4066 Journal of Medicinal Chemistry, 2009, Vol. 52, No. 13
Brief Articles
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resistance and extensive multidrug resistance to the existing
therapeutics.
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S.; Murphy, L.; Oliver, K.; Osborne, J.; Quail, M. A.; Rajandream,
M. A.; Rogers, J.; Rutter, S.; Seeger, K.; Skelton, J.; Squares, R.;
Squares, S.; Sulston, J. E.; Taylor, K.; Whitehead, S.; Barrell, B. G.
Deciphering the biology of Mycobacterium tuberculosis from the
complete genome sequence. Nature 1998, 393, 537–544.
(5) Supuran, C. T. Carbonic anhydrases: novel therapeutic applications for
inhibitors and activators. Nat. ReV. Drug DiscoVery 2008, 7, 168–181.
(6) Dye, C. Doomsday postponed? Preventing and reversing epidemics
of drug-resistant tuberculosis. Nat. ReV. Microbiol. 2009, 7, 81–87.
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Crit. Care Med. 2008, 29, 552–559.
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and its translation to small molecule agents in clinical development
for tuberculosis treatment. Tuberculosis 2008, 88 (Suppl 1), S3–S17.
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Experimental Section
Materials and Methods. Sulfonamides 1 used in the synthesis
were reported earlier.11 2,4,6-Trimethylpyrylium perchlorate 2 and
standard sulfonamides were commercially available compounds
(from Sigma-Aldrich, Milan, Italy). The CA isozymes used in the
experiments were recombinant ones obtained and purified as
reported earlier by this group.1,2 1H, DEPT, NOESY, COSY,
HMQC, and HMBC spectra were recorded using a Bruker Advance
III 300 MHz spectrometer. The chemical shifts are reported in parts
per million (ppm). Melting points (mp) were measured in open
capillary tubes using a Bu¨chi melting point B-540 melting point
apparatus and are uncorrected. Thin layer chromatography (TLC)
was carried out on Merck silica gel 60 F254 aluminum backed plates.
Elution of the plates was carried out using MeOH/DCM or MeOH/
CHCl3 systems. Visualization was achieved with UV light at 254
nm. Elemental analysis was done in house by combustion. Electron
ionization mass spectra (30 eV) were recorded in positive or
negative mode on a Water MicroMass ZQ. The purity has been
determined by means of analytical HPLC, performed on a reversed-
phase C18 Bondapack column, with a Beckman EM-1760 instru-
ment. Both conbustion and HPLC confirmed a purity of >99.5%
for the new compounds reported here.
(10) Betts, J. C.; Lukey, P. T.; Robb, L. C.; McAdam, R. A.; Duncan, K.
Evaluation of a nutrient starvation model of Mycobacterium tuber-
culosis persistence by gene and protein expression profiling. Mol.
Microbiol. 2002, 43, 717–31.
General Procedure for the Preparation of Compounds
3-17. 2,4,6-Trimethylpyrylium perchlorate 2 (1.5 mM) was dis-
solved in 20 mL of methanol. After addition of 2-(hydrazinocar-
bonyl)-3-substituted-phenyl-1H-indole-5-sulfonamide derivatives 1
(3 mM), the solution was refluxed overnight. The cold mixture was
treated with 200 mL of 6% perchloric acid to precipitate the
pyridinium salts. The obtained products were recrystallized from
water with 6% perchloric acid.
¨
(11) (a) Gu¨zel, O.; Temperini, C.; Innocenti, A.; Scozzafava, A.; Salman,
A.; Supuran, C. T. Carbonic anhydrase inhibitors. Interaction of
2-(hydrazinocarbonyl)-3-phenyl-1H-indole-5-sulfonamide with twelve
mammalian isoforms: kinetic and X-Ray crystallographic studies.
¨
Bioorg. Med. Chem. Lett. 2008, 18, 152–158. (b) Gu¨zel, O.; Innocenti,
A.; Scozzafava, A.; Salman, A.; Parkkila, S.; Hilvo, M.; Supuran, C. T.
Carbonic anhydrase inhibitors. Synthesis and inhibition studies against
mammalian isoforms I - XV with a series of 2-(hydrazinocarbonyl)-
3-substituted-phenyl-1H-indole-5-sulfonamides. Bioorg. Med. Chem.
2008, 16, 9113–9120.
1-(([5-(Aminosulfonyl)-3-phenyl-1H-indol-2-yl]carbonyl)amino)-
2,4,6-trimethylpyridinium Perchlorate 3. Yield 79%; mp > 300
(12) Supuran, C. T.; Scozzafava, A.; Casini, A. Carbonic anhydrase
inhibitors. Med. Res. ReV. 2003, 23, 146–189.
1
°C (dec). H NMR (DMSO-d6, 300 MHz) δ (ppm): 2.61 (9H, s,
(13) (a) Balaban, A. T.; Dinculescu, A.; Dorofeenko, G. N.; Fischer, G. W.;
Koblik, A. V.; Mezheritskii, V. V.; Schroth, W. Pyrylium Salts:
Syntheses, Reactions and Physical Properties; Academic Press: New
York, 1982, pp 8-360; (b) Schroth, W.; Balaban, A. T. Hetarene (Teil
2). In Methoden der Organischen Chemie (Houben-Weyl), Vol. E7b;
Kreher, R. P., Ed.; G. Thieme Verlag: Stuttgart, 1992, pp 755-963;
(c) Balaban, T. S.; Balaban, A. T. Pyrylium Salts. In Science of
Synthesis: Houben-Weyl Methods of Molecular Transformations,
Georg Thieme Verlag: Stuttgart, 2003; Vol. 14, pp 11-200.
(14) (a) Dinculescu, A.; Balaban, A. T. Reaction of pyrylium salts with
nucleophiles. XIV. New pyridinium salts with potential biological
activity. ReV. Roum. Chim. 1980, 25, 1505–1528. (b) Toma, C.;
Balaban, A. T. Reaction of pyrylium salts with nucleophiles. VI.
Reaction with amino acids. Tetrahedron 1966, (Suppl. 7), 27–34. (c)
Supuran, C. T.; Manole, G.; Dinculescu, A.; Schiketanz, A.; Gheo-
rghiu, M. D.; Puscas, I.; Balaban, A. T. Carbonic anhydrase inhibitors.
Part 5. Pyrylium salts in the synthesis of isozyme-specific inhibitors.
J. Pharm. Sci. 1992, 81, 716–719. (d) Supuran, C. T.; Scozzafava,
A.; Ilies, M. A.; Iorga, B.; Cristea, T.; Briganti, F.; Chiraleu, F.; Banciu,
M. D. Carbonic anhydrase inhibitors. Part 53. Synthesis of substituted-
pyridinium derivatives of aromatic sulfonamides: The first nonpoly-
meric membrane-impermeable inhibitors with selectivity for isozyme
IV. Eur. J. Med. Chem. 1998, 33, 577–595.
pyridinium 2,4,6-(CH3)3), 7.24 (2H, s, SO2NH2), 7.42-7.68 (6H,
m, Ar-H), 7.70-7.84 (2H, m, Ar-H), 7.90 (2H, s, Ar-H), 8.05
(1H, s, CONH), 12.50 (1H, s, indole NH). LC/MS: m/z 436
(M + H)+. Elem anal. (C, H, N, S).
All other compounds (4-17) have been characterized as 3 (see
Supporting Information for details).
CA Catalytic Activity and Inhibition. An Applied Photophysics
stopped-flow instrument has been used for assaying the CA
catalyzed CO2 hydration activity20 as reported earlier.1,2
Acknowledgment. This research was financed in part by a
grant of the 6th Framework Programme of the European Union
¨
(DeZnIT project). O.G. is grateful to TUBITAK (Ankara,
Turkey) for the providing financing under contract no. 2219/
2008.
Supporting Information Available: The complete characteriza-
tion of compunds 3-17 is described in detail. This material is
(15) (a) Supuran, C. T.; Scozzafava, A.; Ilies, M. A.; Briganti, F. Carbonic
anhydrase inhibitors. Synthesis of sulfonamides incorporating 2,4,6-
trisubstituted-pyridinium-ethylcarboxamido moieties possessing mem-
brane impermeability and in vivo selectivity for the membrane-bound
(CA IV) versus the cytosolic (CA I and CA II) isozymes. J. Enzym.
Inhib. 2000, 15, 381–401. (b) Scozzafava, A.; Briganti, F.; Ilies, M. A.;
Supuran, C. T. Carbonic anhydrase inhibitors. Synthesis of membrane-
impermeant low molecular weight sulfonamides possessing in vivo
selectivity for the membrane-bound versus the cytosolic isozymes.
J. Med. Chem. 2000, 43, 292–300. (c) Casey, J. R.; Morgan, P. E.;
Vullo, D.; Scozzafava, A.; Mastrolorenzo, A.; Supuran, C. T. Carbonic
anhydrase inhibitors. Design of selective, membrane-impermeant
inhibitors targeting the human tumor-associated isozyme IX. J. Med.
Chem. 2004, 47, 2337–2347.
References
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