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123318-82-1

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123318-82-1 Usage

Anti-cancer drugs

Clofarabine is a novel purine nucleoside anticancer drugs is first successfully developed by the Top10 biopharmaceutical company of the United States---Genzyme Corporation, NASDAQ: GENZ) with the trade names being “Clofarabine”. On December 28, 2004 the US food and Drug Administration (FDA) used fast-track for approval of clofarabine for application to children with refractory or relapsed acute lymphocytic leukemia. It is currently the only available drugs for the special treatment of children with acute myelogenous leukemia (ALL); it has an excellent efficacy on the treatment of leukemia with well tolerance and no unpredictable adverse reactions. It can be administrated through either administered intravenously or administered orally. This drug is the first product approved for being dedicated to the treatment of the children's leukemia in more than ten years.

Pharmacological effects

Clofarabine has also combined the advantages of fludarabine and cladribine that can inhibit both DNA polymerase as well as inhibit ribonucleotide reductase with strong anti-cancer activity against different cell lines and tumor models. Early studies have also shown that the product, when having a concentration of micromolar or less, can already effectively inhibit the proliferation of human CNS tumors, lung cancer, kidney cancer, and leukemia and melanoma cell lines. In vivo and in vitro experiments have showed that clofarabine can induce apoptosis of leukemia cells with the mechanism being the down-regulation of de-phosphorylation of BCL-2 family proteins BCL-X and MCL-1 as well as the AKT. Its inhibitory effect on the human leukemia cells K-562 is stronger than cladribine and fluorine with the IC50 being 5 nmol/L while the IC50 for cladribine and fluorine is 16 nmol/L and 460nmol/L, respectively. Preclinical and drug combination experiments have showed that clofarabine, similar as other deoxynucleotide analogs as well as other types of anti-cancer drugs such as Etoposide, can enhance the activity of the deoxycytidine kinase in normal or abnormal human lymphocytes, and therefore increasing the anti-cancer effect.

Dosage

Clofarabine belongs to the anticancer drug which affects tubulin and is mainly used for clinical treatment of the following diseases: 1. treatment of relapsed or refractory acute lymphocytic leukemia; 2. it also has efficacy in treating acute myeloid leukemia and myelodysplastic syndrome (MDS) in older patients and can be used in combination with cytarabine. General adult dose: 1. relapsed or refractory acute lymphoblastic leukemia: suitable for the patient (1 to 21 years) should have previously received at least two kinds of treatment programs; take 52 mg/m2 daily X 5 days, have intravenous injection (more than 2 hours) until the organ get function recovery or return back to the baseline level, repeat 1 time every 2 to 6 weeks. 2. Acute myeloid leukemia and MDS: daily 52 mg/m2 × 5 days, have intravenous infusion for 1 hour; After 4 hours, administer cytarabine with 1 g(daily)/m2 X 5 days, perform intravenous infusion for 2 hours, it has positive effect for the newly diagnosed elderly patients with acute myelogenous leukemia and high-risk MDS. Child: It can be used for treating refractory and relapsed acute lymphocytic leukemia with the same amount for adults. For the treatment of the refractory and relapsed acute non-lymphocytic leukemia, use daily 52mg/m2 × 5 days, perform intravenous infusion (more than 2 hours) and repeat the treatment per 2-6 weeks depending on the reaction and toxicity in patients. The above information is edited by the lookchem of Dai Xiongfeng.

Adverse reactions and precautions

Common adverse reactions about clofarabine are as follows: Blood system: leukocytes and neutropenia, thrombocytopenia, anemia. Digestive system: loss of appetite, nausea, vomiting, abdominal pain, constipation; stomatitis, gingival bleeding, sore throat. Nervous System: fatigue, drowsiness, headache, dizziness; anxiety, depression; irritability, excitability. Cardiovascular System: tachycardia, hypertension, hypotension, transient systolic dysfunction of the left ventricular; the drug should be discontinued upon any causes of hypotension; it was occasionally observed in pediatric patient of capillary leak syndrome and systemic inflammatory response syndrome (SIRS) which can be prevented by administration of hormone during the 1st to 3rd day of treatment. During the medication, once the above syndrome occurs, it should be discontinued immediately and combined with concurrent support treatment. Once the condition is stabilized and the organ gets function recovery, the patients can re-initiate the administration from low dosage. Liver toxicity: reversible liver damage, increased level of aspartate aminotransferase, alanine aminotransferase and bilirubin; hepatomegaly and jaundice. Respiratory system: respiratory distress, coughing, pleural effusions. Urogenital: hematuria, secondary hyperuricemia, elevated level of serum creatinine and creatine. Other: dermatitis, erythema; muscle pain, joint pain; fever and infection. [Note] women of childbearing age should take care of contraception during medication, lactation women should stop breastfeeding. Patients of hypotension, dehydration, liver and kidney dysfunction as well as secondary infection of bone marrow suppression should take with caution. Clofarabine may cause tumor lysis syndrome and should drawn attention.

Category

toxic substances.

Flammability and hazard characteristics

It is combustible with fire decomposition releasing toxic nitrogen oxides; fluorides and chlorides fume.

Storage characteristics

warehouse: low-temperature, dry and ventilated.

Extinguishing media

Water, carbon dioxide, dry, sandy soil.

Description

Clofarabine is a new member of the purine nucleoside antimetabolite class of drugs, and it was launched as an intravenous infusion for treating pediatric patients (1–21 years old) with relapsed or refractory acute lymphoblastic leukemia (ALL) after at least two prior regimens. Adenosine-related antimetabolites, such as cladribine and fludarabine have proven successful in treating low-grade lymphomas, chronic lymphocytic leukemia, and hairy-cell leukemia. Although structurally similar to cladribine and fludarabine, a key differentiator for clofarabine is the presence of a fluorine in the C-2′ position, which renders it less susceptible to phosphorolytic cleavage of the glycosydic bond and inactivation by purine nucleoside phosphorylases. In addition, the C-2′ fluoro group improves the acid stability relative to its predecessors. As seen with other purine nucleoside analogs, the mechanism of action of clofarabine involves intracellular phosphorylation to active triphosphate by 2′ -deoxycytidine kinase, and subsequent inhibition of RNA reductase and DNA polymerase a. Clofarabine is cytotoxic to rapidly proliferating and quiescent cancer cell types in vitro.The higher potency of clofarabine relative to other purine nucleoside analogs is attributed to the higher efficiency of its phosphorylation by deoxycytidine kinase, and the longer intracellular half-life of the triphosphate metabolite (>24 h). The chemical synthesis of clofarabine involves the conversion of 2-deoxy-2-β-fluoro-1,3,5-tri-O-benzoyl- 1-α-D-arabinofuranose to the corresponding bromosugar with hydrogen bromide, subsequent coupling with 2-chloroadenine, and the removal of benzoyl protecting groups with catalytic sodium methoxide in methanol. The recommended pediatric dosage of clofarabine is 52mg/m2 daily, administered by i.v. infusion over 2 h, for 5 consecutive days. Treatment cycles are repeated following recovery or return to baseline organ function, approximately every 2–6weeks.Clinical efficacy of clofarabine was evaluated in a single-arm study involving 49 pediatric patients, who had relapsed or failed two or more prior therapies. Fifteen patients (30.6%) demonstrated either a complete remission, a complete remission minus platelet recovery, or a partial response. For patients experiencing complete remission, the response lasted from 43 days to >160 days. Adverse events associated with clofarabine were similar to other chemotherapy agents, including vomiting, nausea, febrile neutropenia, and diarrhea.

Chemical Properties

White Solid

Originator

Southern Research Institute (US)

Uses

Different sources of media describe the Uses of 123318-82-1 differently. You can refer to the following data:
1. Clofarabine has been used in a cell viability assay to analyze the sensitivity of the isogenic cell lines towards clofarabine. It is also used to study the interaction of anticancer drug clofarabine with human serum albumin and human α-1 acid glycoprotein.
2. ISecond generation purine nucleoside analog; antimetabolite that inhibits DNA synthesis and resists deamination by adenosine deaminase. Antineoplastic

Definition

ChEBI: A purine nucleoside analogue consisting of a 6-amino-2-chloropurin-9-yl group attached to the 1beta position of 2'-deoxy-2'-fluoro-D-arabinofuranose. It is metabolized intracellularly to the active 5'-triphosphate metaboli e, which inhibits DNA synthesisis and so stops the growth of cancer cells. Clofarabine is used as an antimetabolite antineoplastic agent in the treatment of relapsed or refractory acute lymphoblastic leukaemia.

Brand name

Clolar

Biological Activity

Deoxycytidine kinase (dCK) substrate. Phosphorylated to form clofarabine triphosphate, which competes with dATP for DNA polymerase- α and - ε and potently inhibits ribonucleotide reductase (IC 50 = 65 nM). Induces apoptosis by directly altering mitochondrial transmembrane potential. Demonstrates growth inhibition and cytotoxic activity in a variety of leukemias and solid tumors.

Biochem/physiol Actions

Clofarabine is a second-generation nucleoside analog, used in cancer treatments. Clofarabine is metabolized to 5′-triphosphate and is known to block DNA synthesis. The human equilibrative nucleoside transporters (hENT1 and hENT2) and human concentrative nucleoside transporter (hCNT2 and hCNT3) mediates clofarabine transport into the cell. It also serves as a substrate for mitochondrial deoxyguanosine kinase. Clofarabine is an inhibitor of ribonucleotide reductase. It resists the phosphorolytic cleavage catalyzed by purine nucleoside phosphorylase of bacterias. Clofarabine also withstands deamination by adenosine deaminase.

Synthesis

The drug was discovered by Ilex oncology (now Genzyme) and currently marketed by Genzyme [3,6]. Several routes to the synthesis of clofarabine have been published, including a process scale-up chemistry as shown in the Scheme. Treatment of commercially available 2-deoxy-2-β-fluoro-1,3,5-tri- O-benzoyl-1-R-D-arabinofuranose (6) with 33%HBr in acetic acid provided the bromo sugar 7 in 88% yield. The bromide 7 was reacted with 2-chloroadenine (8) in optimized mixed solvent system in the presence of calcium hydride and potassium t-butoxide to give the desired β-anomeric product 9 in 50:1 ratio. Deprotection of the benzoyl groups with sodium methoxide then provided clofarabine (II).

Check Digit Verification of cas no

The CAS Registry Mumber 123318-82-1 includes 9 digits separated into 3 groups by hyphens. The first part of the number,starting from the left, has 6 digits, 1,2,3,3,1 and 8 respectively; the second part has 2 digits, 8 and 2 respectively.
Calculate Digit Verification of CAS Registry Number 123318-82:
(8*1)+(7*2)+(6*3)+(5*3)+(4*1)+(3*8)+(2*8)+(1*2)=101
101 % 10 = 1
So 123318-82-1 is a valid CAS Registry Number.
InChI:InChI=1/C10H11ClFN5O3/c11-10-15-7(13)5-8(16-10)17(2-14-5)9-4(12)6(19)3(1-18)20-9/h2-4,6,9,18-19H,1H2,(H2,13,15,16)/t3-,4-,6?,9-/m1/s1

123318-82-1 Well-known Company Product Price

  • Brand
  • (Code)Product description
  • CAS number
  • Packaging
  • Price
  • Detail
  • TCI America

  • (C2500)  Clofarabine  >98.0%(HPLC)(T)

  • 123318-82-1

  • 20mg

  • 890.00CNY

  • Detail
  • TCI America

  • (C2500)  Clofarabine  >98.0%(HPLC)(T)

  • 123318-82-1

  • 100mg

  • 2,990.00CNY

  • Detail
  • Sigma

  • (C7495)  Clofarabine  ≥98% (HPLC)

  • 123318-82-1

  • C7495-5MG

  • 1,020.24CNY

  • Detail
  • Sigma

  • (C7495)  Clofarabine  ≥98% (HPLC)

  • 123318-82-1

  • C7495-25MG

  • 4,107.87CNY

  • Detail

123318-82-1SDS

SAFETY DATA SHEETS

According to Globally Harmonized System of Classification and Labelling of Chemicals (GHS) - Sixth revised edition

Version: 1.0

Creation Date: Aug 10, 2017

Revision Date: Aug 10, 2017

1.Identification

1.1 GHS Product identifier

Product name clofarabine

1.2 Other means of identification

Product number -
Other names 2-chloro-2'-arabino-fluoro-2'-deoxyadenosine

1.3 Recommended use of the chemical and restrictions on use

Identified uses For industry use only.
Uses advised against no data available

1.4 Supplier's details

1.5 Emergency phone number

Emergency phone number -
Service hours Monday to Friday, 9am-5pm (Standard time zone: UTC/GMT +8 hours).

More Details:123318-82-1 SDS

123318-82-1Synthetic route

6-amino-2-chloro-9-(2'-deoxy-2'-fluoro-3',5'-di-O-benzoyl-β-D-arabinofuranosyl)-9H-purine
355138-50-0

6-amino-2-chloro-9-(2'-deoxy-2'-fluoro-3',5'-di-O-benzoyl-β-D-arabinofuranosyl)-9H-purine

clofarabine
123318-82-1

clofarabine

Conditions
ConditionsYield
With methanol; sodium methylate at 15 - 20℃; for 2h;95.41%
With methanol; sodium methylate at 20℃; for 2h; pH=9 - 10; Reagent/catalyst; Green chemistry;95.5%
With methanol; sodium methylate at 0℃; for 2h;95.5%
6-amino-2-chloro-9-(2-deoxy-2-fluoro-3,5-di-O-(triisopropylsilyl)-β-D-arabinofuranosyl)-9H-purine
1234346-14-5

6-amino-2-chloro-9-(2-deoxy-2-fluoro-3,5-di-O-(triisopropylsilyl)-β-D-arabinofuranosyl)-9H-purine

clofarabine
123318-82-1

clofarabine

Conditions
ConditionsYield
With tetramethylammonium fluoride; acetic acid In N,N-dimethyl-formamide at 20℃;90%
With tetramethylammonium fluoride; acetic acid In N,N-dimethyl-formamide at 20℃;90%
C25H19ClF3N5O8S

C25H19ClF3N5O8S

clofarabine
123318-82-1

clofarabine

Conditions
ConditionsYield
With ammonia In methanol at 60℃; for 5h;90%
2-chloro-6-heptanoylamido-9-(2-deoxy-2-fluoro-3,5-di-O-benzoyl-β-D-arabinofuranosyl)-9H-purine

2-chloro-6-heptanoylamido-9-(2-deoxy-2-fluoro-3,5-di-O-benzoyl-β-D-arabinofuranosyl)-9H-purine

clofarabine
123318-82-1

clofarabine

Conditions
ConditionsYield
60%
2-deoxy-2-fluoro-α,β-D-arabinofuranose 1-phosphate

2-deoxy-2-fluoro-α,β-D-arabinofuranose 1-phosphate

2-chloroadenine
1839-18-5

2-chloroadenine

clofarabine
123318-82-1

clofarabine

Conditions
ConditionsYield
With recombinant E.coli purine nucleoside phosphorylase In water at 52℃; for 168h; Enzymatic reaction;42%
2,6-dichloro-9-(3-O-acetyl-5-O-benzoyl-2-deoxy-2-fluoro-β-D-arabinofuranosyl)-9H-purine
103884-99-7

2,6-dichloro-9-(3-O-acetyl-5-O-benzoyl-2-deoxy-2-fluoro-β-D-arabinofuranosyl)-9H-purine

clofarabine
123318-82-1

clofarabine

Conditions
ConditionsYield
With lithium hydroxide; ammonia 1.) ethanol, RT, 3 d, 2.) acetonitrile, RT, 3 h; Yield given. Multistep reaction;
2-chloro-9-(3',5'-di-O-benzoyl-β-D-ribofuranosyl)adenine
1353040-42-2

2-chloro-9-(3',5'-di-O-benzoyl-β-D-ribofuranosyl)adenine

clofarabine
123318-82-1

clofarabine

Conditions
ConditionsYield
Multi-step reaction with 3 steps
1.1: pyridine / dichloromethane / 0 - 20 °C / Inert atmosphere
2.1: guanidine carbonate / dichloromethane; ethyl acetate / 60 °C
2.2: 80 °C
3.1: sodium methylate; methanol / 30 - 40 °C
View Scheme
Multi-step reaction with 3 steps
1: pyridine; dichloromethane / 0 - 20 °C / Inert atmosphere
2: guanidine hydrogen carbonate; triethylamine hydrofluoride / ethyl acetate / 20 - 80 °C
3: sodium methylate / methanol / 30 - 40 °C
View Scheme
Multi-step reaction with 3 steps
1: pyridine / dichloromethane / 0.5 h / -10 - 0 °C / Inert atmosphere
2: N-ethyl-N,N-diisopropylamine; triethylamine tris(hydrogen fluoride) / toluene / 48 h / 35 - 40 °C
3: sodium methylate / methanol / 0.5 h / 30 °C
View Scheme
6-amino-2-chloro-9-(2',3',5'-tri-O-benzoyl-β-D-ribofuranosyl)-9H-purine
1055168-98-3

6-amino-2-chloro-9-(2',3',5'-tri-O-benzoyl-β-D-ribofuranosyl)-9H-purine

clofarabine
123318-82-1

clofarabine

Conditions
ConditionsYield
Multi-step reaction with 4 steps
1.1: pyridine; hydrazine hydrate; acetic acid / 75 - 80 °C / Inert atmosphere
2.1: pyridine / dichloromethane / 0 - 20 °C / Inert atmosphere
3.1: guanidine carbonate / dichloromethane; ethyl acetate / 60 °C
3.2: 80 °C
4.1: sodium methylate; methanol / 30 - 40 °C
View Scheme
Multi-step reaction with 4 steps
1.1: pyridine; hydrazine hydrate; acetic acid / 75 - 80 °C / Inert atmosphere
1.2: 65 °C
2.1: pyridine / dichloromethane / 0 - 20 °C / Inert atmosphere
3.1: guanidine carbonate / dichloromethane; ethyl acetate / 60 °C
3.2: 80 °C
4.1: sodium methylate; methanol / 30 - 40 °C
View Scheme
Multi-step reaction with 4 steps
1: hydrazine / pyridine; acetic acid / 20 - 80 °C / Inert atmosphere
2: pyridine; dichloromethane / 0 - 20 °C / Inert atmosphere
3: guanidine hydrogen carbonate; triethylamine hydrofluoride / ethyl acetate / 20 - 80 °C
4: sodium methylate / methanol / 30 - 40 °C
View Scheme
2-chloro-9-(3',5'-di-O-benzoyl-2'-O-trifluoromethylsulfonyl-β-D-ribofuranosyl)adenine
1353040-43-3

2-chloro-9-(3',5'-di-O-benzoyl-2'-O-trifluoromethylsulfonyl-β-D-ribofuranosyl)adenine

clofarabine
123318-82-1

clofarabine

Conditions
ConditionsYield
Multi-step reaction with 2 steps
1: N-ethyl-N,N-diisopropylamine; triethylamine tris(hydrogen fluoride) / toluene / 48 h / 35 - 40 °C
2: sodium methylate / methanol / 0.5 h / 30 °C
View Scheme
2-deoxy-2-fluoro-3,5-di-O-benzoyl-α-D-arabinofuranosyl bromide
97614-44-3

2-deoxy-2-fluoro-3,5-di-O-benzoyl-α-D-arabinofuranosyl bromide

clofarabine
123318-82-1

clofarabine

Conditions
ConditionsYield
Multi-step reaction with 2 steps
1: sodium iodide / acetonitrile; tert-Amyl alcohol / 24 h / 20 °C / Inert atmosphere
2: sodium methylate / methanol / 7 h / 33 °C / Inert atmosphere
View Scheme
Multi-step reaction with 2 steps
1.1: potassium tert-butylate / acetonitrile; 1,2-dichloro-ethane; tert-Amyl alcohol / 19 h / 50 °C / Inert atmosphere
2.1: sodium methylate / methanol / 5 h / 20 °C / Inert atmosphere
2.2: 20 - 64 °C
View Scheme
Multi-step reaction with 3 steps
1: calcium hydride; sodium hydride / dichloromethane; acetonitrile / 20 °C / Inert atmosphere
2: ammonia / acetonitrile / 20 °C
3: sodium methylate / methanol / 0.67 h / 30 - 35 °C
View Scheme
2-deoxy-2-fluoro-α,β-D-arabinofuranose 1-phosphate (2Li+ SALT)

2-deoxy-2-fluoro-α,β-D-arabinofuranose 1-phosphate (2Li+ SALT)

clofarabine
123318-82-1

clofarabine

Conditions
ConditionsYield
Multi-step reaction with 2 steps
1: hydrogenchloride / water / pH 7.5
2: recombinant E.coli purine nucleoside phosphorylase / water / 168 h / 52 °C / Enzymatic reaction
View Scheme
2-chloroadenine
1839-18-5

2-chloroadenine

1-(2'-deoxy-2'-fluoro-β-D-arabinofuranosyl)uracil
69123-94-0

1-(2'-deoxy-2'-fluoro-β-D-arabinofuranosyl)uracil

clofarabine
123318-82-1

clofarabine

Conditions
ConditionsYield
Stage #1: 2-chloroadenine; 1-(2'-deoxy-2'-fluoro-β-D-arabinofuranosyl)uracil In aq. buffer at 50℃; for 0.5h; pH=6.5;
Stage #2: With nucleoside deoxyribosyltransferase enzyme (NDT enzyme) In aq. buffer at 50℃; Concentration; Solvent; Temperature; Enzymatic reaction;
2-Chloroadenosine
146-77-0

2-Chloroadenosine

clofarabine
123318-82-1

clofarabine

Conditions
ConditionsYield
Multi-step reaction with 4 steps
1.1: pyridine / acetonitrile / 0.5 h / -5 - 5 °C
1.2: Reflux
2.1: pyridine / dichloromethane / 0.5 h / -10 - 0 °C / Inert atmosphere
3.1: N-ethyl-N,N-diisopropylamine; triethylamine tris(hydrogen fluoride) / toluene / 48 h / 35 - 40 °C
4.1: sodium methylate / methanol / 0.5 h / 30 °C
View Scheme
Multi-step reaction with 4 steps
1: pyridine / acetonitrile / 0.5 h / -5 - 5 °C
2: pyridine / dichloromethane / 0.5 h / -10 - 0 °C / Inert atmosphere
3: N-ethyl-N,N-diisopropylamine; triethylamine tris(hydrogen fluoride) / toluene / 48 h / 35 - 40 °C
4: sodium methylate / methanol / 0.5 h / 30 °C
View Scheme
clofarabine
123318-82-1

clofarabine

Conditions
ConditionsYield
Multi-step reaction with 5 steps
1.1: hydrogenchloride; potassium dihydrogenphosphate; potassium hydroxide / water; dimethyl sulfoxide / 4 h / 58 - 61 °C / pH 7.1-7.2 / Enzymatic reaction
2.1: pyridine / acetonitrile / 0.5 h / -5 - 5 °C
2.2: Reflux
3.1: pyridine / dichloromethane / 0.5 h / -10 - 0 °C / Inert atmosphere
4.1: N-ethyl-N,N-diisopropylamine; triethylamine tris(hydrogen fluoride) / toluene / 48 h / 35 - 40 °C
5.1: sodium methylate / methanol / 0.5 h / 30 °C
View Scheme
Multi-step reaction with 5 steps
1: hydrogenchloride; potassium dihydrogenphosphate; potassium hydroxide / water; dimethyl sulfoxide / 4 h / 58 - 61 °C / pH 7.1-7.2 / Enzymatic reaction
2: pyridine / acetonitrile / 0.5 h / -5 - 5 °C
3: pyridine / dichloromethane / 0.5 h / -10 - 0 °C / Inert atmosphere
4: N-ethyl-N,N-diisopropylamine; triethylamine tris(hydrogen fluoride) / toluene / 48 h / 35 - 40 °C
5: sodium methylate / methanol / 0.5 h / 30 °C
View Scheme
uridine
58-96-8

uridine

clofarabine
123318-82-1

clofarabine

Conditions
ConditionsYield
Multi-step reaction with 5 steps
1.1: hydrogenchloride; potassium dihydrogenphosphate; potassium hydroxide / water; dimethyl sulfoxide / 4 h / 58 - 61 °C / pH 7.1-7.2 / Enzymatic reaction
2.1: pyridine / acetonitrile / 0.5 h / -5 - 5 °C
2.2: Reflux
3.1: pyridine / dichloromethane / 0.5 h / -10 - 0 °C / Inert atmosphere
4.1: N-ethyl-N,N-diisopropylamine; triethylamine tris(hydrogen fluoride) / toluene / 48 h / 35 - 40 °C
5.1: sodium methylate / methanol / 0.5 h / 30 °C
View Scheme
Multi-step reaction with 5 steps
1: hydrogenchloride; potassium dihydrogenphosphate; potassium hydroxide / water; dimethyl sulfoxide / 4 h / 58 - 61 °C / pH 7.1-7.2 / Enzymatic reaction
2: pyridine / acetonitrile / 0.5 h / -5 - 5 °C
3: pyridine / dichloromethane / 0.5 h / -10 - 0 °C / Inert atmosphere
4: N-ethyl-N,N-diisopropylamine; triethylamine tris(hydrogen fluoride) / toluene / 48 h / 35 - 40 °C
5: sodium methylate / methanol / 0.5 h / 30 °C
View Scheme
1-O-acetyl-2,3,5-tri-O-benzoyl-D-ribofuranose
14215-97-5

1-O-acetyl-2,3,5-tri-O-benzoyl-D-ribofuranose

clofarabine
123318-82-1

clofarabine

Conditions
ConditionsYield
Multi-step reaction with 3 steps
1.1: hydrogen bromide; tetrabutyl ammonium fluoride / tetrahydrofuran / 3 h / Cooling with ice
1.2: 2 h
2.1: potassium tert-butylate; calcium hydride / acetonitrile; tert-butyl alcohol / 1 h / 60 °C
2.2: 10 h / 60 °C
3.1: sodium methylate; methanol / 2 h / 0 °C
View Scheme
clofarabine
123318-82-1

clofarabine

tert-butyldimethylsilyl chloride
18162-48-6

tert-butyldimethylsilyl chloride

6-amino-2-chloro-9-(2'-deoxy-2'-fluoro-3',5'-di-O-tert-butyldimethylsilyl-β-D-arabinofuranosyl)-9H-purine

6-amino-2-chloro-9-(2'-deoxy-2'-fluoro-3',5'-di-O-tert-butyldimethylsilyl-β-D-arabinofuranosyl)-9H-purine

Conditions
ConditionsYield
With 1H-imidazole In N,N-dimethyl-formamide at 20℃;93%
clofarabine
123318-82-1

clofarabine

tert-butylchlorodiphenylsilane
58479-61-1

tert-butylchlorodiphenylsilane

(2R,3R,4S,5R)-5-(6-amino-2-chloro-9H-purin-9-yl)-2-(((tert-butyldiphenylsilyl)oxy)methyl)-4-fluorotetrahydrofuran-3-ol

(2R,3R,4S,5R)-5-(6-amino-2-chloro-9H-purin-9-yl)-2-(((tert-butyldiphenylsilyl)oxy)methyl)-4-fluorotetrahydrofuran-3-ol

Conditions
ConditionsYield
With 1H-imidazole In N,N-dimethyl-formamide at 0 - 20℃; Inert atmosphere;91%
With 1H-imidazole In N,N-dimethyl-formamide at 0 - 20℃; for 8h;4.1 g
With 1H-imidazole In N,N-dimethyl-formamide at 0 - 20℃; for 8h;4.1 g
1,3-Dichloro-1,1,3,3-tetraisopropyldisiloxane
69304-37-6

1,3-Dichloro-1,1,3,3-tetraisopropyldisiloxane

clofarabine
123318-82-1

clofarabine

A

2-chloro-9-[2-deoxy-2-fluoro-3,5-O-(1,1,3,3-tetraisopropyldisiloxane-1,3-diyl)-β-D-arabinofuranosyl]adenine
1450815-72-1

2-chloro-9-[2-deoxy-2-fluoro-3,5-O-(1,1,3,3-tetraisopropyldisiloxane-1,3-diyl)-β-D-arabinofuranosyl]adenine

B

2-chloro-9-[2-deoxy-2-fluoro-5-O-(1-hydroxy-1,1,3,3-tetraisopropyldisiloxane-3-yl)-β-D-arabinofuranosyl]adenine
1450815-73-2

2-chloro-9-[2-deoxy-2-fluoro-5-O-(1-hydroxy-1,1,3,3-tetraisopropyldisiloxane-3-yl)-β-D-arabinofuranosyl]adenine

C

C32H48Cl2F2N10O7Si2
1450815-74-3

C32H48Cl2F2N10O7Si2

Conditions
ConditionsYield
With pyridine at 20℃; for 24h;A 87%
B 9%
C 2%
clofarabine
123318-82-1

clofarabine

9-(2-deoxy-2-fluoro-β-D-arabinofuranosyl)adenine
20187-82-0, 20227-41-2, 64183-27-3, 123334-75-8

9-(2-deoxy-2-fluoro-β-D-arabinofuranosyl)adenine

Conditions
ConditionsYield
With ammonia; hydrogen; palladium on activated charcoal In ethanol; water at 20℃; for 18h;82%
With palladium 10% on activated carbon; hydrogen In methanol at 20℃; for 48h;57%
phosphoric acid-(2R-decyloxy-3-dodecyoxo)propyl ester

phosphoric acid-(2R-decyloxy-3-dodecyoxo)propyl ester

clofarabine
123318-82-1

clofarabine

[2-chloro-9-(2'-deoxy-2'-fluoro-β-D-arabinofuranosyl)adenine]-5'-phosphoric acid-(2R-decyloxy-3-dodecyloxy)propyl ester

[2-chloro-9-(2'-deoxy-2'-fluoro-β-D-arabinofuranosyl)adenine]-5'-phosphoric acid-(2R-decyloxy-3-dodecyloxy)propyl ester

Conditions
ConditionsYield
Stage #1: phosphoric acid-(2R-decyloxy-3-dodecyoxo)propyl ester With pyridine; 2,4,6-triisopropylphenylsulfonyl chloride at 20 - 25℃; for 1h; Inert atmosphere;
Stage #2: clofarabine for 20h; Inert atmosphere;
Stage #3: With sodium methylate In methanol pH=7; Inert atmosphere;
76%
benzoyl chloride
98-88-4

benzoyl chloride

clofarabine
123318-82-1

clofarabine

2-chloro-N6-benzoyl-9-(2'-deoxy-2'-fluoro-β-D-arabinofuranosyl)adenine

2-chloro-N6-benzoyl-9-(2'-deoxy-2'-fluoro-β-D-arabinofuranosyl)adenine

Conditions
ConditionsYield
Stage #1: clofarabine With pyridine; chloro-trimethyl-silane at 0℃; for 0.5h;
Stage #2: benzoyl chloride at 20℃; for 24h;
76%
clofarabine
123318-82-1

clofarabine

p-toluenesulfonyl chloride
98-59-9

p-toluenesulfonyl chloride

((2R,3R,4S,5R)-5-(6-amino-2-chloro-9H-purin-9-yl)-4-fluoro-3-hydroxytetrahydrofuran-2-yl)methyl 4-methylbenzenesulfonate

((2R,3R,4S,5R)-5-(6-amino-2-chloro-9H-purin-9-yl)-4-fluoro-3-hydroxytetrahydrofuran-2-yl)methyl 4-methylbenzenesulfonate

Conditions
ConditionsYield
With pyridine at 0 - 20℃; for 24h;76%
clofarabine
123318-82-1

clofarabine

phenyl(benzyloxy-L-alaninyl)phosphorochloridate
183370-70-9

phenyl(benzyloxy-L-alaninyl)phosphorochloridate

CPF448

CPF448

Conditions
ConditionsYield
With pyridine; 1-methyl-1H-imidazole In tetrahydrofuran at -80 - 20℃; for 12.2667h;66%
P,P'-methanediyl-bis-phosphonic acid tetrachloride
1499-29-2

P,P'-methanediyl-bis-phosphonic acid tetrachloride

clofarabine
123318-82-1

clofarabine

C11H12ClFN5O8P2(3-)*3Na(1+)

C11H12ClFN5O8P2(3-)*3Na(1+)

Conditions
ConditionsYield
Stage #1: P,P'-methanediyl-bis-phosphonic acid tetrachloride; clofarabine With triethyl phosphate at 0℃; Inert atmosphere;
Stage #2:
63%
di-tert-butyl dicarbonate
24424-99-5

di-tert-butyl dicarbonate

clofarabine
123318-82-1

clofarabine

(2R,3R,4S,5R)-5-(6-amino-2-chloropurin-9-yl)-3-tert-butyloxycarbonyloxy-4-fluoro-2-(hydroxymethyl)oxolane

(2R,3R,4S,5R)-5-(6-amino-2-chloropurin-9-yl)-3-tert-butyloxycarbonyloxy-4-fluoro-2-(hydroxymethyl)oxolane

Conditions
ConditionsYield
With sodium hydroxide In tetrahydrofuran; water at 20℃; for 18h;58%
With sodium hydroxide In tetrahydrofuran; water at 20℃; for 18h;58%
clofarabine
123318-82-1

clofarabine

6-Amino-9-((2R,3S,4R,5R)-3-fluoro-4-hydroxy-5-hydroxymethyl-tetrahydro-furan-2-yl)-3,9-dihydro-purin-2-one

6-Amino-9-((2R,3S,4R,5R)-3-fluoro-4-hydroxy-5-hydroxymethyl-tetrahydro-furan-2-yl)-3,9-dihydro-purin-2-one

Conditions
ConditionsYield
With lithium hydroxide; dihydrogen peroxide In water at 60℃; for 24h;48%
sodium methylate
124-41-4

sodium methylate

clofarabine
123318-82-1

clofarabine

C11H14FN5O4

C11H14FN5O4

Conditions
ConditionsYield
In methanol at 60℃; for 168h; Inert atmosphere;48%
clofarabine
123318-82-1

clofarabine

C10H12FN5O4

C10H12FN5O4

Conditions
ConditionsYield
With dihydrogen peroxide; lithium hydroxide In water at 60℃; for 24h; Inert atmosphere;48%
phosphoric acid-(2S-decyloxy-3-dodecyloxoy)propyl ester

phosphoric acid-(2S-decyloxy-3-dodecyloxoy)propyl ester

clofarabine
123318-82-1

clofarabine

[2-chloro-9-(2'-deoxy-2'-fluoro-β-D-arabinofuranosyl)adenine]-5'-phosphoric acid-(2S-decyloxy-3-dodecyloxy)propyl ester

[2-chloro-9-(2'-deoxy-2'-fluoro-β-D-arabinofuranosyl)adenine]-5'-phosphoric acid-(2S-decyloxy-3-dodecyloxy)propyl ester

Conditions
ConditionsYield
Stage #1: phosphoric acid-(2S-decyloxy-3-dodecyloxoy)propyl ester With pyridine; 2,4,6-triisopropylphenylsulfonyl chloride at 20 - 25℃; Inert atmosphere;
Stage #2: clofarabine Inert atmosphere;
Stage #3: With sodium methylate In methanol pH=7; Inert atmosphere;
28%
clofarabine
123318-82-1

clofarabine

C10H10ClN5O3

C10H10ClN5O3

Conditions
ConditionsYield
With sodium hydroxide In dimethyl sulfoxide at 54℃; for 3.5h; Inert atmosphere;25%
C13H19ClNO4P*ClH

C13H19ClNO4P*ClH

clofarabine
123318-82-1

clofarabine

C23H29ClFN6O7P

C23H29ClFN6O7P

Conditions
ConditionsYield
With copper(II) bis(trifluoromethanesulfonate); triethylamine In tetrahydrofuran at 20℃; for 12h;15%
2-fluoro-9-(2-deoxy-2-fluoro-β-D-arabinofuranosyl)-9H-purin-6-amine
134217-15-5

2-fluoro-9-(2-deoxy-2-fluoro-β-D-arabinofuranosyl)-9H-purin-6-amine

clofarabine
123318-82-1

clofarabine

C20H21ClF2N10O6

C20H21ClF2N10O6

Conditions
ConditionsYield
With sodium hydroxide In water at 80℃; for 1.9h; Inert atmosphere;0.8%
clofarabine
123318-82-1

clofarabine

A

2-chloroadenine
1839-18-5

2-chloroadenine

B

2-deoxy-2-fluoro-α-D-arabinofuranose 1-phosphate
850883-62-4

2-deoxy-2-fluoro-α-D-arabinofuranose 1-phosphate

Conditions
ConditionsYield
With E. coli purine nucleoside phosphorylase Enzyme kinetics; Substitution;
clofarabine
123318-82-1

clofarabine

(2R,3R,4S,5R)-5-(6-benzamido-9H-purin-9-yl)-2-((bis(4-methoxyphenyl)(phenyl)methoxy)methyl)-4-fluorotetrahydrofuran-3-yl (2-cyanoethyl) diisopropylphosphoramidite

(2R,3R,4S,5R)-5-(6-benzamido-9H-purin-9-yl)-2-((bis(4-methoxyphenyl)(phenyl)methoxy)methyl)-4-fluorotetrahydrofuran-3-yl (2-cyanoethyl) diisopropylphosphoramidite

Conditions
ConditionsYield
Multi-step reaction with 2 steps
1.1: 82 percent / H2; NH3 / Pd/C / ethanol; H2O / 18 h / 20 °C
2.1: pyridine / 18 h / 20 °C
2.2: 72 percent / pyridine / 18 h / 20 °C
View Scheme

123318-82-1Relevant articles and documents

A new process for antineoplastic agent clofarabine

Bauta, William E.,Schulmeier, Brian E.,Burke, Brian,Puente, Jose F.,Cantrell Jr., William R.,Lovett, Dennis,Goebel, James,Anderson, Bruce,Ionescu, Dumitru,Guo, Ruichao

, p. 889 - 896 (2004)

Clofarabine is a promising DNA polymerase inhibitor currently in clinical trials for a variety of liquid and solid tumor indications. The efforts for development of a new manufacturing process for clofarabine are presented. This new process allows for the reliable and efficient production of drug substance in high anomeric excess and high overall purity, without using chromatography. The high anomeric selectivity is achieved by reacting 2-chloroadenine with 1-bromo-2-deoxy-2-fluoro-3,5-di-O-benzoyl-α-D-ribofuranose (4) and potassium tert-butoxide in a mixture of three solvents. Following crystallization, anomeric ratios exceeding 50 (β/α) are achieved. Deprotection and additional crystallization afford a clofarabine drug substance containing less than 0.1% of the α-anomer.

A green synthetic clofarabine pharmaceutical intermediates (by machine translation)

-

Paragraph 0021; 0022; 0023, (2019/02/25)

The invention relates to a green synthetic clofarabine medical intermediates, in particular comprises the following steps: The formula II compound is dissolved in the organic solvent, under ice bath by adding 40% of the hydrobromic, tetrabutyl ammonium fluoride, stirring for 3 hours, adding triethylamine three [...], continuing to stir 2 - 3 hours, [...] I compound. (by machine translation)

METHOD FOR THE SYNTHESIS OF CLOFARABINE

-

Paragraph 0064, (2017/04/11)

The present invention relates to a method for the high yield production of the anticancer nucleoside clofarabine, the method comprising the preparation of 2-chloroadenosine by enzymatic transglycosylation between 2-chloroadenine and nucleosides, benzoylation, isomerization, sulfonate ester formation, fluorination, and deprotection.

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