used for hierarchical cluster analysis. Pearson’s correlation
analysis was used in this study. The elemental composition was
calculated using SmartFormula (Bruker Daltonik GmbH) with the
following limiting conditions: <1 mDa; C0−50H0−100N0−5O0−50S0−5
charge, 1.
;
Plant Material. Commercially available spears of Asparagus
officinalis produced in Japan (Hokkaido for both S-omics using
LC−FTICRMS and quantification analysis using LC−QTOF−MS,
Tochigi for isolation) were used in this study. Voucher specimens
[green asparagus (Hokkaido), APGDo-FD; purple (Hokkaido),
APPDo-FD; white (Hokkaido), APWDo-FD; and green (Tochigi),
APGTo-FD] were deposited at RIKEN Freeze-dried Collection
(RIKEN CSRS). Vegetables were purchased at U-Takaraya
(Arakawa-ku, Tokyo, Japan). Arabidopsis thaliana and Oryza sativa
L. were grown in a plant growth room.22,23 All samples were
immediately frozen, lyophilized, and ground and then stored at room
temperature with silica gel until use.
Extraction and Isolation. Extraction of metabolites for LC−
FTICRMS analysis was performed as previously described.10 The
column was exchanged for Xselect CSH Phenyl-Hexyl (3.5 μm, 2.1
mm × 150 mm, Waters, Milford, MA, USA).
Fresh asparagus spears (970.7 g) were cut into 2−3 mm pieces with
a ceramic knife. After flash-freezing in liquid nitrogen, the pieces were
freeze-dried and crushed. The lyophilized asparagus powder (57.5 g)
was extracted three times with 80% methanol (3 L × 3) overnight at
room temperature. The solvent was evaporated until a small volume of
water solution was left (approximately 400 mL). The solution was
sequentially extracted with n-hexane (400 mL × 3) and chloroform
(400 mL) to remove lipid and chlorophyll. After the liquid−liquid
D
J. Nat. Prod. XXXX, XXX, XXX−XXX