S. Zhang et al. / Bioorg. Med. Chem. 18 (2010) 2394–2401
2399
(1H NMR and 13C NMR) were performed on a Bruker spectrometer
(400 M and 100 M), and chemical shifts (d values) were reported
as parts per million (ppm) downfield from tetramethylsilane
(TMS). Mass spectra were recorded using a Brucker Apex IV FTM
instrument at Mass Spectroscopy Center at Beijing Normal Univer-
sity using high-resolution electrospray ionization (ESI), or electron
impact ionization (EI).
29.88, 26.71, 22.61, 14.21 ppm. 19F NMR (400 MHz, CDCl3) d
À109.21 ppm. MS (ESI+) m/z: 429.1 (M+H+). IR (KBr pellet, cmÀ1):
3337, 1732, 1651, 1598, 1561, 1530, 1486, 1431, 1423, 1377,
1350, 1318, 1269, 1263, 1189, 813, 736. Anal. Calcd for
C21H21FN4O5: C, 58.87; H, 4.94; N, 13.08. Found: C, 58.51; H,
5.08; N, 13.22.
4.2.3. Preparation of 4-(5-(2-fluoro-4-nitrobenzamido)-1-meth
yl-1H-benzimidazol-2-yl)butanoic acid (a1)
4.2. Synthesis
Compound a4 (60 mg, 0.14 mmol) was added into CH3CH2OH
(6 mL) and cooled to 0 °C in an ice bath, the solution of LiOH
(30 mg, 0.7 mmol) in H2O (1 mL) was then added. The reaction
mixture was stirred overnight and the pH was adjusted to 2–3 with
35% HCl. The product was precipitated and filtered, the crude prod-
uct was crystallized to give a light yellow solid (48 mg, 85%) mp
207–209 °C. 1H NMR (400 MHz, DMSO) d 11.22 (s, 1H, –COOH),
8.38 (d, J = 1.2 Hz, 1H, Ar-H), 8.33 (dd, J = 9.6 Hz, 2.0 Hz, 1H, Ar-
H), 8.22 (dd, J = 8.4 Hz, 2.0 Hz, 1H, Ar-H), 8.02 (m, 1H, Ar-H), 7.93
(d, J = 8.9 Hz, 1H, Ar-H), 7.76 (d, J = 9.0 Hz, 1H, Ar-H), 3.96 (s, 3H,
N–CH3), 3.20 (t, J = 7.6 Hz, 2H, –CH2CH2CH2–), 2.45 (t, J = 7.1 Hz,
2H, –CH2CH2CH2–), 2.06 (m, 2H, –CH2CH2CH2–) ppm. 13C NMR
(100 MHz, DMSO) d 173.64, 161.41, 158.39 (d, JCF = 253.0 Hz, 1C),
153.92, 149.35 (d, JCF = 8.6 Hz, 1C), 136.27, 131.17 (d, JCF = 3.4 Hz,
1C), 130.56, 130.40, 129.30, 119.70 (d, JCF = 3.5 Hz, 1C), 117.99,
112.80, 112.10 (d, JCF = 27.3 Hz, 1C), 104.54, 32.53, 30.99, 24.42,
21.30 ppm. 19F NMR (400 MHz, CDCl3) d À111.08 ppm. MS (ESI+)
m/z: 401.5 (M+H+). IR (KBr pellet, cmÀ1): 3432, 3043, 1724, 1682,
1624, 1562, 1529, 1500, 1446, 1419, 1352, 1287, 1191, 816, 739.
Anal. Calcd for C19H17FN4O5: C, 57.00; H, 4.28; N, 13.99. found: C,
56.76; H, 4.53; N, 13.87.
The preparation of compound a2 was carried out by following
the same procedure in Ref. 32, and the preparation of compound
b2 was carried out by the same procedure in Ref. 33. The prepara-
tion and the analysis data of other compounds were shown below.
4.2.1. Preparation of ethyl 4-(5-(2,4-dinitrobenzamido)-1-meth
yl-1H-benzimidazol-2-yl)butanoate (a3)
Compound a2 (0.261 g, 1 mmol) and TEA (0.14 mL, 1 mmol)
was added into CH2Cl2 (10 mL) and cooled to 0 °C in an ice bath.
Then the solution of 2,4-dinitrobenzoyl chloride (0.23 g, 1.2 mmol)
in CH2Cl2 (5 mL) was added dropwise. The reaction mixture was
stirred in 0 °C for 0.5 h then at room temperature for 6 h. The reac-
tion mixture was washed by NaHCO3 aqueous (10 mL Â 2), water
(10 mL Â 2), the organic layer was collected and dried over Na2SO4.
The solvent was removed by rotary evaporation under vacuum.
The crude product was recrystallized in acetic ether to give the
product as yellow–green solid. (391 mg, 83% yield) mp 176–
178 °C. 1H NMR (400 MHz, CDCl3) d 8.73 (s, 1H, –NHCO–), 8.69
(d, J = 2.0, 1H, Ar-H), 8.35 (dd, J = 8.3, 2.1, 1H, Ar-H), 7.81 (d,
J = 8.3, 1H, Ar-H), 7.59 (s, 1H, Ar-H), 7.48 (d, J = 8.6, 1H, Ar-H),
7.16 (d, J = 8.6, 1H, Ar-H), 4.04 (q, J = 7.1, 2H, –CH2CH3), 3.67 (s,
3H, N–CH3), 2.82 (t, 2H, –CH2CH2CH2–), 2.38 (t, J = 7.0, 2H,
–CH2CH2CH2–), 2.05 (m, 2H, –CH2CH2CH2–), 1.18 (t, J = 7.1, 3H,
–CH2CH3) ppm. 13C NMR (100 MHz, CDCl3) d 173.06, 162.72,
155.69, 147.97, 146.19, 142.15, 137.93, 133.66, 131.59, 130.46,
128.23, 119.93, 116.72, 111.63, 109.23, 60.50, 33.22, 29.87, 26.59,
22.52, 14.20 ppm. MS (ESI+) m/z: 456.8 (M + H+). IR (KBr pellet,
cmÀ1): 3210, 1729, 1641, 1612, 1597, 1546, 1527, 1483, 1341,
1305, 1222, 1050, 1017, 906, 808, 736. Anal. Calcd for
C21H21N5O7: C, 55.38; H, 4.65; N, 15.38. Found: C, 55.27; H, 4.73;
N, 15.52.
4.2.4. Preparation of methyl 7-methyl-2-propyl-3-(2-(tosyloxy)
ethyl)-3H-benzimidazole-5-carboxylate (b3)
To a 20 mL dried THF, NaH (0.18 g, 7.5 mmol) was dissolved and
the solution was stirred in an ice bath. Then compound b2 (0.58 g,
2.5 mmol) was added portionwise. After stirred in room tempera-
ture for another 1 h, ethyleneglycol-1,2-ditosylate (5 mmol) was
added and the reaction mixture was stirred in 40–50 °C overnight.
The solvent was removed and the residue was chromatographed
over a column of silica gel (A:P = 3:1) to give a white solid.
(0.45 g, 42% yield) mp 167–168 °C. 1H NMR (400 MHz, CDCl3) d
7.65 (s, 1H, Ar-H), 7.54 (s, 1H, Ar-H), 7.34 (d, J = 8.3 Hz, 2H,
Ar-H), 6.94 (d, J = 8.1 Hz, 2H, Ar-H), 4.33 (t, J = 5.1 Hz, 2H,
–CH2CH2–OTs), 4.26 (t, J = 5.1, 2H, –CH2CH2–OTs), 3.86 (s, 3H,
–OCH3), 2.79 (t, J = 8.0 Hz, 2H, –CH2CH2CH3), 2.58 (s, 3H, Ar-CH3),
2.23 (s, 3H, Ar-CH3), 1.79 (m, 2H, –CH2CH2CH3), 0.99 (t, J = 7.3 Hz,
3H, –CH2CH2CH3) ppm. 13C NMR (100 MHz, CDCl3) d 167.5,
157.5, 145.6, 145.0, 133.4, 131.4, 129.6, 129.0, 127.4, 123.9,
123.8, 108.4, 66.4, 52.0, 42.6, 29.4, 21.7, 21.5, 16.7, 14.0 ppm. MS
(ESI+) m/z: 431.1 (M+H+). IR (KBr pellet, cmÀ1): 1702, 1436, 1359,
1340, 1279, 1249, 1205, 1193, 1180, 1009, 899, 769, 664, 554. Anal.
Calcd for C22H26N2O5S: C, 61.38; H, 6.09; N, 6.51. Found: C, 61.53;
H, 6.34; N, 6.73.
4.2.2. Preparation of ethyl 4-(5-(2-fluoro-4-nitrobenzamido)-1-
methyl-1H-benzimidazol-2-yl)butanoate (a4)
Bu4NFÁ3H2O (0.73 g, 2 mmol) was added into dry CH3CN (1 mL),
The solvent was evaporated under a stream of nitrogen at 78 °C in
a flask, and repeated at least twice. Then the solution of compound
a3 (0.455 g, 1 mmol) in the DMF (10 mL) was added to the flask
and quickly heated to 120 °C. After stirred in this temperature for
0.5 h, the reaction was cooled down and added 20 mL H2O. The
mixture was extracted with acetic ether (20 mL Â 3), the organic
layer was collected and evaporated by rotary evaporation under
vacuum. The residue was chromatographed over a column of silica
gel (A:P = 3:1) to give a yellow solid (52 yield) mp 176–178 °C. 1H
NMR (400 MHz, CDCl3) d 8.40 (d, J = 13.6 Hz, 1H, Ar-H), 8.34 (t,
J = 8.2 Hz, 1H, Ar-H), 8.11 (dd, J = 8.6, 2.0 Hz, 1H, Ar-H), 8.02 (dd,
J = 11.2, 2.0 Hz, 1H, Ar-H), 7.86 (d, J = 1.8 Hz, 1H, –NH–CO–), 7.53
(dd, J = 8.6, 1.9 Hz, 1H, Ar-H), 7.24 (d, J = 8.6 Hz, 1H, Ar-H), 4.06
(q, J = 7.1 Hz, 2H, –OCH2CH3), 3.71 (s, 3H, N–CH3), 2.90 (t,
J = 7.5 Hz, 2H, –CH2CH2CH2–), 2.44 (t, J = 7.0 Hz, 2H,
–CH2CH2CH2–), 2.13 (m, J = 7.1 Hz, 2H, –CH2CH2CH2–), 1.19 (t,
J = 7.1 Hz, 3H, –OCH2CH3) ppm. 13C NMR (100 MHz, CDCl3) d
173.12, 160.78, 158.74 (d, JCF = 91.4 Hz, 1C), 155.60, 150.26 (d,
JCF = 10.1 Hz, 1C), 142.75, 133.69, 133.68 (d, JCF = 2.5 Hz, 1C),
131.59, 127.42 (d, JCF = 12.6 Hz, 1C), 119.82 (d, JCF = 3.5 Hz, 1C),
116.62, 112.21 (d, JCF = 30.7 Hz, 1C), 112.00, 109.13, 60.46, 33.27,
4.2.5. Preparation of methyl 3-(2-fluoroethyl)-7-methyl-2-prop
yl-3H-benzimidazole-5-carboxylate (b4)
To a 20 mL dried THF, NaH (0.29 g, 12 mmol) was dissolved and
the solution was stirred in an ice bath. Then compound b3 (0.93 g,
4 mmol) was added portionwise. After being stirred in room
temperature for another 1 h, 1-bromo-2-fluoroethane (1.4 mL,
13 mmol) was added dropwise and the reaction mixture was stir-
red in 40–50 °C overnight. The solvent was removed and the resi-
due was chromatographed over a column of silica gel (A:P = 2:1) to
give a white solid. (0.48 g, 83% yield). mp 103–105 °C. 1H NMR
(400 MHz, CDCl3) d 7.78 (s, 1H, Ar-H), 7.72 (s, 1H, Ar-H), 4.68 (dt,
J = 46.8, 4.7 Hz, 2H, –CH2CH2F), 4.39 (dt, J = 25.6 Hz, 4.6 Hz, 2H,