PRACTICAL SYNTHETIC PROCEDURES
Polyfunctionalized 2,6-Dimethoxypyrimidines
3919
1H NMR (CDCl3, 200 MHz): d = 6.22–6.18 (m, 1 H) 5.48–5.44 (m,
1 H), 4.28 (dq, J = 1.3, 7.1 Hz, 2 H), 4.12 (dq, J = 1.5, 7.1 Hz, 2 H),
3.93 (d, J = 1.5 Hz, 3 H), 3.88 (d, J = 1.3 Hz, 3 H), 3.77–3.73 (m, 2
H), 1.28 (dt, J = 1.3, 7.0 Hz, 3 H), 1.17 (dt, J = 1.5, 7.0 Hz, 3 H).
13C NMR (CDCl3, 75 MHz): d = 169.5, 169.0, 166.8, 165.7, 164.7,
137.2, 127.0, 108.3, 61.7, 61.0, 55.2, 54.7, 38.0, 14.4, 14.3.
MS (EI, 70 eV): m/z (%) = 324 (M+, 30), 295 (100), 279 (40), 251
(53), 223 (24), 205 (14).
HRMS (EI): m/z calcd for C15H20N2O6 [M+]: 324.1321; found:
324.1330.
(4-Chloro-2,6-dimethoxypyrimidin-5-yl)pentafluorophenyl-
methanone (3i)
The organozinc solution of 2d in THF (1.1 mmol) was decanted and
carefully transferred from the rest of Zn powder using a syringe to
a dry argon-flushed flask and cooled to –30 °C. A solution of
CuCN·2LiCl (1 M in THF, 0.5 equiv) was added and the mixture
was stirred at –30 °C for 30 min. Pentafluorobenzoyl chloride (323
mg, 1.3 equiv, 1.4 mmol) was then added at –30 °C. The mixture
was stirred at –30 °C for 1 h and then slowly warmed to 25 °C. The
mixture was quenched with sat. aq NH4Cl (10 mL), and the aqueous
layer was extracted with EtOAc (4 × 10 mL). The combined organ-
ic extracts were dried (Na2SO4) and concentrated in vacuo. The
crude residue was purified by column chromatography (30% Et2O–
pentane) to give 3i (349 mg, 86%) as a white solid; mp 120.3–
122.9 °C.
4-(4-Chloro-2,6-dimethoxypyrimidin-5-yl)benzoic Acid Ethyl
Ester (3d)
A flame-dried round-bottomed flask was charged with Pd(dba)2 (24
mg, 5 mol%), P(o-furyl)3 (20 mg, 10 mol%), and THF (0.9 mL).
The mixture was stirred at 25 °C for 10 min, and then transferred to
the reaction flask containing an organozinc solution of 2d (0.85
mmol, prepared according to Procedure 4) and ethyl 4-iodoben-
zoate (282 mg, 1.2 equiv, 1.02 mmol). The mixture was stirred at
25 °C for 2 h, then quenched with sat. aq NH4Cl (25 mL), and the
aqueous layer was extracted with EtOAc (4 × 25 mL). The com-
bined organic extracts were dried (Na2SO4) and concentrated in
vacuo. The crude residue was purified by column chromatography
(30% Et2O–pentane) to give 3d (250 mg, 91%) as a white
solid; mp 101.4–103.0 °C.
IR (neat): 1693 (m), 1571 (s), 1521 (s), 1490 (s), 1464 (s), 1395 (m),
1367 (m), 1334 (m), 1309 (m), 1219 (s), 1192 (m), 1081 (s), 1030
(s), 976 (s), 937 cm–1 (s).
1H NMR (CDCl3, 300 MHz): d = 4.00 (s, 3 H), 3.90 (s, 3 H).
13C NMR (CDCl3, 75 MHz): d = 181.0, 169.8, 164.7, 159.9, 147.1,
145.4, 143.6, 142.0, 139.5, 136.1, 113.7, 56.2, 55.7.
MS (EI, 70 eV): m/z (%) = 368 (M+, 100), 338 (32), 201 (68), 195
(47), 167 (25), 117 (11), 76 (26).
HRMS (EI): m/z calcd for C13H6ClF5N2O3 [M+]: 367.9987; found:
367.9965.
IR (neat): 1717 (s), 1587 (m), 1538 (s), 1461 (m), 1375 (s), 1271 (s),
1092 (s), 1022 (s), 937 cm–1 (m).
1H NMR (CDCl3, 300 MHz): d = 8.06–8.00 (m, 2 H), 7.34–7.27 (m,
2 H), 4.33 (q, J = 7.1 Hz, 2 H), 3.98 (s, 3 H), 3.87 (s, 3 H), 1.33 (t,
J = 7. 1 Hz, 3 H).
13C NMR (CDCl3, 75 MHz): d = 169.7, 166.5, 163.7, 159.7, 136.8,
130.7 (2 C), 130.5, 129.7 (2 C), 113.7, 61.3, 55.7, 55.3, 14.6.
MS (EI, 70 eV): m/z (%) = 322 (M+, 100), 293 (15), 277 (63), 234
(14), 199 (8), 177 (7), 170 (8), 114 (9).
HRMS (EI): m/z calcd for C15H15ClN2O4 [M+]: 322.0720; found:
322.0697.
(4-Chloro-2,6-dimethoxypyrimidin-5-yl)(4-fluorophenyl)meth-
anone (3j)
The organozinc solution of 2d in THF (1.1 mmol) was decanted and
carefully transferred from the rest of Zn powder using a syringe to
a dry argon-flushed flask and cooled to –30 °C. A solution of
CuCN·2LiCl (1 M in THF, 0.5 equiv) was added and the mixture
was stirred at –30 °C for 30 min. 4-Fluorobenzoyl chloride (222 mg,
1.3 equiv, 1.4 mmol) was then added at –30 °C. The mixture was
stirred at –30 °C for 1 h and then slowly warmed to 25 °C. The mix-
ture was quenched with sat. aq NH4Cl (10 mL), and the aqueous lay-
er was extracted with EtOAc (4 × 10 mL). The combined organic
extracts were dried (Na2SO4) and concentrated in vacuo. The crude
residue was purified by column chromatography (30% Et2O–pen-
tane) to give 3j (271 mg, 83%) as a white solid; mp 102.2–104.7 °C.
4-(4-Chloro-2,6-dimethoxypyrimidin-5-yl)benzonitrile (3h)
A flame-dried round-bottomed flask was charged with Pd(dba)2 (24
mg, 5 mol%), P(o-furyl)3 (20 mg, 10 mol%), and THF (0.9 mL).
The mixture was stirred at 25 °C for 10 min, and then transferred to
the reaction flask containing an organozinc solution of 2d (0.85
mmol, prepared according to the Procedure 4) and 4-iodobenzoni-
trile (234 mg, 1.2 equiv, 1.02 mmol). The mixture was stirred at
25 °C for 2 h, then quenched with sat. aq NH4Cl (25 mL), and the
aqueous layer was extracted with EtOAc (4 × 25 mL). The com-
bined organic extracts were dried (Na2SO4) and concentrated in
vacuo. The crude residue was purified by column chromatography
(50% Et2O–pentane) to give 3h (208 mg, 89%) yield as a white sol-
id; mp 144.9–146.4 °C.
IR (neat): 1667 (m), 1578 (s), 1536 (s), 1464 (m), 1379 (s), 1268 (s),
1157 (m), 1018 (s), 912 cm–1 (m).
1H NMR (CDCl3, 200 MHz): d = 7.83–7.75 (m, 2 H), 7.13–7.03 (m,
2 H), 4.00 (s, 3 H), 3.87 (s, 3 H).
13C NMR (CDCl3, 75 MHz): d = 189.3, 169.6, 168.4, 165.0, 164.6,
158.4, 133, 132, 116.5, 116.2, 112.7, 56.0, 55.4.
MS (EI, 70 eV): m/z (%) = 296 (M+, 84), 266 (10), 201 (100), 187
(10), 123 (60), 95 (31), 76 (14).
HRMS (EI): m/z calcd for C13H10ClFN2O3 [M+]: 296.0364; found:
296.0345.
IR (neat): 1589 (s), 1535 (m), 1488 (s), 1463 (s), 1394 (s), 1378 (s),
1304 (m), 1244 (m), 1194 (m), 1094 (m), 1019 (s), 993 (m), 938
cm–1 (s).
1H NMR (CDCl3, 300 MHz): d = 7.69–7.61 (m, 2 H), 7.40–7.33 (m,
2 H), 3.98 (s, 3 H), 3.88 (s, 3 H).
13C NMR (CDCl3, 75 MHz): d = 169.5, 163.9, 159.7, 137.1, 132.2
(2 C), 131.6 (2 C), 118.8, 112.9, 112.3, 55.8, 55.4.
MS (EI, 70 eV): m/z (%) = 275 (M+, 100), 260 (12), 245 (32), 240
(17), 210 (16), 182 (12), 175 (12), 140 (16), 114 (8), 102 (6).
(4-Chloro-2,6-dimethoxypyrimidin-5-yl)(2,6-dimethoxyphe-
nyl)methanone (3k)
The organozinc solution of 2d in THF (1.1 mmol) was decanted and
carefully transferred from the rest of Zn powder using a syringe to
a dry argon-flushed flask and cooled to –30 °C. A solution of
CuCN·2LiCl (1 M in THF, 0.5 equiv) was added and the mixture
was stirred at –30 °C for 30 min. 2,6-Dimethoxybenzoyl chloride
(281 mg, 1.3 equiv, 1.4 mmol) was then added at –30 °C. The mix-
ture was stirred at –30 °C for 1 h and then slowly warmed to 25 °C.
The mixture was quenched with sat. aq NH4Cl (10 mL), and the
aqueous layer was extracted with EtOAc (4 × 10 mL). The com-
bined organic extracts were dried (Na2SO4) and concentrated in
HRMS (EI): m/z calcd for C13H10ClN3O2 [M+]: 275.0462; found:
275.0438.
Synthesis 2007, No. 24, 3915–3922 © Thieme Stuttgart · New York