ACS Medicinal Chemistry Letters
Letter
of the BoNT/A LC active site, coupled with the fact that both
groups flanking the stereocenter are aromatic, suggests that
both ring systems may have the capacity to occupy both the
main S1′ pocket and the hydrophobic subpocket.
Amanda E. Wakefield − Department of Biomedical
Engineering and Department of Chemistry, Boston University,
Boston, Massachusetts 02215, United States; orcid.org/
In summary, we have designed, synthesized, and biochemi-
cally evaluated a comprehensive series of chiral benzylamine-
and aniline-based inhibitors of the BoNT/A LC. With the aid
of cocrystal structures and docking, molecules were designed
to take advantage of a π−π stacking interaction to improve
inhibitor potency. Aniline-based hydroxamates possessed
superior potency compared to that of the benzylamine-based
hydroxamates, which was attributed to a more planar
orientation of the π−π stacking interaction, as predicted by
docking. Moreover, the cocrystal structure of 3 has revealed
that displacement of an active-site water molecule by the
hydroxyethyl moiety is crucial to enantiomer selectivity. We
envision that both occupation of the hydrophobic subpocket
by aniline functionalities and the crucial H-bond network
interaction obtained from the hydroxyethyl moiety can be
combined into one entity that will possess not only improved
potency but also greater enantioselectivity; work on such
compounds is currently being conducted.
Karen N. Allen − Department of Chemistry, Boston University,
Boston, Massachusetts 02215, United States; orcid.org/
Complete contact information is available at:
Author Contributions
L.D.T. conceptualized the study; L.D.T., A.L.N., and A.J.C.
carried out chemical synthesis and characterization; L.D.T.,
L.L., and A.J.C. carried out biochemical assays and data
analysis; N.R.S. carried out crystallization studies and refine-
ment; A.L.N. and A.E.W. performed computational modeling
and calculations; J.S.C. carried out and overlooked SFC;
L.D.T. wrote the original draft of the manuscript, and all
authors revised the final version; K.N.A. and K.D.J. acquired
funding and supervised the study.
Notes
The authors declare no competing financial interest.
ASSOCIATED CONTENT
* Supporting Information
The Supporting Information is available free of charge at
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ACKNOWLEDGMENTS
sı
■
The authors thank James Conley for his assistance regarding
crystallography, Dr. Joseph Barbieri for providing truncated
BoNT/A LC, and Emily Sturgell and Brittany Sanchez for their
contribution to SFC. This work was supported by the National
Institutes of Health Grant No. R01 AI153298, the Fulbright
Scholar Program (A.L.N.), the Natural Sciences and Engineer-
ing Research Council of Canada PGSD3-502274 (L.L.), and
the Skaggs Institute for Chemical Biology (L.L. and K.D.J.).
This is Scripps Research manuscript #30105.
Supporting figures, tables, biological materials and
methods, chemistry experimental details, IC50 curves,
compound HPLC chromatograms, and NMR spectra
Accession Codes
X-ray diffraction data, coordinates, and structure factors for the
X-ray crystal structure of 3 bound within the BoNT/A LC is
deposited on the PDB under accession code 7N18.
ABBREVIATIONS
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BoNT/A, botulinum neurotoxin A; CDC, Center for Disease
Control and Prevention; DCHA, 2,4-dichlorocinnamic hy-
droxamic acid; DIPEA, diisopropylethylamine; DMF, dime-
thylformamide; EDC, 1-ethyl-3-(3-(dimethylamino)propyl)-
carbodiimide; FDA, Food and Drug Administration; FRET,
fluorescence resonance energy transfer; HATU, 1-[bis-
(dimethlyamino)methylene]-1H-1,2,3-triazolo[4,5-b]-
pyridinium 3-oxide hexafluorophosphate; HC, heavy chain;
LC, light chain; NSF, N-ethylmaleimide sensitive factor; PDB,
protein data bank; PPTS, pyridinium p-toluenesulfonate; SFC,
supercritical fluid chromatography; SI, Supporting Informa-
tion; SNARE, NSF attachment protein factor; SNAP-25,
synaptosomal-associated protein-25; TFA, trifluoroacetic acid
AUTHOR INFORMATION
Corresponding Author
Kim D. Janda − Department of Chemistry, Scripps Research,
La Jolla, California 92037, United States; orcid.org/
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Authors
Lewis D. Turner − Department of Chemistry, Scripps
Research, La Jolla, California 92037, United States;
Alexander L. Nielsen − Department of Chemistry, Scripps
Research, La Jolla, California 92037, United States;
Lucy Lin − Department of Chemistry, Scripps Research, La
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