10.1002/cmdc.201800088
ChemMedChem
FULL PAPER
1JP=86 Hz), 33.8, 30.7, 29.8 (d, 2JP=16.5 Hz), 28.5, 28.0, 24.5, 21.7 (d,
3JP=4 Hz), 20.1 (d, 1JP=50 Hz). ESI-MS [M]+: m/z 419.5.
29.4, 26.9, 23.5 (d, 3JP=4.4 Hz), 22.9, 22.3. ESI-MS [M]+: m/z 664.5. HPLC
purity = 100% (CH3CN 0.1% TFA/H2O 0.1% TFA 65/35 (v/v), flow = 1.0
mL/min, tR = 9.7 min), at 226, 254 and 400 nm.
(10-Carboxydecyl)triphenylphosphonium bromide (10). The reaction
was performed in CH3CN. After 24h, the solvent was removed under
reduced pressure to give an oily residue. Purification by flash
chromatography using DCM/MeOH (95/5 to 80/20, v/v), gave 10 as a
(11-((3-((4-Nitro-3-(trifluoromethyl)phenyl)amino)propyl)amino)-11-
oxoundecyl) triphenylphosphonium bromide (14). The carboxyl
function activation reaction time was 12 hours. Eluent: DCM/MeOH, 95/5
to 90/10, v/v. The target compound was as a foamy yellow solid (415 mg,
40%). 1H NMR (300 Mz, CDCl3), 7.90 (d, J=9.1 Hz, 1H), 7.85–7.64 (m,
15H), 7.01–6.95 (m, 1H), 6.78–6.68 (m, 1H), 3.39–3.28 (m, 6H), 2.27 (t,
J=7.5 Hz, 2H), 1.87–1.76 (m, 2H), 1.72–1.47 (m, 6H), 1.35–1.10 (m, 10H).
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whitish semi-solid. (2.200 g, 83%). H NMR (300 MHz, CD3OD), 7.90–
7.66 (m ,15H), 3.43–3.31 (m, 2H), 2.21 (t, J=7,4 Hz, 2H), 1.70–1.44 (m,
6H), 1.36–1.16 (m, 10H). 13C NMR (75 MHz, CD3OD), 176.8, 135.3 (d,
4JP=3.0 Hz), 133.8 (d, 3JP=10.0 Hz), 130.5 (d, 2JP=12.6 Hz), 119.0 (d,
1JP=86.3 Hz), 34.0, 30.5 (d, 2JP=16.2 Hz), 29.4, 29.3, 29.2, 28.8, 25.1, 22.5
(d, 3JP=4.4 Hz), 21.6 (d, 1JP=51.0 Hz). ESI-MS [M]+: m/z 447.4.
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13C NMR (75MHz, CDCl3), 174.6, 169.4, 153.0, 135.5, (d, JP=3.0 Hz),
134.3, 133.6 (d, 3JP=9.9 Hz), 130.7 (d, 2JP=12.5 Hz), 129.5, 126.6 (q,
2JF=32.9 Hz), 122.7 (q, 1JF=272.2 Hz), 118.1 (d, 1JP=86.1 Hz), 39.9, 36.5,
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36.3, 30.3 (d, JP=15.9 Hz), 28.9, 28.8, 28.6 (d, 3JP=3.2 Hz), 28.3, 27.1,
General synthetic procedure for the preparation of target compounds
25.7, 22.9 (d, 1JP=44.6 Hz), 22.5. ESI-MS [M]+: m/z 692.4. HPLC purity =
95% (CH3CN 0.1% TFA/H2O 0.1% TFA 65/35 (v/v), flow = 1.0 mL/min, tR
= 13.8 min), at 226, 254 and 400 nm.
(11-14).
N,N'-dicyclohexylcarbodiimide
(2.5
equiv),
and
N-
hydroxysuccinimide (1.5 equiv), were added to
a
solution of the
appropriate ω-triphenylphosphonium-substituted acid (7-10, 1 equiv), in
dry DMF (40 mL), and the reaction mixture was stirred at room temperature
for 4-12 hours. When the reaction was completed (TLC), the solvent was
removed under reduced pressure and the crude solid was triturated with
cold CH3CN and filtered under reduced pressure. The filtrate was
concentrated to dryness and dissolved in dry DCM/DMF (97:3, 31 mL). 1
(1 equiv), was added to this solution and the mixture was stirred for 72h at
room temperature. The reaction mixture was then washed with H2O (3 ×
20 mL), and brine (20 mL), dried over Na2SO4 and concentrated to dryness.
Purification by flash chromatography, eluted with a different mixture of
DCM/MeOH, gave target compounds as yellow foamy solids.
Determination of lipophilicity descriptor (log P).
The partition coefficients (log P), of the target compounds between n-
octanol and PBS (pH 7.4), were obtained using the shake-flask technique
at room temperature. In the shake-flask experiments, 50 mM phosphate
buffer saline (pH 7.4), was used as the aqueous phase and ionic strength
was adjusted to 0.15 M using KCl. The organic (n-octanol), and aqueous
phases were mutually saturated by shaking for 4 h. The compounds were
solubilised in the buffered aqueous phase at concentrations of either 0.1
mM or 0.05 mM, depending on their solubility, and appropriate amounts of
n-octanol were added. The two phases were shaken for about 20 min, by
which time the partitioning equilibrium of the solutes had been reached,
and then centrifuged (10000 rpm, 10 min). The concentration of the solutes
was measured in the aqueous phase using UV spectrophotometer (UV-
2501PC, Shimadzu). Each log D value is an average of at least six
measurements. All the experiments were performed while avoiding
exposure to light.
(3-((3-((4-Nitro-3-(trifluoromethyl)phenyl)amino)propyl)amino)-3-
oxopropyl)triphenylphosphonium bromide (11). The carboxyl function
activation reaction time was 4 hours. Eluent: DCM/MeOH, 98/2 to 95/5, v/v.
The target compound 11 was as a foamy yellow solid (yellow solid, lit.[13])
(923 mg, 58%). 1H NMR (300 MHz, DMSO-d6), 8.03 (d, J=9.1 Hz, 1H),
7.92–7.63 (m, 15H), 7.03–6.96 (m, 1H), 6.75 (dd, J=9.2, 2.2 Hz, 1H), 3.82–
3.65 (m, 2H), 3.15–2.97 (m, 4H), 2.06–2.00 (m, 2H), 1.65–1.51 (m, 2H).
13C NMR (75 MHz, DMSO-d6): 168.7 (d, 3JP=15.0 Hz), 153.2, 135.0,
133.7 (d, 3JP=10.2 Hz), 133.5, 130.3 (d, 2JP=12.5 Hz), 129.9, 126.4 (q,
1JF=248.9 Hz), 118.4 (d, 1JP=86.3 Hz), 36.6, 30.8, 27.9, 27.5, 16.9 (d,
1JP=53.4 Hz). ESI-MS [M]+: m/z 580.3. HPLC purity = 96% (CH3CN 0.1%
TFA/H2O 0.1% TFA 65/35 (v/v), flow = 1.0 mL/min, tR = 6.4 min), at 226,
254 and 400 nm.
Molecular Dynamics.
The ligands were parameterized using the ab initio RESP-charge-fitting
methodology, as implemented in the BiKi Life Science software suite
Gromacs 4.6.1 was used to run MD simulations.[34] The water model used
was TIP3P. The solvated system was preliminarily minimized by 5000
steps of steepest descent. As in the subsequent equilibration, the
integration step was equal to 1 fs. The Verlet cut-off scheme, the
Bussi−Parrinello thermostat[35] LINCS for the constraints (all bonds), and
the particle mesh Ewald for electrostatics, with a short-range cut-off of 11
Å, were used. The system was equilibrated in four subsequent steps: 100
ps in the NVT ensemble at 100 K, 100 ps in the NVT ensemble at 200 K,
100 ps in the NVT ensemble at 300 K and a 1 ns long NPT simulation in
order to reach the pressure equilibrium condition. No restraint was applied.
The production run was carried out in the NVT ensemble at 300 K without
any restraint for 20 ns. Two replicas were simulated for each ligand upon
velocity reassignment.
(6-((3-((4-Nitro-3-(trifluoromethyl)phenyl)amino)propyl)amino)-6-
oxohexyl) triphenylphosphonium bromide (12). The carboxyl function
activation reaction time was 4 hours. Eluent: DCM/MeOH, 98/2 to 95/5, v/v.
The target compound 12 was as a foamy yellow solid (489 mg, 70%). 1H
NMR (600 MHz, DMSO-d6), 8.01 (d, J=9.1 Hz, 1H), 7.78–7.67 (m, 15H),
7.02–6.96 (m, 1H), 6.77–6.74 (m, 1H), 3.55–3.47 (m, 2H), 3.12 (dd, J=12.7,
6.8 Hz, 2H), 3.05 (q, J=6.7, 2H), 1.98 (t, J=7.2 Hz, 2H), 1.61 (quin, J=6.9
Hz, 2H), 1.49–1.34 (m, 6H). 13C NMR (150 MHz, DMSO-d6): 172.0, 153.2,
135.0 (d, 4JP=3.0 Hz), 133.6 (d, 3JP=10.1 Hz), 133.5, 130.3 (d, 2JP=12.6
Hz), 122.6 (q, 1JF=272.7 Hz), 118.6 (d, 1JP=85.5), 36.2, 35.1, 30.8, 29.6 (d,
2JP=16.3 Hz), 28.2, 24.5, 21.7 (d, 3JP=3.2 Hz), 20.2 (d, 1JP=49.8 Hz). ESI-
MS [M]+: m/z 622.3. HPLC purity = 97% (CH3CN 0.1% TFA/H2O 0.1% TFA
65/35 (v/v), flow = 1.0 mL/min, tR = 7.4 min), at 226, 254 and 400 nm.
NO-photorelease.
(9-((3-((4-Nitro-3-(trifluoromethyl)phenyl)amino)propyl)amino)-9-
oxononyl) triphenylphosphonium bromide (13). The carboxyl function
activation reaction time was 6 hours. Eluent: DCM/MeOH, 98/2 to 85/15,
v/v. The target compound 13 was as a foamy yellow solid (340 mg, 79%).
1H NMR (300 MHz, CD3OD), 7.95 (d, J=9.2 Hz, 1H), 7.89–7.66 (m, 15H),
6.93 (d, J=2.2 Hz, 1H), 6.72 (dd, J=9.2, 2.5 Hz, 1H), 3.44–3.29 (m, 2H),
3.29–3.16 (m, 4H), 2.12 (t, J=7.4 Hz, 2H), 1.87–1.71 (m, 2H), 1.69–1.42
(m, 6H), 1.35–1.15 (m, 6H). 13C NMR (75 MHz, CD3OD), 174.9, 154.4,
136.8 (d, 4JP=3.0 Hz), 134.8 (d, 3JP=10.0 Hz), 131.5 (d, 2JP=12.6 Hz), 130.4,
127.3 (q, 2JF 32.8 Hz), 124.0 (q, 1JF=273.0 Hz), 119.9 (d, 1JP=86.3 Hz),
112.9, 112.1, 41.4, 37.4 (d, 1JP=57.6 Hz), 31.5 (d, 2JP=16.3 Hz), 30.1, 29.7,
NO release was evaluated, as nitrite formed, using the Griess reaction. 5
mL of 100 µM solutions of compounds 2, 11, 12, 13 and 14 in 50 mM
pH=7.4 phosphate buffer saline solution (PBS), and 1% DMSO were
irradiated using a violet led 10W lamp. An irradiance of 7 mW/cm2 was
measured with an HD2302.0 Delta Ohm light meter equipped with a Delta
Ohm LP471RAD light probe. The presence of nitrite was determined at
regular time intervals using the Griess assay; 1.0 mL of the reaction
mixture was treated with 250 µL of Griess reagent (4% w/v sulphanilamide,
0.2 % w/v N-naphthylethylenediamine dihydrochloride, 1.47 M phosphoric
acid). After 10 min at room temperature, the reaction mixture was analysed
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