ALAJMI ET AL.
Figure 3. A critical inspection of chromatographic parameters
and chromatograms established first-class chiral separation
of all four stereomers of DL-leucine-DL-tryptophan dipeptide.
The individual peak of the separated stereomers was identi-
fied by running pure stereomers under matching experimen-
tal conditions. The order of elution observed was LL > DD-
> DL- > LD-stereomers.
Chiral HPLC Method Optimization
HPLC experimental conditions were optimized using vari-
ous varieties of mobile phases. Ammonium acetate and aceto-
nitrile were used in the different ratios such as 10:90, 20:80,
30:70, 60:40, and 50:50. Likewise, ammonium acetate, metha-
nol, and acetonitrile were used in 50:10:40, 40:30:30, 50:10:40,
50:20:30, etc. ratios. The different concentrations of ammo-
nium acetate ranged from 5 to 50 mM. The alteration in mo-
bile phase flow rates were varied from 0.2 to 2.0 mL/min. It
was observed that the peaks were broad at 0.2 nd 0.5 mL/
min flow rates. On the other hand, the peaks were partially re-
solved at 1.0 and 1.5 mL/min flow rate. Moreover, there was
no separation at 2.0 mL/min flow rate. The detection wave-
lengths varied from 210 to 350 nm. The detection and quanti-
fication limits were poor at higher wavelengths than 20 nm.
The amounts of injection were 5 to 25 μL. The optimization
was ascertained by controlling the temperature from 10 to
50 °C. As a result of comprehensive HPLC experiments, the
best conditions were developed and are reported in this arti-
cle. The chromatographic method was validated using di-
verse variables, viz. linearity, limit of detection (LOD, S/N
1:5), and limit of quantification (LOQ, S /N 1:10), precision,
accuracy, selectivity, robustness, and ruggedness.
Fig. 1. The structures of four stereomers of DL-leucine-DL-tryptophan
dipeptide.
of 25 mm diameter and 0.45 μm pore size and degassed daily before use.
The capacity (k), separation (α), and resolution (Rs) factors were
calculated.
Simulation Studies
For determination of the chiral resolution mechanism, the interactions
of dipeptide stereomers with AmyCoat column [tris-(3,5-dimethylphenyl
carbamate) amylose] chiral selector (Fig. 2) were calculated by modeling
approach. The results of modeling were used to ascertain the chiral reso-
lution mechanism.
Procedure
The modeling studies were done on a computer with configurations of
Intel(R) Core i3 CPU (2.3 GHz) with XP-based operating system (Win-
dows 2003). The Marvin Sketch (5.8.2 version) was adopted to sketch
structures of the stereomers of DL-leucine-DL-tryptophan. The structures
were cleaned to 3D and saved in PDB format. The modeling was done
with AutoDock 4.2 Vina (Scripps Research Institute, La Jolla, CA) and
Pymol software; taking into account all the bonds of ligand as rotatable
and tris-(3,5-dimethylphenyl carbamate) amylose as rigid.15 The X, Y,
and Z axes with 80 × 80 × 60 Å with 0.375 Å spacing were adopted. The
modeling was done by an empirical free energy function and Lamarckian
Genetic Algorithm, with an initial population of 150 randomly placed indi-
viduals. In addition, a maximum number of 2,500,000 energy evaluations,
mutation rate of 0.02, and crossover rate of 0.80 were also used. In this ar-
ticle, a plugin for PyMOL is described, which allowed doing the molecu-
lar docking, virtual screening, and binding site analysis with PyMOL. The
plugin represented an interface between PyMOL and two popular
docking programs, i.e., AutoDock (4.2)16 and AutoDock Vina.17 The com-
bined effect of these two softwares furnished wide use of a Python script
compilation (AutoDock Tools) for the setup of docking runs. Additionally,
Ligplot software was applied for the assessment of hydrophobic interac-
tions. Fifty independent docking runs were applied for each ligand
(stereomer) and tris-(3,5-dimethylphenyl carbamate) amylose for lowest
free energy of binding conformation from the largest cluster, which was
written and saved in PDBQT format. These PDBQT files had been con-
verted to PDB file format.
Simulation Study of Dipeptides on AmyCoat Chiral Selector
The modeling study is one of the most important parapher-
nalia for ascertaining the bindings and mechanism of chiral
separation of the stereomers with the chiral selector. Hence,
efforts were made to ascertain the stereomeric interactions
on a chiral stationary phase. AmyCoat-RP column contains
the tris-(3,5-dimethylphenyl carbamate) amylose chiral selec-
tor. It has different types of functional groups for interacting
stereoselectively with four stereomers. The docking energies
of L-leucine-L-tryptophan, D-leucine-D-tryptophan, D-leucine-
L-tryptophan, and L-leucine-D-tryptophan stereomers were
À3.0, À3.3, À3.9, and À4.2 kcal/mol, respectively (Table 2).
It was due to different hydrogen bondings, hydrophobic inter-
actions, π–π interactions, and steric effects among stereomers
and chiral selectors. The number of hydrogen bonds was one
among each stereomer and chiral stationary phase. These hy-
drogen bonds were found among oxygen atoms of the car-
boxylic group of dipeptide, nitrogen atom of amine group of
dipeptide, and different hydrogen atoms of the chiral selec-
tors. The residues involved in hydrogen bonding of receptors
were UNK236, UNK255, and UNK186. Similarly, the residues
involved in hydrophobic interactions were UNK386 and
UNK403. The 3D docking pose of four stereomers of DL-leu-
cine-DL-tryptophan dipeptide with tris-(3,5-dimethylphenyl
carbamate) amylose chiral selector is shown in Figure 4. It
is clear from this figure that all four stereomers interacted
with tris-(3,5-dimethylphenyl carbamate) amylose chiral se-
lector in a different fashion. Therefore, the elution order of
these stereomers was explained by considering the above-
cited forces among stereomers and chiral stationary phase.
RESULTS AND DISCUSSION
Chromatography
Chiral HPLC parameters viz. retention (k), separation (α),
and resolution (Rs) factors were calculated for the resolved
stereomers of DL-leucine-DL-tryptophan dipeptide on an
AmyCoat-RP column. The values of retention factors for LL-,
DD-, DL-, and LD-stereomers were 2.25, 3.60, 5.00, and 6.50,
respectively. The values of separation and resolution factors
were 1.60, 1.39, and 1.30 and 7.76, 8.05, and 7.19, correspond-
ingly. These values are given in Table 1. A perusal of this ta-
ble indicates that the values of α and Rs were greater than
one, representing baseline separation of all four stereomers.
The chromatogram of the separated stereomers is shown in
Chirality DOI 10.1002/chir