Azam et al.
Article
crude product by collecting the acid chloride (colorless liquid) in
a liquid-nitrogen-cooled trap under reduced pressure (0.459 g,
2.86 mmol, 59%). H NMR (CDCl3): δ 2.54 (m, 2H, -CH2-
Self-Assembled Monolayer Formation on Silica Surfaces.
Cleaned samples wererinsedwith a stream of methanol(15 mL), a
mixture of methanol and toluene (1:1 v/v, 15 mL), and finally a
stream of toluene (15 mL) and then immersed in 3 mM solution of
the trimethoxysilane in dry toluene with 0.1% water (v/v) for 4 h.
The same protocol was used for SAM formation in hexane, with
hexane substituted for toluene in the above steps. To make the
orthogonally reactive SAMs, we combined different proportions
of amino and azido trimethoxysilanes to reach a total concentra-
tion of 3 mM trimethoxysilane. After the 4 h of reaction time, the
samples were rinsed thoroughly with toluene (15 mL), sonicated
for 1 min each in toluene (15 mL), toluene/methanol (15 mL), and
methanol (15 mL) and then blown dry with a stream of nitrogen
gas. The samples were either used immediately in a subsequent
reaction or stored under vacuum.
1
CF3). 3.19 (t, 2H, -CH2-COCl), 13C NMR (CDCL3): δ 29.37
(q, -CH2-CF3), 39.59 (q, -CH2-COCl), 125.78 (q, -CF3),
171.75 (s, -COCl). IR cm-1: 2917.4, 2849.1, 1829.7, 1446.3,
1424.3, 127.9, 1232.3, 1143.5, 1114.5, 1063.5, 1008.1, 985.1.
Synthesis of 2,2,2-Trifluoroethyl Hept-6-ynoate. Hept-6-
ynoic acid (0.996 g, 7.89 mmol) was weighed in a 25 mL round-
bottomed flask and dissolved in the minimum volume of DCM
(4.0 mL). An oxalyl chloride solution in DCM (2.0 M, 5.0 mL,
10.0 mmol) was added slowly via syringe; then, the reaction mix-
ture was placed in an ice bath. After the reaction mixture was
cooled to 0 °C, DMF (1 drop) was added, and immediate effer-
vescence of gas was observed. After the reaction mixture was
stirred in an ice bath for 15 min, it was allowed to come to room
temperature and stirred for 2 h. DCM and excess oxalyl chloride
were then rotovaped off, and the reddish brown crude product
was used in the next step. 1H NMR (CDCl3): δ 1.55-1.63 (m, 2H,
CHtC-CH2-CH2-), 1.81-1.88 (m, 2H, CHtC-CH2-CH2-
CH2-), 1.97 (t, 1H, HCtCH2C-), 2.21-2.25 (d of t, 2H,
HCtC-CH2-), 2.93 (t, 2H, CH2-CO).
Modification of Powdered Silica for the IR Absorbance
˚
Experiments. SiO2 powder (0.5 g, 70-230 mesh, 100 A) was
added to a 25 mL flask containing a solution of the respective
trimethoxysilaneintoluene(5 mL, 50mM). Thisslurrywasstirred
for 4 h at room temperature. The higher concentration of trime-
thoxysilane was used because of the high surface area of the silica gel
(surface area = 300 m2/g). After reaction, the functionalizedsilica
powder wasfilteredina Buchner funnelto remove the filtrate. The
powder was then washed with toluene (4 ꢀ 15 mL) and methanol
(4 ꢀ 15 mL). Finally, the powder was annealed for 30 min in an
oven at 90 ( 5 °C. The subsequent acylation or [3 þ 2] cycloaddi-
tion reaction was performed on the functionalized powder using
the same procedure as the silica surfaces with 0.1 g powdered silica
samples.
Hept-6-ynoyl chloride was taken in a 25 mL flask and dissolved
in DCM (4 mL). 2,2,2-Trifluoroethanol (0.7 mL, 9.1 mmol) and
triethylamine (TEA, 0.9 mL, 9.0 mmol) were dissolved in DCM
(3 mL) and added to the flask containing the acid chloride. The
resulting mixture was stirred for 4 h at room temperature. The
reaction mixture was then diluted with DCM (5 mL), washed with
water (5 ꢀ 3 mL), dried over Na2SO4, and filtered in a 25 mL
round-bottomed flask. The solvent and any remaining trifluoro-
ethanol starting material were removed from the filtrate by
rotary evaporation. The crude product was purified by vacuum
distillation (65-70 °C, 48 mTorr) to yield a clear oil (1.17 g, 5.55
mmol; overall yield in two steps 70.3%). 1H NMR (CDCl3):
δ 1.58 (m, 2H, CHtC-CH2-CH2-), 1.79 (m, 2H, CHtC-
CH2-CH2-CH2-), 1.95 (t, 1H, CHtCCH2-), 2.23 (d of
t, 2H, CHtC-CH2-), 2.44 (t, 2H, CH2-CO), 4.47 (q, 2H,
O-CH2CF3). 13C NMR (CDCl3): δ 18.06 (s, CHtC-CH2-),
23.69 (s, CHtC-CH2-CH2-), 27.62 (s, CHtC-CH2-
CH2-CH2-), 33.07 (s, CHtC-CH2-CH2-CH2-CH2-),
60.21 (q, CF3-CH2-), 68.78 (s, CHtC-), 83.65 (s, CHtC-),
123.01 (q, CF3-CH2-), 171.72 (s, CdO). IR cm-1: 3311.1,
2928.6, 2869.9, 2119.3, 1760.9, 1414.6, 1283.1, 1171.3, 1141.5,
1083.3, 978.4.
General Method for Acylation of Amino SAMs. The acid
chloride (0.5 mmol) was dissolved in a 20 mL vial in acetonitrile
(ACN) (5 mL), followed by the addition of triethylamine (0.05 mL,
0.36 mmol). Freshly prepared amino SAMs were immersed in
the vial containing the reaction mixture, which was then capped
and allowed to react overnight. The acylated amino SAMs were
then taken out of the vial and rinsed with ACN (10 mL) and
toluene (10 mL), followed by 1 min sonication in toluene (10 mL)
and methanol (10 mL) each and then blown dry with a stream of
nitrogen gas.
General Method for [3 þ 2] Cycloaddition Reaction of
Alkynes with Azido SAMs. The following procedure was used
for all of the alkynes except for the reaction of benzyl azido SAM
with propargyl-substituted triethyleneglycol monomethyl ether
(TEG-alkyne). Copper sulfate (6.2 mg, 0.025 mmol) and ascorbic
acid (8.8 mg, 0.050 mmol) were transferred to a 20 mL vial and
dissolved in DMF (5 mL) by sonication. The alkyne (0.25 mmol)
was dissolved in that solution at which point freshly prepared
azido SAMs were immediately immersed in the vial, which was
then capped, wrapped in foil, and allowed to react overnight. The
reacted azido SAMs were then taken out of the vial and rinsed
with DMF (10 mL) and toluene (10 mL), followed by sonication
for 1 min each in toluene (10 mL) and methanol (10 mL). Finally,
the samples were blown dry with a stream of nitrogen and stored
under vacuum.
Substrate Cleaning Procedure. Silicon wafers containing a
native oxide layer were used as the substrates for the XPS and
AFM measurements. Glass slides (Fisher, Microscope Slides)
were used for the contact angle measurements. Prior to surface
functionalization, both types of samples were cleaned with
methanol (∼15 mL), followed by drying in an oven for 10 min
at 90 ( 5 °C. The cleaned wafers were reacted with “piranha
solution” (3:1 mixture of sulfuric acid and 30% hydrogen
peroxide) in a glass beaker to make the surface rich with hydroxyl
groups.25 (Caution: Piranha solution reacts explosively with or-
ganic materials, so it should not be combined with any organic
compounds or solvents. Use caution.) The beaker containing the
samples was rinsed copiously with deionized water (5 ꢀ 100 mL);
the individual samples were then each rinsed with a stream of
Millipore water (100 mL), sonicated in Millipore water (100 mL)
for 10 min, and blown dry with a stream of nitrogen gas.
The substrates thus obtained were placed in an oven for 30 min
(90 ( 5 °C). In some cases, the silicon wafers were next cleaned
using a reactive ion etcher (μEtch RIE, Plasma Lab) with oxygen
as reactive gas in a radio frequency (RF)-induced plasma to
remove residual fluorine from the packing material. Process
pressure was 500 mTorr, and process time was 1 min for plasma
cleaning.
[3 þ 2] Cycloaddition of the Benzyl Azido SAM with
TEG-Alkyne. AFM analysis suggested that different cycloaddi-
tion conditions were required for the benzyl azido SAM with
TEG-alkyne. Therefore, copper(I) iodide (9.5 mg, 0.050 mmol)
and triethylamine (0.1 mL, 0.7 mmol) were transferred to a 20 mL
vial containing water (2.5 mL) and methanol (2.5 mL). TEG-
alkyne (0.05 g, 0.25 mmol) was dissolved in that solution, and
freshly prepared benzyl azido SAMs were immersed in the vial,
which was then capped. The SAM sample was taken out of the
vial after overnight reaction and rinsed with water (10 mL),
methanol (10 mL), toluene (10 mL), and methanol (10 mL), fol-
lowed by sonication in methanol (10 mL) for 1 min. The samples
were blown dry with nitrogen and stored under vacuum.
Bifunctional Modification of Orthogonally Reactive SAM.
The orthogonally reactive SAMs were reacted via acylation and
(25) Zhang, F.; Srinivasan, M. P. Langmuir 2004, 20, 2309–2314.
Langmuir 2011, 27(2), 741–750
DOI: 10.1021/la1041647 743