Article
Journal of Medicinal Chemistry, 2010, Vol. 53, No. 1 343
The inhibition constants were obtained by nonlinear least-
squares methods using PRISM 3, as reported earlier,1,6,7 and
represent the mean from at least three different determinations.
Crystallization, X-Ray Data Collection, and Refinement.
Crystals of the hCA II-4b complex were obtained by using
the hanging-drop method for cocrystallizing the protein with the
ligand, as previously described.1 A monochromatic experiment
at the CuR wavelength was performed on a crystal of hCA II
grown in the presence of 2 (10 μM) by the rotation method on a
inhibitors: X-ray and molecular modeling study for the interaction of
a fluorescent antitumor sulfonamide with isozyme II and IX. J. Am.
Chem. Soc. 2006, 128, 8329–8335. (c) Nishimori, I.; Onishi, S.;
Takeuchi, H.; Supuran, C. T. The R- and β-classes carbonic anhydrases
from Helicobacter pylori as novel drug targets. Curr. Pharm. Des.
2008, 14, 622–630.
(7) Ebbesen, P.; Pettersen, E. O.; Gorr, T. A.; Jobst, G.; Williams, K.;
Kienninger, J.; Wenger, R. H.; Pastorekova, S.; Dubois, L.; Lambin,
P.; Wouters, B. G.; Supuran, C. T.; Poellinger, L.; Ratcliffe, P.;
€
Kanopka, A.; Gorlach, A.; Gasmann, M.; Harris, A. L.; Maxwell,
P.; Scozzafava, A. Taking advantage of tumor cell adaptations to
hypoxia for developingnew tumor markers and treatment strategies.
J. Enzyme Inhib. Med. Chem. 2009, 24 (S1), 1–39.
PX-Ultra sealed-tube diffractometer (Oxford Diffraction) at
100 K. The crystal diffracted up to 2.0
˚
A resolution
˚
(resolution: 20.0-2.0 A), with 16696 unique reflections out of
27978 reflections, and belonged to the space group P21 (a =
(8) Schlicker, C.; Hall, R. A.; Vullo, D.; Middelhaufe, S.; Gertz, M.;
Supuran, C. T.; Muhlschlegel, F. A.; Steegborn, C. Structure and
inhibition of the CO2-sensing carbonic anhydrase Can2 from the
pathogenic fungus Cryptococcus neoformans. J. Mol. Biol. 2009,
385, 1207–1220.
˚
˚
˚
42.2 A, b = 41.5 A, c = 72.4 A and R = γ = 90°, β = 104.5°).
Data were processed with CrysAlis RED (Oxford Diffraction
2006).25 The structure was analyzed by difference Fourier
technique, using the PDB file 1CA2 as starting model. The
refinement was carried out with the program REFMAC5,26 and
model building and map inspections were performing using the
COOT program.27 The final model of the complex hCA II-4b
adduct had an R factor of 22.0% and R-free 29.0% in the
ꢁ
(9) (a) Thiry, A.; Dogne, J. M.; Masereel, B.; Supuran, C. T. Targeting
tumor-associated carbonic anhydrase IX in cancer therapy. Trends
Pharmacol. Sci. 2006, 27, 566–573. (b) Svastova, E.; Hulíkova, A.;
Rafajova, M.; Zatovicova, M.; Gibadulinova, A.; Casini, A.; Cecchi,
A.; Scozzafava, A.; Supuran, C. T.; Pastorek, J.; Pastorekova, S.
Hypoxia activates the capacity of tumor-associated carbonic anhydrase
IX to acidify extracellular pH. FEBS Lett. 2004, 577, 439–445.
(10) (a) Supuran, C. T. Diuretics: From classical carbonic anhydrase
inhibitors to novel applications of the sulfonamides. Curr. Pharm.
Des. 2008, 14, 641–648. (b) Supuran, C. T.; Di Fiore, A.; De Simone, G.
Carbonic anhydrase inhibitors as emerging drugs for the treatment of
obesity. Expert Opin. Emerging Drugs. 2008, 13, 383–392. (d) De
Simone, G.; Di Fiore, A.; Supuran, C. T. Are carbonic anhydrase
inhibitors suitable for obtaining antiobesity drugs? Curr. Pharm.
Des. 2008, 14, 655–660.
(11) (a) Minakuchi, T.; Nishimori, I.; Vullo, D.; Scozzafava, A.;
Supuran, C. T. Molecular cloning, characterization and inhibition
studies of the Rv1284 β-carbonic anhydrase from Mycobacterium
tuberculosis with sulfonamides and a sulfamate. J. Med. Chem.
2009, 52, 2226–2232. (b) Nishimori, I.; Minakuchi, T.; Vullo, D.;
Scozzafava, A.; Innocenti, A.; Supuran, C. T. Carbonic anhydrase
inhibitors. Cloning, characterization and inhibition studies of a new
β-carbonic anhydrase from Mycobacterium tuberculosis. J. Med.
Chem. 2009, 52, 3116–3120.
˚
resolution range 20.0-2.0 A, with a rms deviation from stan-
˚
dard geometry of 0.012 A in bond lengths and 1.53° in angles.
The correctness of stereochemistry was finally checked using
PROCHECK.28 Crystallographic parameters and refinement
statistics are shown in Table 2.
Acknowledgment. This research was financed in part by a
grantofthe 6thFrameworkProgramme (FP) of the European
Union (DeZnIT project) and by a grant of the 7th FP of EU
(Metoxia project).
Supporting Information Available: The synthesis and char-
acterization of compounds 6-10 are described in detail. This
material is available free of charge via the Internet at http://
pubs.acs.org.
(12) Sethna, S. M.; Shah, N. M. The chemistry of coumarins. Chem.
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