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Clofarabine

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Name

Clofarabine

EINECS 631-422-9
CAS No. 123318-82-1 Density 2.12 g/cm3
PSA 119.31000 LogP 0.23180
Solubility N/A Melting Point 228-231 °C
Formula C10H11ClFN5O3 Boiling Point 550 °C at 760 mmHg
Molecular Weight 303.68 Flash Point 286.4 °C
Transport Information N/A Appearance white solid
Safety 45 Risk Codes 25
Molecular Structure Molecular Structure of 123318-82-1 (Clofarabine) Hazard Symbols T
Synonyms

C1-F-Ara-A;9H-Purin-6-amine, 2-chloro-9-(2-deoxy-2-fluoro-beta-D-arabinofuranosyl)-;2-Chloro-9-(2-deoxy-2-fluoro-beta-D-arabinofuranosyl)adenine;Clofarabine, 5-(6-Amino-2-chloro-purin-9-yl)-4-fluoro-2-(hydroxymethyl)oxolan-3-ol;5-(6-Amino-2-chloro-purin-9-yl)-4-fluoro-2-(hydroxymethyl)oxolan-3-ol;Clofarex;Clolar;2-Chloro-9-(2-deoxy-2-fluoro-b-D-arabinofuranosyl)-9H-purin-6-amine;(2R,3R,4S,5R)-5-(6-amino-2-chloro-purin-9-yl)-4-fluoro-2-(hydroxymethyl)oxolan-3-ol;CAFDA;9H-Purin-6-amine, 2-chloro-9-(2-deoxy-2-fluoro-β-D-arabinofuranosyl)-;Clofarabine(Clofarabine or called Keluola foreshore);2-Chloro-6-amino-purine-2'-fluoro-2'- deoxy arabineoside;

Article Data 20

Clofarabine Synthetic route

355138-50-0

6-amino-2-chloro-9-(2'-deoxy-2'-fluoro-3',5'-di-O-benzoyl-β-D-arabinofuranosyl)-9H-purine

123318-82-1

clofarabine

Conditions
ConditionsYield
With methanol; sodium methylate at 15 - 20℃; for 2h;95.41%
With methanol; sodium methylate at 20℃; for 2h; pH=9 - 10; Reagent/catalyst; Green chemistry;95.5%
With methanol; sodium methylate at 0℃; for 2h;95.5%
1234346-14-5

6-amino-2-chloro-9-(2-deoxy-2-fluoro-3,5-di-O-(triisopropylsilyl)-β-D-arabinofuranosyl)-9H-purine

123318-82-1

clofarabine

Conditions
ConditionsYield
With tetramethylammonium fluoride; acetic acid In N,N-dimethyl-formamide at 20℃;90%
With tetramethylammonium fluoride; acetic acid In N,N-dimethyl-formamide at 20℃;90%

C25H19ClF3N5O8S

123318-82-1

clofarabine

Conditions
ConditionsYield
With ammonia In methanol at 60℃; for 5h;90%

2-chloro-6-heptanoylamido-9-(2-deoxy-2-fluoro-3,5-di-O-benzoyl-β-D-arabinofuranosyl)-9H-purine

123318-82-1

clofarabine

Conditions
ConditionsYield
60%

2-deoxy-2-fluoro-α,β-D-arabinofuranose 1-phosphate

1839-18-5

2-chloroadenine

123318-82-1

clofarabine

Conditions
ConditionsYield
With recombinant E.coli purine nucleoside phosphorylase In water at 52℃; for 168h; Enzymatic reaction;42%
103884-99-7

2,6-dichloro-9-(3-O-acetyl-5-O-benzoyl-2-deoxy-2-fluoro-β-D-arabinofuranosyl)-9H-purine

123318-82-1

clofarabine

Conditions
ConditionsYield
With lithium hydroxide; ammonia 1.) ethanol, RT, 3 d, 2.) acetonitrile, RT, 3 h; Yield given. Multistep reaction;
1353040-42-2

2-chloro-9-(3',5'-di-O-benzoyl-β-D-ribofuranosyl)adenine

123318-82-1

clofarabine

Conditions
ConditionsYield
Multi-step reaction with 3 steps
1.1: pyridine / dichloromethane / 0 - 20 °C / Inert atmosphere
2.1: guanidine carbonate / dichloromethane; ethyl acetate / 60 °C
2.2: 80 °C
3.1: sodium methylate; methanol / 30 - 40 °C
View Scheme
Multi-step reaction with 3 steps
1: pyridine; dichloromethane / 0 - 20 °C / Inert atmosphere
2: guanidine hydrogen carbonate; triethylamine hydrofluoride / ethyl acetate / 20 - 80 °C
3: sodium methylate / methanol / 30 - 40 °C
View Scheme
Multi-step reaction with 3 steps
1: pyridine / dichloromethane / 0.5 h / -10 - 0 °C / Inert atmosphere
2: N-ethyl-N,N-diisopropylamine; triethylamine tris(hydrogen fluoride) / toluene / 48 h / 35 - 40 °C
3: sodium methylate / methanol / 0.5 h / 30 °C
View Scheme
1055168-98-3

6-amino-2-chloro-9-(2',3',5'-tri-O-benzoyl-β-D-ribofuranosyl)-9H-purine

123318-82-1

clofarabine

Conditions
ConditionsYield
Multi-step reaction with 4 steps
1.1: pyridine; hydrazine hydrate; acetic acid / 75 - 80 °C / Inert atmosphere
2.1: pyridine / dichloromethane / 0 - 20 °C / Inert atmosphere
3.1: guanidine carbonate / dichloromethane; ethyl acetate / 60 °C
3.2: 80 °C
4.1: sodium methylate; methanol / 30 - 40 °C
View Scheme
Multi-step reaction with 4 steps
1.1: pyridine; hydrazine hydrate; acetic acid / 75 - 80 °C / Inert atmosphere
1.2: 65 °C
2.1: pyridine / dichloromethane / 0 - 20 °C / Inert atmosphere
3.1: guanidine carbonate / dichloromethane; ethyl acetate / 60 °C
3.2: 80 °C
4.1: sodium methylate; methanol / 30 - 40 °C
View Scheme
Multi-step reaction with 4 steps
1: hydrazine / pyridine; acetic acid / 20 - 80 °C / Inert atmosphere
2: pyridine; dichloromethane / 0 - 20 °C / Inert atmosphere
3: guanidine hydrogen carbonate; triethylamine hydrofluoride / ethyl acetate / 20 - 80 °C
4: sodium methylate / methanol / 30 - 40 °C
View Scheme
1353040-43-3

2-chloro-9-(3',5'-di-O-benzoyl-2'-O-trifluoromethylsulfonyl-β-D-ribofuranosyl)adenine

123318-82-1

clofarabine

Conditions
ConditionsYield
Multi-step reaction with 2 steps
1: N-ethyl-N,N-diisopropylamine; triethylamine tris(hydrogen fluoride) / toluene / 48 h / 35 - 40 °C
2: sodium methylate / methanol / 0.5 h / 30 °C
View Scheme
97614-44-3

2-deoxy-2-fluoro-3,5-di-O-benzoyl-α-D-arabinofuranosyl bromide

123318-82-1

clofarabine

Conditions
ConditionsYield
Multi-step reaction with 2 steps
1: sodium iodide / acetonitrile; tert-Amyl alcohol / 24 h / 20 °C / Inert atmosphere
2: sodium methylate / methanol / 7 h / 33 °C / Inert atmosphere
View Scheme
Multi-step reaction with 2 steps
1.1: potassium tert-butylate / acetonitrile; 1,2-dichloro-ethane; tert-Amyl alcohol / 19 h / 50 °C / Inert atmosphere
2.1: sodium methylate / methanol / 5 h / 20 °C / Inert atmosphere
2.2: 20 - 64 °C
View Scheme
Multi-step reaction with 3 steps
1: calcium hydride; sodium hydride / dichloromethane; acetonitrile / 20 °C / Inert atmosphere
2: ammonia / acetonitrile / 20 °C
3: sodium methylate / methanol / 0.67 h / 30 - 35 °C
View Scheme

Clofarabine Specification

The Clofarabine, with the CAS registry number 123318-82-1,is also known as 5-(6-Amino-2-chloro-purin-9-yl)-4-fluoro-2-(hydroxymethyl)oxolan-3-ol . It belongs to the product categories of Nucleotides;Pharmaceutical intermediate. This chemical's molecular formula is C10H11ClFN5O3 and molecular weight is 303.68. What's more,Its systematic name is 2-Chloro-9-(2-deoxy-2-fluoro-β-D-arabinofuranosyl)-9H-purin-6-amine .It is a White Solid which is approved in the United States for treatment of acute lymphoblastic leukaemia in paediatric patients who have relapsed.

Physical properties about Clofarabine are:
(1)ACD/LogP:  0.446; (2)# of Rule of 5 Violations:  0; (3)ACD/LogD (pH 5.5):  0.45; (4)ACD/LogD (pH 7.4):  0.45; (5)ACD/BCF (pH 5.5):  1.29; (6)ACD/BCF (pH 7.4):  1.29; (7)ACD/KOC (pH 5.5):  41.66; (8)ACD/KOC (pH 7.4):  41.67; (9)#H bond acceptors:  8; (10)#H bond donors:  4; (11)#Freely Rotating Bonds:  4; (12)Index of Refraction:  1.844; (13)Molar Refractivity:  63.578 cm3; (14)Molar Volume:  143.096 cm3; (15)Polarizability:  25.204 10-24cm3 ; (16)Surface Tension:  86.3119964599609 dyne/cm; (17)Density:  2.122 g/cm3; (18)Flash Point:  316.379 °C; (19)Enthalpy of Vaporization:  93.858 kJ/mol; (20)Boiling Point:  599.522 °C at 760 mmHg; (21)Vapour Pressure:  0 mmHg at 25°C.

Structure Descriptors of Clofarabine:
(1)Clc1nc(c2ncn(c2n1)[C@@H]3O[C@@H]([C@@H](O)[C@@H]3F)CO)N;
(2)Std. InChI:InChI=1S/C10H11ClFN5O3/c11-10-15-7(13)5-8(16-10)17(2-14-5)9-4(12)6(19)3(1-18)20-9/h2-4,6,9,18-19H,1H2,(H2,13,15,16)/t3-,4+,6-,9-/m1/s1;
(3)Std. InChIKey:WDDPHFBMKLOVOX-AYQXTPAHSA-N.

Uses of Clofarabine:
Clofarabine is second generation purine nucleoside analog; antimetabolite that inhibits DNA synthesis and resists deamination by adenosine deaminase, and is also antineoplastic. It is FDA-approved for treating relapsed or refractory acute lymphoblastic leukaemia (ALL) in children after at least two other types of treatment have failed. Furthermore, Clofarabine displays greater affinity towards dCK (deoxycytidine kinase, dCyd), an enzyme essential in nucleoside phosphorylation. As a intermediate, it can be used to manufacture antineoplastic Clofarabine.

Side effects of Clofarabine
(1)Side effects on tumor lysis syndrome (TLS): TLS is very serious and can lead to death if it is not treated right away. 
Clofarabine can quickly kills leukaemia cells in the blood. Then the body may react to this. Symptoms include fast breathing, fast heartbeat, low blood pressure, and fluid in the lungs.
(2)Side effects on Bone marrow problems (suppression). Clofarabine can stop the bone marrow from making enough red blood cells, white blood cells, and platelets. Serious side effects that can happen because of bone marrow suppression include severe infection (sepsis), bleeding, and anemia.
(3)Effects on pregnancy and breastfeeding. Girls and women should not become pregnant or breastfeed during treatment which harm the baby. (4)Effects on Dehydration and low blood pressure. Clofarabine (CAS NO.123318-82-1) can cause vomiting and diarrhea which may lead to low body fluid (dehydration). Signs and symptoms of dehydration include dizziness, lightheadedness, fainting spells, or decreased urination.
(5)Other side effects. The most common side effects are stomach problems (including vomiting, diarrhea, and nausea), and effects on blood cells (including low red blood cells count, low white blood cell count, low platelet count, fever, and infection. Clofarabine can also cause tachycardia and can affect the liver and kidneys.

Production of Clofarabine
The reaction flask was added 2-chloro-9-(2-deoxy-2-fluoro-3,5-di-O-benzoyl-beta-D arabinose yl) adenine 1.5g (3mmol) and methanol 40ml,mixed with stirring. Then it was added sodium methoxide, 0.05g (content> 50%), the reaction was stirred for 40min. Then the mixture was cooled to room temperature, adjusted to pH 7 with acetic acid, filtered, and the filter cake was washed with an ice-methanol 10ml, added to the methanol 40ml, and heated to 63 °C, and then cooled to -10 o C. Still 1h, filtered, and the filter cake was washed with an ice-methanol 10ml, drained, dried under reduced pressure to give an off-white powdery solid clofarabine 0.48g. The yield is 54%.
Production of Clofarabine

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