H.-Y. Lee et al. / European Journal of Medicinal Chemistry 125 (2017) 1268e1278
1277
J ¼ 15.9 Hz, 2H), 3.86 (s, 6H), 3.80 (s, 3H). HRMS (ESI) for
27H24N2O8S (Mþ) calcd 536.1253, found 536.1332. HPLC purity of
100.0% (retention time ¼ 33.24).
5 h. The reaction mixture was cooled to ambient temperature and
filtered through a pad of Celite. The filtrate was concentrated under
reduced pressure and the resulting brown residue was purified by
flash column chromatography (n-hexane: EtOAc ¼ 2: 1) to afford
C
4.1.7. N-Hydroxy-4-[3-(3,4,5-trimethoxy-benzoyl)-indol-1-
ylmethyl]-benzamide (16)
compound 22 as a yellow oil. 1H NMR (500 MHz, CDCl3)
d 8.11 (d,
J ¼ 9.0 Hz, 1H), 8.02 (s, 1H), 7.93 (s, 1H), 7.86 (d, J ¼ 8.0 Hz, 1H),
7.60e7.72 (m, 2H), 7.45e7.53 (m, 2H), 7.37 (d, J ¼ 7.0 Hz, 1H), 7.13 (s,
2H), 7.02 (dd, J ¼ 2.5, 9.0 Hz, 1H), 6.38 (d, J ¼ 16.0 Hz, 1H), 3.97 (s,
3H), 3.92 (m, 9H), 1.33 (s, 9H).
This compound was obtained in 48% overall yield from com-
pound 29 in a manner similar to that described for the preparation
of 10 from 19: 1H NMR (500 MHz, acetone-d6)
d 10.35 (s, 1H),
8.37e8.41 (m, 1H), 8.18 (s, 1H), 7.51e7.58 (m, 4H), 7.37 (d, J ¼ 7.5 Hz,
2H), 7.27e7.30 (m, 2H), 7.14 (s, 2H), 6.53 (d, J ¼ 16.0 Hz, 1H), 5.63 (s,
2H), 3.88 (s, 6H), 3.80 (s, 3H). HRMS (ESI) for C28H27N2O6 (MþHþ)
calcd 487.1869, found: 487.1858. HPLC purity of 98.23% (retention
time ¼ 30.04).
4.1.13. 4-[6-Methoxy-3-(3,4,5-trimethoxy-benzoyl)-indol-1-
ylmethyl]-benzoic acid methyl ester (26)
NaH (0.15 g, 3.8 mmol) was added to a solution of compound 9
(0.9 g, 2.6 mmol) in DMF (5 mL) and the mixture was stirred for
20 min. Methyl (4-chloromethyl)benzoate (0.52 g, 2.8 mmol) was
added to the resulting mixture which was then stirred for 16 h. The
reaction was quenched with H2O (50 mL) and extracted with EtOAc
(50 mL ꢁ 3). The organic layers were collected and dried in vacuum
to afford compound 26 (1.19 g, 94%) as an oily product. 1H NMR
4.1.8. N-Hydroxy-4-((6-methoxy-3-(4-methoxybenzoyl)-1H-indol-
1-yl)methyl)benzamide (17)
This compound was obtained in 65% overall yield from com-
pound 25 in a manner similar to that described for the preparation
of 12 from 9: mp 120e121 ꢀC; 1H NMR (300 MHz, acetone-d6)
d
8.26
(500 MHz, CDCl3)
d
7.94 (d, J ¼ 8.5 Hz, 2H), 7.60 (d, J ¼ 9.0 Hz, 1H),
(d, J ¼ 8.4 Hz, 1H), 7.99 (s, 1H), 7.87e7.92 (m, 2H), 7.81 (d, J ¼ 8.4 Hz,
2H), 7.39 (d, J ¼ 8.4 Hz, 2H), 7.04e7.08 (m, 3H), 6.94 (dd, J ¼ 2.4,
8.7 Hz, 1H), 5.64 (s, 2H), 3.91 (s, 3H), 3.80 (s, 3H). MS (EI): m/z
7.19 (d, J ¼ 8.0 Hz, 2H), 7.12e7.15 (m, 3H), 6.86 (dd, J ¼ 2.0, 8.5 Hz,
1H), 6.68 (s, 1H), 5.83 (s, 2H), 5.29 (s, 1H), 3.93 (s, 3H), 3.89 (s, 6H),
3.87 (s, 3H), 3.81 (s, 3H).
(%):431.1602 (100); HRMS (ESI) for
C
25H22N2O5 (Mþ) calcd
430.1602, found 430.1529. HPLC purity of 97.11% (retention
time ¼ 30.45).
4.1.14. (1-(4-Bromobenzyl)-6-methoxy-1H-indol-3-yl)(3,4,5-
trimethoxyphenyl)methanone (28)
NaH (0.15 g, 3.8 mmol) was added to a solution of compound 9
(0.9 g, 2.6 mmol) in DMF (5 mL) and the mixture was stirred for
20 min. Methyl 4-bromobenzyl bromide (0.8 g, 3.2 mmol) was
added to the resulting mixture which was then stirred for 16 h. The
reaction was quenched with H2O (50 mL) and extracted with EtOAc
(50 mL ꢁ 3). The organic layers were collected and dried in vacuum
to afford compound 28 as an oily product. 1H NMR (300 MHz,
4.1.9. [1-(3-Bromo-benzenesulfonyl)-6-methoxy-1H-indol-3-yl]-
(3,4,5-trimethoxy-phenyl)- methanone (19)
3-Bromobenzenesulfonyl chloride (4.12 g, 16.11 mmol) was
added to a mixture of 9 (5.0 g, 10.65 mmol) and 60% of NaH (0.64 g,
16.11 mmol) in anhydrous DMF (50 mL) and the mixture was stirred
at room temperature for 3 h. The reaction was quenched with H2O,
and extracted with EtOAc (100 mL ꢁ 3). The combined organic layer
was dried over anhydrous MgSO4 and dried in vacuo to give a yel-
low residue which was purified by flash column chromatography
(n-hexane: EtOAc ¼ 4: 1) to afford compound 19 as a white powder.
CDCl3)
d
8.27 (d, J ¼ 6.0 Hz, 1H), 7.40e7.51 (m, 3H), 6.97e7.10 (m,
5H), 6.74 (d, J ¼ 3.0 Hz, 1H), 5.25 (s, 2H), 3.91 (s, 3H), 3.84 (s, 6H),
3.83 (s, 3H).
1H NMR (300 MHz, CDCl3)
(s, 1H), 7.84 (d, J ¼ 9.0 Hz, 1H), 7.73 (d, J ¼ 9.0 Hz, 1H), 7.50 (d,
J ¼ 0.9 Hz,1H), 7.39 (t, J ¼ 9.0 Hz,1H), 7.13 (s, 2H), 7.02e7.05 (m,1H),
3.92e3.97 (m, 12H).
d
8.13 (d, J ¼ 9.0 Hz, 1H), 8.06 (s, 1H), 7.90
4.2. Biology
4.2.1. HeLa nuclear HDAC enzyme inhibition
The HeLa nuclear extract HDAC activity was measured by using
the HDAC Fluorescent Activity Assay Kit (BioVision, CA) according
to manufacturer's instructions. Briefly, the HDAC fluorometric
substrate and assay buffer were added to HeLa nuclear extracts in a
96-well format and incubated at 37 ꢀC for 30 min. The reaction was
stopped by adding lysine developer, and the mixture was incubated
for another 30 min at 37 ꢀC. Additional negative controls included
incubation without the nuclear extract, without the substrate, or
4.1.10. [1-(4-Bromo-benzenesulfonyl)-6-methoxy-1H-indol-3-yl]-
(3,4,5-trimethoxy-phenyl)- methanone (20)
This compound was obtained yield from compound 9 in a
manner similar to that described for the preparation of 19: 1H NMR
(500 MHz, CDCl3)
d
8.11 (d, J ¼ 10.0 Hz, 1H), 7.89 (s, 1H), 7.75 (dd,
J ¼ 1.5, 7.0 Hz, 2H), 7.61 (dd, J ¼ 1.5, 7.0 Hz, 2H), 7.49 (d, J ¼ 2.5 Hz,
1H), 7.12 (s, 2H), 7.02 (dd, J ¼ 2.5, 8.5 Hz, 1H), 3.96 (s, 3H), 3.91 (s,
6H), 3. 93 (s, 3H).
without both. TSA at 1
mM was used as the positive control. A
fluorescence plate reader with excitation at 355 nm and emission at
460 nm was used to quantify HDAC activity.
4.1.11. (1-(3-Bromophenylsulfonyl)-1H-indol-3-yl)(3,4,5-
trimethoxyphenyl)methanone (21)
4.2.2. In vitro cell growth inhibitory activity
This compound was obtained from compound 18 in a manner
4.2.2.1. Cell culture. All human cancer cells were maintained in
RPMI 1640 medium containing 100 units/mL penicillin G sodium,
similar to that described for the preparation of 19 from 9: 1H NMR
(300 MHz, CDCl3)
7.80e8.02 (m, 2H), 7.85e7.89 (m, 1H), 7.70e7.74 (m, 1H), 7.33e7.47
d
8.23e8.28 (m, 1H), 8.05 (t, J ¼ 1.8 Hz, 1H),
100
25
m
g/mL streptomycin sulfate, 0.25
mg/mL amphotericin B, and
mg/mL gentamicin. The medium was supplemented with 10%
(m, 3H), 7.13 (s, 2H), 3.97 (s, 3H), 3.92 (s, 6H).
fetal bovine serum. The cells were cultured in a humidified incu-
bator at 37 ꢀC, in an atmosphere of 5% CO2 and 95% air.
4.1.12. (E)-tert-Butyl-3-(3-(6-methoxy-3-(3,4,5-
trimethoxybenzoyl)-1H-indol-1-ylsulfonyl)) phenyl acrylate (22)
A mixture of compound 19 (6.7 g, 11.95 mmol), Pd(OAc)2 (1.47 g,
6.58 mmol), PPh3 (1.57 g, 5.98 mmol), K2CO3 (1.65 g, 11.95 mmol),
triethylamine (1.7 mL, 11.95 mmol), tert-butyl acrylate (2.6 mL,
17.93 mmol), and anhydrous DMF (5 mL) was stirred at 100 ꢀC for
4.2.2.2. The sulforhodamine B (SRB) assay. Cell proliferation was
determined with the SRB assay. Human cancer A549 (non-small
cell lung cancer), HCT116 (human colon carcinoma), and PC-3
(prostate) cells were seeded in 96-well plates in medium with 5%
FBS. Cells were fixed with 10% trichloroacetic acid (TCA) to