120016-98-0Relevant academic research and scientific papers
Accurate distance determination of nucleic acids via foerster resonance energy transfer: Implications of dye Linker length and rigidity
Sindbert, Simon,Kalinin, Stanislav,Nguyen, Hien,Kienzler, Andrea,Clima, Lilia,Bannwarth, Willi,Appel, Bettina,Mueller, Sabine,Seidel, Claus A. M.
experimental part, p. 2463 - 2480 (2011/05/02)
In Foerster resonance energy transfer (FRET) experiments, the donor (D) and acceptor (A) fluorophores are usually attached to the macromolecule of interest via long flexible linkers of up to 15 A in length. This causes significant uncertainties in quantit
Functionalization of mono- and oligonucleotides with phosphane ligands by amide bond formation
Nuzzolo, Marzia,Grabulosa, Arnald,Slawin, Alexandra M. Z.,Meeuwenoord, Nico J.,Van Der Marel, Gijsbert A.,Kamer, Paul C. J.
scheme or table, p. 3229 - 3236 (2010/08/20)
Seven phosphane-functionalized deoxyuridines have been prepared by amide bond formation between aminodeoxyuridines and phosphanylcarboxylic acids. X-ray crystal structures for two of these new modified nucleosides have been obtained. The same coupling method has been extended to oligonucleotides. The phosphane containing strands have been purified and characterized by MALDI-TOF and, for the first time, 31P NMR spectrometry. Coordination of a phosphane-modified 15-mer to a [PdCl(η3-allyl)] moiety has been confirmed by 31P NMR spectroscopy.
Application of a highly robust and efficient fluorescence-resonance-energy- transfer (FRET) system in DNA
Clima, Lilia,Hirtz-Haag, Caroline,Kienzler, Andrea,Bannwarth, Willi
, p. 1082 - 1098 (2008/03/12)
We report a feasibility study for the application of our newly developed highly efficient and robust fluorescence-resonance-energy-transfer (FRET) system to DNA. A 2′-oligodeoxynucleotide, 12, equipped with a quinolinone derivative as donor and a (bathoph
OLIGONUCLEOTIDE LABELLING: A CONCISE SYNTHESIS OF A MODIFIED THYMIDINE PHOSPHORAMIDITE
Cruickshank, Kenneth A.,Stockwell, Daniel L.
, p. 5221 - 5224 (2007/10/02)
The condensation of 5'-dimethoxytrityl-5-iodo-2'-deoxyuridine (1) with N-trifluoroacetylpropargylamine (2) in the presence bis(triphenylphosphine) Pd(II) chloride and copper(I) iodide and subsequent conversion to the 3'-phosphoramidite (4) is an efficient
