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5'-O-(DIMETHOXYTRITYL)-5-IODO-2'-DEOXYURIDINE, also known as 2'-Deoxy-5'-O-DMT-5-iodouridine, is a chemical compound that is a modified form of the nucleoside deoxyuridine. It is characterized by the presence of a dimethoxytrityl (DMT) group at the 5' position and an iodine atom at the 5-position of the uracil base. This modification enhances its properties for specific applications in the field of molecular biology and genetics.

104375-88-4

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104375-88-4 Usage

Uses

Used in Genetic Analysis:
5'-O-(DIMETHOXYTRITYL)-5-IODO-2'-DEOXYURIDINE is used as a component in the synthesis of modified oligonucleotides for genetic analysis. The expression is: 5'-O-(DIMETHOXYTRITYL)-5-IODO-2'-DEOXYURIDINE is used as a building block for [modified oligonucleotides] for [enhancing their properties in genetic analysis].
Used in RNA Detection:
In the field of molecular biology, 5'-O-(DIMETHOXYTRITYL)-5-IODO-2'-DEOXYURIDINE is used as a key component in the development of probes for RNA detection. The expression is: 5'-O-(DIMETHOXYTRITYL)-5-IODO-2'-DEOXYURIDINE is used as a probe component for [RNA detection] for [improving the specificity and sensitivity of the detection process].
Used in the Synthesis of Modified Oligonucleotides:
5'-O-(DIMETHOXYTRITYL)-5-IODO-2'-DEOXYURIDINE is also utilized in the synthesis of modified oligonucleotides with enhanced properties, such as increased stability and improved binding affinity. The expression is: 5'-O-(DIMETHOXYTRITYL)-5-IODO-2'-DEOXYURIDINE is used as a synthetic intermediate for [modified oligonucleotides] for [enhancing their stability and binding affinity].
Used in the Pharmaceutical Industry:
In the pharmaceutical industry, 5'-O-(DIMETHOXYTRITYL)-5-IODO-2'-DEOXYURIDINE may be used in the development of new drugs targeting genetic disorders or diseases related to RNA regulation. The expression is: Used in Pharmaceutical Industry, 5'-O-(DIMETHOXYTRITYL)-5-IODO-2'-DEOXYURIDINE is used as a drug development tool for [targeting genetic disorders and RNA-related diseases] for [facilitating the design and synthesis of novel therapeutic agents].
Used in Research and Development:
5'-O-(DIMETHOXYTRITYL)-5-IODO-2'-DEOXYURIDINE is also valuable in research and development settings, where it can be employed to study the interactions between oligonucleotides and their target molecules, as well as to develop new methodologies for genetic analysis and RNA detection. The expression is: Used in Research and Development, 5'-O-(DIMETHOXYTRITYL)-5-IODO-2'-DEOXYURIDINE is used as a research tool for [studying molecular interactions and developing new methodologies] for [advancing the understanding of genetic and RNA-related processes].

Check Digit Verification of cas no

The CAS Registry Mumber 104375-88-4 includes 9 digits separated into 3 groups by hyphens. The first part of the number,starting from the left, has 6 digits, 1,0,4,3,7 and 5 respectively; the second part has 2 digits, 8 and 8 respectively.
Calculate Digit Verification of CAS Registry Number 104375-88:
(8*1)+(7*0)+(6*4)+(5*3)+(4*7)+(3*5)+(2*8)+(1*8)=114
114 % 10 = 4
So 104375-88-4 is a valid CAS Registry Number.

104375-88-4SDS

SAFETY DATA SHEETS

According to Globally Harmonized System of Classification and Labelling of Chemicals (GHS) - Sixth revised edition

Version: 1.0

Creation Date: Aug 15, 2017

Revision Date: Aug 15, 2017

1.Identification

1.1 GHS Product identifier

Product name 1-[(2R,4S,5R)-5-[[bis(4-methoxyphenyl)-phenylmethoxy]methyl]-4-hydroxyoxolan-2-yl]-5-iodopyrimidine-2,4-dione

1.2 Other means of identification

Product number -
Other names 5'-O-DMTr-IUdR

1.3 Recommended use of the chemical and restrictions on use

Identified uses For industry use only.
Uses advised against no data available

1.4 Supplier's details

1.5 Emergency phone number

Emergency phone number -
Service hours Monday to Friday, 9am-5pm (Standard time zone: UTC/GMT +8 hours).

More Details:104375-88-4 SDS

104375-88-4Downstream Products

104375-88-4Relevant academic research and scientific papers

Radiolabeled 5-iodo-3′-O-(17β-succinyl-5α-androstan-3-one) -2′-deoxyuridine and its 5′-monophosphate for imaging and therapy of androgen receptor-positive cancers: Synthesis and biological evaluation

Kortylewicz, Zbigniew P.,Nearman, Jessica,Baranowska-Kortylewicz, Janina

, p. 5124 - 5143 (2009)

High levels of androgen receptor (AR) are often indicative of recurrent, advanced, or metastatic cancers. These conditions are also characterized by a high proliferative fraction. 5-Radioiodo-3′-O-(17β-succinyl-5α- androstan-3-one)-2′-deoxyuridine 8 and 5

Nucleic Acid Conformation Influences Postsynthetic Suzuki-Miyaura Labeling of Oligonucleotides

Walunj, Manisha B.,Srivatsan, Seergazhi G.

, p. 2513 - 2521 (2020)

Chemoselective transformations that work under physiological conditions have emerged as powerful tools to label nucleic acids in cell-free and cellular environments. However, detailed studies investigating the influence of nucleic acid conformation on the

Primer extension reaction assays for incorporation of deoxynucleotide analogue into DNA

Wang, Xilong,Chen, Xun,Liu, Yonghui,Zhu, Jin

, p. 192 - 198 (2015)

Incorporation of deoxynucleotide analogues into DNA is important for the expansion of DNA functions. Primer extension reactions are commonly used for the assay of such reaction events. However, current assay protocols generally rely on radiolabeling, fluo

Synthesis of Phosphoramidite Monomers Equipped with Complementary Bases for Solid-Phase DNA Oligomerization

Romero-Pérez, Sonia,López-Martín, Isabel,Martos-Maldonado, Manuel C.,Somoza, álvaro,González-Rodríguez, David

, p. 41 - 45 (2020)

We describe the preparation of two monomers that bear complementary nucleobases at the edges (guanine-2′-deoxycytidine and 2-aminoadenine-2′-deoxyuridine) and that are conveniently protected and activated for solid-phase automated DNA synthesis. We report the optimized synthetic routes leading to the four nucleobase derivatives involved, their cross-coupling reactions into dinucleobase-containing monomers, and their oligomerization in the DNA synthesizer.

Tuning the Stereoselectivity of a DNA-Catalyzed Michael Addition through Covalent Modification

Dey, Surjendu,J?schke, Andres

, p. 11279 - 11282 (2015)

Complexes of G-quadruplex DNA and CuIIions have previously been applied as catalysts in asymmetric reactions, but the largely unspecific and noncovalent nature of the interaction has impeded understanding of the structural basis of catalysis. T

Design and Development of a Two-Color Emissive FRET Pair Based on a Photostable Fluorescent Deoxyuridine Donor Presenting a Mega-Stokes Shift

Barthes, Nicolas P. F.,Gavvala, Krishna,Bonhomme, Dominique,Dabert-Gay, Anne Sophie,Debayle, Delphine,Mély, Yves,Michel, Beno?t Y.,Burger, Alain

, p. 10733 - 10741 (2016)

We report the synthesis and site-specific incorporation in oligodeoxynucleotides (ODNs) of an emissive deoxyuridine analog electronically conjugated on its C5-position with a 3-methoxychromone moiety acting as a fluorophore. When incorporated in ODNs, thi

Introducing structural flexibility into porphyrin-DNA zipper arrays

Brewer, Ashley,Siligardi, Guiliano,Neylon, Cameron,Stulz, Eugen

, p. 777 - 782 (2011)

A more flexible nucleotide building block for the synthesis of new DNA based porphyrin-zipper arrays is described. Changing the rigid acetylene linker between the porphyrin substituent and the 2′-deoxyuridine to a more flexible propargyl amide containing

Metallocene - DNA: Synthesis, molecular and electronic structure and DNA incorporation of C5-ferrocenylthymidine derivatives

Pike, Andrew R.,Ryder, Lyndsey C.,Horrocks, Benjamin R.,Clegg, William,Elsegood, Mark R. J.,Connolly, Bernard A.,Houlton, Andrew

, p. 2891 - 2899 (2002)

Ferrocenylthymidine derivatives have been prepared by Pd-catalysed cross-coupling between ethynylferrocene or vinylferrocene and 5-iodo-2′-deoxyuridine. In the latter case a mixture of trans (2a) and gem (2b) isomers was obtained. The cis-vinylferrocenyl

Intelligent fluorescent nucleoside in sensing cytosine base: Importance of hydrophobic nature of perylene fluorophore

Bag, Subhendu Sekhar,Saito, Yoshio,Hanawa, Kazuo,Kodate, Satoshi,Suzuka, Isamu,Saito, Isao

, p. 6338 - 6341 (2006)

Fluorescence response upon hybridization of perylene labeled oligonucleotide probes depends on the microenvironment experienced by the perylene fluorophore. In mismatched duplex (PerU-C), enhanced fluorescence was observed while in matched dupl

Norepinephrine-Transporter-Targeted and DNA-Co-Targeted Theranostic Guanidines

Kortylewicz, Zbigniew P.,Coulter, Donald W.,Han, Guang,Baranowska-Kortylewicz, Janina

, p. 2051 - 2073 (2020)

High risk neuroblastoma often recurs, even with aggressive treatments. Clinical evidence suggests that proliferative activities are predictive of poor outcomes. This report describes syntheses, characterization, and biological properties of theranostic guanidines that target norepinephrine transporter and undergo intracellular processing, and subsequently their catabolites are efficiently incorporated into DNA of proliferating neuroblastoma cells. Radioactive guanidines are synthesized from 5-radioiodo-2′-deoxyuridine, a molecular radiotherapy platform with clinically proven minimal toxicities and DNA-targeting properties. The transport of radioactive guanidines into neuroblastoma cells is active as indicated by the competitive suppression of cellular uptake by meta-iodobenzylguanidine. The rate of intracellular processing and DNA uptake is influenced by the agent's catabolic stability and cell population doubling times. The radiotoxicity is directly proportional to DNA uptake and duration of exposure. Biodistribution of 5-[125I]iodo-3′-O-(?-guanidinohexanoyl)-2′-deoxyuridine in a mouse neuroblastoma model shows significant tumor retention of radioactivity. Neuroblastoma xenografts regress in response to the clinically achievable doses of this agent.

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