P. Ramadevi et al. / Journal of Photochemistry and Photobiology A: Chemistry 305 (2015) 1–10
5
3.1.3. FTIR spectroscopy
other hand intercalation generally results in hypochromism and a
red shift (bathochromism) of the absorption band due to a strong
stacking interaction between an aromatic moiety of the ligand and
the base pairs of the DNA [33]. The UV spectra of ligands L1–L4
(10ꢀ9 M), complexes C1–C4 (10ꢀ9 M) and C5–C8 (10ꢀ6 M) have
been recorded in absence and presence of varying CT-DNA
concentration (1–50 ꢄ10ꢀ6 M) within. The absorption bands of
the ligands L1–L4 (Fig. S4) and complexes C1–C4 (Fig. 2a) centered
at 207–208 nm showed significant hypochromism and a slight red
shift, speculative of primarily groove binding nature of the
compounds whereas the absorption bands of complexes C5–C8
(Fig. 2b) centered at 264–266 nm also exhibited hypochromism
but with negligible red shift. DNA intercalators show a much larger
bathochromic shift and hypochromism of the spectral bands,
although the intercalative mode of binding of the complexes with
DNA cannot be ruled out completely [25].
The FTIR spectra of the complexes C1–C8 displayed character-
istic strong stretching bands at 1520–1580 cmꢀ1 and weaker bands
at 1490–1514 cmꢀ1 due to asymmetric and symmetric carboxylate
(COOꢀ) stretch respectively which were found as strong bands in
the fingerprint region at 1580–1610 cmꢀ1 in the spectra of free
ligands L1–L4. Moreover the distinct broad band at ꢅ3450 cmꢀ1
owing to the O—H stretching of free carboxylic acid group found in
the ligand is completely lost in the IR spectra of the complex
indicating complexation of the ligand with metal via the
carboxylate oxygen. Furthermore the medium secondary amine
N—H stretching bands found in the spectra of the free ligands L1–
L4 in the region of 2900–3000 cmꢀ1 was found to have a positive
shift in the region of 3080–3200 cmꢀ1 in C1–C8 indicating
complexation of the ligand with metal via the nitrogen of
secondary amine (mannich base). The presence of perchlorate as
the counter ion in the complexes C5–C8 is indicated by its nCl—O
stretching band in the range of 625–635 cmꢀ1 [30]. All the
important stretching values have been tabulated in Table S2.
The magnitude of binding strength to CT-DNA may be
determined through the calculation of binding constant Kb which
is obtained by monitoring the changes in the absorbance of the
compounds with increasing concentrations of CT-DNA. Kb is given
3.1.4. Electronic spectra
by the ratio of slope to the y intercept in plots [DNA]/(eA
–
ef) versus
The electronic absorption spectra of the ligands L1–L4 and
complexes C1–C8 in DMSO solution were recorded in the region
200–900 nm. The electronic spectra of free ligands displayed
[DNA] (Fig. 2, insets) according to Eq. (1) [34]
½DNAꢆ
½DNAꢆ
1
¼
þ
(1)
ð
eA
ꢀ
ef
Þ
ð
eb
ꢀ
ef
Þ
Kbðeb
ꢀ ef Þ
intense absorption bands at 207–209 nm ascribed to
p–p* intra
where [DNA] is the concentration of DNA in base pairs,
e
A = Aobsd/
ligand transition of the cyclopentadienyl rings of ferrocene (Fig. S3,
a) which were observed unchanged in the spectra of the complexes
C1–C4 (Fig. S3,b). The intra ligand transition bands of complexes
C5–C8 were observed at longer wavelength region at 278–282 nm
(Fig. S3,d) due to coordination with Ru(II). In addition all the
complexes showed peaks in the region 382–488 nm corresponding
[compound], ef is the extinction coefficient for the unbound
compound (L1–C8) and eb is the extinction coefficient for the
compound in the fully bound form. The binding constant Kb values
(Table 1) for the ligands are in the range of 6.7 ꢄ104–1.3 ꢄ104 Mꢀ1
indicative of strong binding of the ligands with ligand L1 showing
the highest binding constant. The Kb values of metal complexes
showed 10–100 folds higher binding efficacy compared to the
ligands. In general, complexes C5–C8 with two 1,10 phenanthroline
moieties bound to the metal center, exhibit stronger binding
to dp–p* MLCT transitions (Fig. S3,c and d). Furthermore,
complexes C5–C8 showed Ru(II) centered distinct d–d bands in
the visible region 680–700 nm (Fig. S3,d). The absorption peak
values have been tabulated in Table S3.
interactions (105–106 Mꢀ1) than complexes C1–C4 (104–105 Mꢀ1
)
due to (i) intercalation facilitated by the presence of phenanthro-
line ligands by insertion of the complex into the adjacent base pairs
of DNA and (ii) groove binding of the ferrocenyl moiety. Complex
C5 with a tyrosine substituted ferrocenyl moiety bound to the Ru
(II) center shows the highest binding constant value due to
additional hydrogen bonding interactions between —OH group of
tyrosine and DNA nucleobases which are accessible both in major
groove and minor groove and is also observed in the case of the free
ligand L1. Complex C8 with a tryptophan substituted ferrocenyl
moiety bound to Ru(II) center shows a similar binding constant
value as C5 which also may be due to additional hydrogen bonding
interaction between —NH group of tryptophan and DNA nucle-
obases. The titration curves for ligands L1–L4, complexes C2–C4
3.2. DNA binding studies
3.2.1. Electronic absorption titration
The presence of ground state interactions between the
biological macromolecule DNA and compounds under study have
been detected using absorption spectroscopy. DNA can provide
three distinctive binding sites (groove binding outside of DNA
helix, along major or minor groove, electrostatic binding to
phosphate group and intercalation), a behavior important for the
biological role of antibiotic and anticancer drugs in vivo [31]. The
binding efficiency of metal complex to DNA can be effectively
investigated employing electronic spectroscopy since the observed
changes in the spectra may give evidence of the existing
interaction mode [32]. Any interaction between the compounds
(LI–L4 and C1–C8) and DNA is expected to perturb the ligand
centered transitions of the compounds. Binding with DNA via non-
intercalative binding modes, such as electrostatic forces, van der
Waals interactions, dative bonds, hydrogen bonds and hydropho-
bic interactions generally results in increase in absorption intensity
(hyperchromism) upon increasing the concentration of CT-DNA
owing to the degradation of the DNA double helix structure. On the
and C6–C8, as well as Plot of [DNA]/(eA–ef) versus [DNA] for L1–L4
have been provided as Supplementary material in Fig. S4.
3.2.2. Competitive binding studies with ethidium bromide using
fluorescence spectroscopy
To further examine the mode of binding of the compounds with
DNA, via intercalation or groove binding, a competitive binding
study with two dyes: EB and DAPI have been carried out using
steady state fluorescence spectroscopy. Ethidium bromide (=3,8-
diamino-5-ethyl-6-phenyl-phenanthridinium bromide) is a phe-
Table 2
nanthridine fluorescence dye and is
a typical indicator of
KSV values of ruthenium complexes C5-C8.
intercalation, forming soluble complexes with nucleic acids and
emitting intense fluorescence in the presence of CT DNA due to the
intercalation of the planar phenanthridinium ring between
adjacent base pairs on the double helix [35,36]. Addition of a
second molecule, which may bind to DNA more strongly than EB
results in a decrease of the DNA-induced EB emission [37]. The
Compound
KSV (Mꢀ1
)
C5
C6
C7
C8
8.3 ꢄ103
7.3 ꢄ103
6.5 ꢄ103
1.2 ꢄ104