Nowak et al.
TBS-2′-deoxy-3-(4-methoxybenzyl)uridine (6a) (4.0 g, 81%) as a
pale yellow oil: FAB-MS m/z 463 ([M + H+] 10%), 307 (100%);
HRMS (C23H35N2O6Si) calcd 463.2264, found 463.2249.
EtOAc) to give crystalline material (1.03 g, 86%) that was
recrystallized (MeOH) to give 12: mp 168-170 °C dec; UV max
259 nm (ꢀ 9900), min 229 nm (ꢀ 2700); 1H NMR (CD3OD) δ 2.44-
2.53 (m, 2H), 2.78 (dd, J ) 7.8, 13.7 Hz, 1H), 3.89 (d, J ) 13.2
Hz, 1H), 4.06 (dd, J ) 3.4, 13.2 Hz, 1H), 5.72 (d, J ) 8.3 Hz,
1H), 6.10-6.16 (m, 1H), 7.81 (d, J ) 8.3 Hz, 1H); 19F NMR (CD3-
OD) δ 135.7 (dd, J ) 15.0, 164.5 Hz, 1F), 151.0 (d, J ) 164.5 Hz,
1F); 13C NMR (CD3OD) δ 28.9 (t, J ) 12.2 Hz), 32.7, 58.5, 74.4
(t, J ) 11.1 Hz), 90.9 (dd, J ) 3.3, 7.9 Hz), 103.4, 114.8 (dd, J )
295.3, 303.7 Hz), 142.9, 152.0, 166.2; MS m/z 260 ([M+] 3%),
229, 202, 158, 138 (100%); HRMS (C10H10F2N2O4) calcd 260.0608,
found 260.0602. Anal. Calcd for C10H10F2N2O4: C, 46.16; H, 3.87;
N 10.77. Found: C, 46.23; H, 4.11; N 11.06.
Ph3P (9.1 g, 34.6 mmol), imidazole (4.7 g, 69.3 mmol), and
iodine (8.8 g, 34.6 mmol) were added to a stirred solution of 6a
(8.0 g, 17.3 mmol) in toluene (200 mL) under N2. Stirring was
continued, and the mixture was heated at 70 °C for 2 h and then
cooled to ambient temperature. The clear supernatant was decanted,
concentrated, and chromatographed (EtOAc/hexanes, 1:4) to give
the threo/erythro epimers 7a/7b (2.4:1; 8.1 g, 81%). See the
Supporting Information for separation and characterization of the
deprotected epimers.
1-[5-O-Benzoyl-2,3-dideoxy-3,4-C-(difluoromethylene)-â-D-
erythro-pentofuranosyl]-3-(4-methoxybenzyl)uracil (10). (A) A
solution of 7a/7b (8.0 g, 13.9 mmol) and DABCO (6.0 g, 53.6
mmol) in benzene (200 mL) was stirred at reflux for 6 h,
concentrated, and deposited on silica gel. Chromatography (EtOAc/
hexanes, 1:20 f 1:3) gave unreacted 7b (2.2 g, 28%) plus a 1:2
mixture of 1-(5-O-TBS-2,3-dideoxy-â-D-glycero-pent-2-enofura-
nosyl)-3-(4-methoxybenzyl)uracil (8a) and (R)-2-[(tert-butyldi-
methylsilyloxy)methyl]-5-[3-(4-methoxybenzyl)uracil-1-yl]-4,5-di-
hydrofuran (8b) (total: 4.4 g, 71%). (B) Powdered NaI (3.0 g, 20.0
mmol) was stirred and heated (170 °C, oil bath) under vacuum for
1 h in a flask (250 mL) equipped with a Teflon valve. The bath
was allowed to cool to ambient temperature, and a mixture of 8a/
8b (1.47 g, 3.3 mmol) and then (CF3)2Hg13,14 (1.7 g, 5.0 mmol) in
dried THF (10 mL) was injected through a septum (under N2). The
reaction mixture was heated at 60 °C for 1 h, and volatiles were
evaporated. Column chromatography (EtOAc/hexanes, 1:4 f 1:1)
gave a mixture of unreacted 8a plus 5′-O-TBS-2′,3′-dideoxy-3′,4′-
C-(difluoromethylene)-â-D-erythro-pentofuranosyl]-3-(4-methoxy-
benzyl)uracil. A solution of the mixture (1.40 g) and NH4F (0.4 g,
10.8 mmol) in MeOH (25 mL) was refluxed overnight. Volatiles
were evaporated, and the residue was chromatographed (EtOAc/
hexanes, 1:4 f 2:1) to give 1-[2,3-dideoxy-3,4-C-(difluorometh-
ylene)-â-D-erythro-pentofuranosyl]-3-(4-methoxybenzyl)uracil (9)
(470 mg, 65%). (C) Et3N (0.5 mL, 0.4 g, 3.9 mmol) and BzCl (0.3
mL, 0.4 g, 2.6 mmol) were added to a stirred solution of 9 (470
mg, 1.2 mmol) in CH2Cl2 (5 mL), and stirring was continued for
1 h. Volatiles were evaporated, and the residue was chromato-
graphed (EtOAc/hexanes, 1:6 f EtOAc) to give 1-[5-O-benzoyl-
2,3-dideoxy-3,4-C-(difluoromethylene)-â-D-erythro-pentofuranosyl]-
3-(4-methoxybenzyl)uracil (10) (590 mg, 99%): UV max 227, 260
nm (ꢀ 25 500, 10 000), min 212, 248 nm (ꢀ 17 700, 8700); 1H NMR
(CDCl3) δ 2.30-2.36 (m, 1H), 2.50 (dd, J ) 7.3, 14.2 Hz, 1H),
2.85 (dd, J ) 7.8, 11.2 Hz, 1H), 3.76 (s, 3H), 4.80-4.87 (m, 2H),
4.95 (d, J ) 13.7 Hz, 1H), 4.98 (d, J ) 13.7 Hz, 1H), 5.56 (d, J )
8.3 Hz, 1H), 6.12-6.15 (m, 1H), 6.81 (d, J ) 8.3 Hz, 2H), 7.29
(d, J ) 8.3 Hz, 1H), 7.40 (d, J ) 8.8 Hz, 2H), 7.47 (t, J ) 7.6 Hz,
2H), 7.61 (t, J ) 7.3 Hz, 1H), 8.04 (d, J ) 8.3 Hz, 2H); 19F NMR
(CDCl3) δ 135.7 (dd, J ) 15.0, 166.6 Hz, 1F), 155.0 (d, J ) 166.6
Hz, 1F); 13C NMR (CDCl3) δ 28.0 (t, J ) 12.2 Hz), 32.1, 43.5,
55.1, 59.8, 70.3 (t, J ) 11.4 Hz), 89.7 (d, J ) 4.1 Hz), 102.8,
111.9 (dd, J ) 296.8, 305.2 Hz), 113.6, 128.6, 128.7, 129.1, 129.6,
130.7, 133.7, 137.2, 150.3, 159.1, 162.1, 165.9; FAB-MS m/z 507
([M + Na+] 100%), 485 (100%); HRMS (C25H22F2N2O6Na) calcd
507.1344, found 507.1333.
1-[2,3-Dideoxy-3,4-C-(difluoromethylene)-â-D-erythro-pento-
furanosyl]cytosine Hydrobromide (13‚HBr). Et3N (7.28 mL, 3.86
g, 38.2 mmol) was added dropwise to a stirred, cooled (∼0 °C)
mixture of POCl3 (1.11 mL, 1.77 g, 11.54 mmol), 1,2,4-triazole
(3.80 g, 55.1 mmol), and MeCN (32.8 mL). A solution of 11 (1.92
g, 5.25 mmol) in MeCN (20.5 mL) was added, and stirring was
continued at ambient temperature for 2 h. Et3N (5.08 mL, 3.70 g,
36.6 mmol) and H2O (2.05 mL) were added, and stirring was
continued for 10 min. Volatiles were evaporated, and the residue
was partitioned [ice-cold, saturated NaHCO3/H2O (60 mL)//CH2-
Cl2 (60 mL)]. The aqueous phase was extracted (CH2Cl2, 60 mL),
and the combined organic phase was washed (brine, 100 mL) and
dried (MgSO4). Evaporation of volatiles gave 1-[5-O-benzoyl-2,3-
dideoxy-3,4-C-(difluoromethylene)-â-D-erythro-pentofuranosyl]-4-
(1,2,4-triazol-1-yl)pyrimidin-2-one (2.04 g, 93%) as colorless
crystals, which were dissolved in 1,4-dioxane (30 mL) and stirred
with a solution of NH3/H2O (30%, 10 mL) at ambient temperature
for 12 h. Volatiles were evaporated and the residue was dissolved
and filtered through silica gel (EtOAc/MeOH, 2:1). Volatiles were
evaporated, and the residue was stirred in NH3/MeOH (14%, 10
mL) at 80 °C for 90 min. Volatiles were evaporated and the residue
was dissolved in H2O and applied to a column of Dowex 1 × 2
(OH-) resin (in H2O). Elution (H2O) and evaporation of volatiles
from UV-active fractions gave 1-[2,3-dideoxy-3,4-C-(difluoro-
methylene)-â-D-erythro-pentofuranosyl]cytosine (13) (520 mg,
60%) as a pale-yellow oil that was dissolved in MeOH (10 mL)
and 48% HBr/H2O (1 mL) was added. Volatiles were evaporated,
and the residue was recrystallized (MeOH) to give 13‚HBr as
colorless crystals: mp 170-174 °C dec; UV max 280 nm (ꢀ
1
11 400), min 245 nm (ꢀ 3000); H NMR (CD3OD) δ 2.51-2.64
(m, 2H), 2.86 (dd, J ) 7.8, 13.7 Hz, 1H), 3.91 (d, J ) 13.2 Hz,
1H), 4.10 (dd, J ) 3.4, 13.2 Hz, 1H), 6.09-6.13 (m, 1H), 6.15 (d,
J ) 7.8 Hz, 1H), 8.26 (d, J ) 7.8 Hz, 1H); 19F NMR (CD3OD) δ
136.1 (dd, J ) 15.0, 164.5 Hz, 1F), 152.0 (d, J ) 164.5 Hz, 1F);
13C NMR (CD3OD) δ 28.9 (t, J ) 12.2 Hz), 33.3, 58.3, 75.3 (t, J
) 11.2 Hz), 92.3 (br s), 95.2, 114.5 (dd, J ) 294.5, 302.9 Hz),
147.0, 148.3, 161.5; FAB-MS m/z 282 ([M + Na+] 90%), 239,
237 (100%); HRMS (C10H11F2N3O3Na) calcd 282.0666, found
282.0678.
9-[3,5-Bis-O-TBS-2-O-(thiomethoxythiocarbonyl)-â-D-ribo-
furanosyl]-6-(2,5-dimethylpyrrol-1-yl)purine (15). NaH (1.42 g,
59.3 mmol) and then CS2 (3.0 mL, 3.8 g, 50.4 mmol) were added
to a cold (ice/water bath) stirred solution of 14a/14b22 (17.0 g, 29.7
mmol) in DMF (100 mL). Stirring was continued for 1.5 h at ∼0
°C, MeI (5.5 mL, 12.6 g, 89.0 mmol) was added, and stirring was
continued for 0.5 h. Volatiles were evaporated in vacuo (<50 °C),
the residue was partitioned (EtOAc/H2O), the aqueous phase was
extracted (EtOAc, 3 × 100 mL), and the combined organic phase
was dried (MgSO4). Volatiles were evaporated, and the residue was
chromatographed (EtOAc/hexanes, 1:20 f 1:4) to give xanthate
15 (17.0 g, 86%). Recrystallizations of a sample (toluene/hexanes)
gave colorless needles: mp 158-160 °C; UV max 283 nm (ꢀ
1-[2,3-Dideoxy-3,4-C-(difluoromethylene)-â-D-erythro-pento-
furanosyl]uracil (12). (A) CAN (8.5 g, 15.5 mmol) in H2O (18
mL) was added to a solution of 10 (1.9 g, 3.9 mmol) in CH3CN
(180 mL), the mixture was heated at 70 °C for 1.5 h, and H2O was
added. The diluted reaction mixture was extracted with EtOAc (5
× 50 mL), and the combined organic phase was concentrated and
deposited on silica gel. Chromatography (EtOAc/hexanes, 1:4 f
2:1) gave 1-[5-O-benzoyl-2,3-dideoxy-3,4-C-(difluoromethylene)-
â-D-erythro-pentofuranosyl]uracil (11) (1.17 g, 82%). (B) A solution
of 11 (1.68 g, 4.6 mmol) in NH3/MeOH (14%, 20 mL) in a sealed
flask was heated at 60 °C overnight. Volatiles were evaporated,
and the residue was chromatographed (EtOAc/hexanes, 1:3 f
1
20 200), min 248 nm (ꢀ 4700); H NMR (CDCl3) δ 0.06 (s, 3H),
0.10 (s, 3H), 0.12 (s, 3H), 0.13 (s, 3H), 0.89 (s, 9H), 0.95 (s, 9H),
2.21 (s, 6H), 2.56 (s, 3H), 3.82 (dd, J ) 2.4, 11.7 Hz, 1H), 3.97
(dd, J ) 2.9, 11.7 Hz, 1H), 4.23-4.25 (m, 1H), 4.96 (dd, J ) 2.9,
536 J. Org. Chem., Vol. 72, No. 2, 2007