643-13-0Relevant articles and documents
A novel, cupin-type phosphoglucose isomerase in Escherichia coli
Baykov, Alexander A.,Kolomijtseva, Galina Ya.,Kurilova, Svetlana A.,Nazarova, Tatiana I.,Petukhova, Anastasia F.,Rodina, Elena V.,Vorobjeva, Natalia N.
, (2020/04/01)
Background: Escherichia coli cells contain a homolog of presumed 5-keto-4-deoxyuronate isomerase (KduI) from pectin-degrading soil bacteria, but the catalytic activity of the E. coli protein (o-KduI) was never demonstrated. Methods: The known three-dimensional structure of E. coli o-KduI was compared with the available structures of sugar-converting enzymes. Based on the results of this analysis, sugar isomerization activity of recombinant o-KduI was tested against a panel of D-sugars and their derivatives. Results: The three-dimensional structure of o-KduI exhibits a close similarity with Pyrococcus furiosus cupin-type phosphoglucose isomerase. In accordance with this similarity, o-KduI was found to catalyze interconversion of glucose-6-phosphate and fructose-6-phosphate and, less efficiently, conversion of glucuronate to fructuronate. o-KduI was hexameric in crystals but represented a mixture of inactive hexamers and active dimers in solution and contained a tightly bound Zn2+ ion. Dilution, substrate binding and Zn2+ removal shifted the hexamer ? dimer equilibrium to the dimers. Conclusions: Our findings identify o-KduI as a novel phosphosugar isomerase in E. coli, whose activity may be regulated by changes in oligomeric structure. General Significance: More than 5700 protein sequences are annotated as KduI, but their enzymatic activity has not been directly demonstrated. E. coli o-KduI is the first characterized member of this group, and its enzymatic activity was found to be different from the predicted activity.
Recyclable cellulose-containing magnetic nanoparticles: Immobilization of cellulose-binding module-tagged proteins and a synthetic metabolon featuring substrate channeling
Myung, Suwan,You, Chun,Zhang, Y.-H. Percival
, p. 4419 - 4427 (2013/09/12)
Easily recyclable cellulose-containing magnetic nanoparticles were developed for immobilizing family 3 cellulose-binding module (CBM)-tagged enzymes/proteins and a self-assembled three-enzyme complex called the synthetic metabolon. Avicel (microcrystalline cellulose)-containing magnetic nanoparticles (A-MNPs) and two controls of dextran-containing magnetic nanoparticles (D-MNPs) and magnetic nanoparticles (MNPs) were prepared by a solvothermal method. Their adsorption ability was investigated by using CBM-tagged green fluorescence protein and phosphoglucose isomerase. A-MNPs had higher adsorption capacity and tighter binding on CBM-tagged proteins than the two control MNPs because of the high-affinity adsorption of CBM on cellulose. In addition, A-MNPs were used to purify and co-immobilize a three-enzyme metabolon through a CBM-tagged scaffoldin containing three different cohesins. The three-enzyme metabolon comprised of dockerin-containing triosephosphate isomerase, aldolase, and fructose 1,6-bisphosphatase was self-assembled because of the high-affinity interaction between cohesins and dockerins. Thanks to spatial organization of the three-enzyme metabolon on the surface of A-MNPs, the metabolon exhibited a 4.6 times higher initial reaction rate than the non-complexed three-enzyme mixture at the same enzyme loading. These results suggested that the cellulose-containing MNPs were new supports for immobilizing enzymes, which could be selectively recycled or removed from other biocatalysts by a magnetic force, and the use of enzymes immobilized on A-MNPs could be very useful to control the On/Off process in enzymatic cascade reactions. The Royal Society of Chemistry 2013.
Broadening deoxysugar glycodiversity: Natural and engineered transaldolases unlock a complementary substrate space
Rale, Madhura,Schneider, Sarah,Sprenger, Georg A.,Samland, Anne K.,Fessner, Wolf-Dieter
supporting information; experimental part, p. 2623 - 2632 (2011/04/16)
The majority of prokaryotic drugs are produced in glycosylated form, with the deoxygenation level in the sugar moiety having a profound influence on the drug's bioprofile. Chemical deoxygenation is challenging due to the need for tedious protective group manipulations. For a direct biocatalytic de novo generation of deoxysugars by carboligation, with regiocontrol over deoxygenation sites determined by the choice of enzyme and aldol components, we have investigated the substrate scope of the F178Y mutant of transaldolase B, TalBF178Y, and fructose 6-phosphate aldolase, FSA, from E. coli against a panel of variously deoxygenated aldehydes and ketones as aldol acceptors and donors, respectively. Independent of substrate structure, both enzymes catalyze a stereospecific carboligation resulting in the D-threo configuration. In combination, these enzymes have allowed the preparation of a total of 22 out of 24 deoxygenated ketose-type products, many of which are inaccessible by available enzymes, from a [3 -8] substrate matrix. Although aliphatic and hydroxylated aliphatic aldehydes were good substrates, D-lactaldehyde was found to be an inhibitor possibly as a consequence of inactive substrate binding to the catalytic Lys residue. A 1-hydroxy-2-alkanone moiety was identified as a common requirement for the donor substrate, whereas propanone and butanone were inactive. For reactions involving dihydroxypropanone, TalBF178Y proved to be the superior catalyst, whereas for reactions involving 1-hydroxybutanone, FSA is the only choice; for conversions using hydroxypropanone, both TalBF178Y and FSA are suitable. Structure-guided mutagenesis of Ser176 to Ala in the distant binding pocket of TalBF178Y, in analogy with the FSA active site, further improved the acceptance of hydroxypropanone. Together, these catalysts are valuable new entries to an expanding toolbox of biocatalytic carboligation and complement each other well in their addressable constitutional space for the stereospecific preparation of deoxysugars.
