760 Journal of Natural Products, 2006, Vol. 69, No. 5
Kim et al.
result in amorphadiene with deuterium at C-6 and C-10. Stereo-
chemical considerations also favor pathway a over b, because only
the axial hydrogen atom is allowed to migrate in the process of
suprafacial hydride shift; therefore, the ring conformation of
intermediate 3 would dictate which hydrogen is to migrate. If the
hydrogen atom Ha were in an axial orientation, allowing 1,3-hydride
shift in the intermediate 4, the side chain would be at an equatorial
position (Figure 4). Model building demonstrated that this equatorial
disposition of the side chain enabled the intermediate to fold into
the appropriate conformation needed for the second ring closure.
On the other hand, if Hb were to migrate via 1,2-hydride shift, the
conformation of the intermediate 3a would be such that Hb and
the side chain point in the opposite axial directions. Molecular
modeling showed that the axial conformation of the side chain in
intermediate 4 is not favorable for the completion of the second
ring closure by p-orbital overlap. Therefore, the final labeling pattern
at H-1 and H-10 of amorphadiene derived from [1,1-2H2]farnesyl
diphosphate enables differentiation between pathways a and b, with
pathway a additionally supported by the conformational analysis
of the putative reaction intermediates. Indeed, one of the labels
was found at H-6 and another at H-10 in support of pathway a.
The above conclusion was supported through cryptochemistry
of pro-R (Hb) and pro-S (Ha), H-1 hydrogens that gave direct
support to the detailed cyclization mechanism (Figure 4). This work
reconfirmed the stereochemical course of the reaction presented
by Picaud et al., who also employed the chirally deuterated farnesyl
diphosphate to probe the mechanism.15 In the cyclization of farnesyl
diphosphate, isomerization of farnesyl diphosphate into nerolidyl
diphosphate (2, NDP) is a prerequisite for correct 1,6-ring closure.
An alternative to the isomerization is the rotation of the C-2-C-3
bond after the formation of an allylic farnesyl cation-pyrophosphate
anion ion pair, giving conformation 2 with Hb (pro-R H-1HR of 1)
cis to the main chain. Attack of C-1 at the si-face of C-6 positions
Ha-1 at the axial direction and the side chain in the desirable
equatorial position of 3. This axial disposition of Ha-1 enables
suprafacial transfer of the hydrogen to the empty p-orbital at C-7
of 3. The migration results in the R configuration at C-7 on 5, which
is the correct C-7 configuration of amorphadiene 6. The migration
of a hydrogen atom introduces the positive charge at C-1 with the
p-orbital in the axial direction (4). The final ring closure between
C-1 and C-10 in structure 4 leads to the desirable cis-decalin
configuration in compound 6, amorpha-4,11-diene.
Figure 3. 1H NMR spectra of amorphadienes: (A) authentic
amorpha-4,11-diene; (B) from [1,1-2H2]farnesyl diphosphate; (C)
from (1S)-[1-2H]farnesyl diphosphate; (D) from (1R)- [1-2H]farnesyl
diphosphate.
labeling at H-6 and H-10. Collapse of the H-15 signal at δ 0.88
2
into a singlet further supported the labeling of H-10 with H. In
amorphadiene derived from (1S)-[1-2H]farnesyl diphosphate, the
characteristic H-10 signal at δ 1.40 disappeared (Figure 3C). On
1
the other hand, the H NMR spectrum of amorphadiene derived
from (1R)-[1-2H]farnesyl diphosphate was devoid of a H-6 signal
at δ 2.55 (Figure 3D). These results unambiguously indicated that
HS-1 (Ha-1) of farnesyl diphosphate migrated to H-10 of amorpha-
diene, while HR-1 (Hb-1) remained at its position to label amor-
phadiene H-6.
Deduction of Cyclization Mechanism. Brodelius’ group pro-
posed a cyclization mechanism of ADS based on the structure of
ADS reaction byproducts; formation of compounds with a bisabo-
lane skeleton such as R-bisabolol, â-sesquiphellandrene, and
zingiberene as minor byproducts led to the proposal that the 1,6-
closure involving a bisabolyl carbocation intermediate precedes the
1,10-closure (pathway a, Figure 1).14,19 The group recently con-
cluded that 1,6-ring closure is the first event and 1,3-hydride shift
of the original HS-1 of farnesyl diphosphate is operating in the ADS
action,15 based on the experiment involving farnesyl diphosphate
asymmetrically labeled at C-1 with deuterium. Many sesquiterpene
cyclases such as CDS from cotton are known to operate through
the germacryl mechanism (pathway c, Figure 1).11
Deuterium Exchange in 2H2O. Amorphadiene derived from the
incubation of farnesyl diphosphate and ADS in deuterium oxide
showed a molecular ion at m/z 205, which indicated the incorpora-
tion of one deuterium atom from the reaction medium (Supporting
Information). The labeling pattern observed in the mass spectrum
was indistinguishable from those of amorphadienes derived from
singly labeled farnesyl diphosphates; therefore, the position of the
label could not be determined through mass spectrometric analysis.
The activity of ADS dramatically decreased when changing the
To establish the correct ADS mechanism from among the three
possibilities (Figure 1), migration of farnesyl diphosphate H-1
during cyclization was traced using deuterium-labeled farnesyl
diphosphates as substrate. The site of deuteration in the resulting
2
medium from H2O to H2O. Therefore, a large-scale preparation
2
2
labeled amorphadienes could be directly observed by H NMR
of amorphadiene in H2O for NMR analysis was not practical.
spectra of high signal-to-noise ratio (Figure 2). Even with only the
labeling pattern of amorphadiene from [1,1-2H2]farnesyl diphosphate
at hand, differentiation of the alternative mechanisms became
possible. Retention of two deuterium atoms at C-1 of amorphadiene
6 easily eliminated pathway c from the possibilities, because, with
pathway c in operation, one of the labels at farnesyl diphophate
H-1 would migrate to amorphadiene C-11 through 1,3-shift (7,
Figure 1) before being eliminated in the process of double-bond
formation at the isopropenyl side chain.
Bisabolyl carbocation intermediate 3 (Figure 1, pathway a)
arising from 1,6-closure would undergo hydride shift through either
one direct suprafacial 1,3-shift of axial Ha-1 to C-7 (4, pathway a,
Figure 1) or two suprafacial 1,2-hydride shifts, axial Hb-1 to C-6
and H-6 to C-7 (4a, pathway b), resulting in the correct cis-decalin
configuration at C-1 and C-6 of 6. Hence, only pathway a would
However, because amorphadiene obtained from deuterated
farnesyl diphosphate retains the deuterium label at H-6 and H-10
in H2O, the position of deuterium exchange would not be H-6 or
2
H-10. One of the possible mechanisms, though unprecedented,
compatible with deuterium incorporation from the reaction medium
is presented in Figure 4. In this mechanism, the intermediate 4 loses
allylic H-6 to generate 2,6,10-bisabolatriene 8, which would pick
up one deuterium from the 2H2O medium on return. A large kinetic
isotope effect is expected in the process. Indeed, deuterium
incorporation was not observed in the medium even with up to
2
75% H2O.
Experimental Section
General Experimental Procedures. Protein concentration was
determined using the Bio-Rad protein assay kit according to the